def deserialize(self, text_string):
# fill self with json dictionary
try:
self.__dict__ = deserialize(text_string)
except:
tolog(
' received exception while converting json string to ArgoJob: '
+ str(sys.exc_info()[1]))
raise
# convert unicode strings to strings
self.preprocess = convert_unicode_string(self.preprocess)
self.preprocess_args = convert_unicode_string(self.preprocess_args)
self.postprocess = convert_unicode_string(self.postprocess)
self.postprocess_args = convert_unicode_string(self.postprocess_args)
self.input_url = convert_unicode_string(self.input_url)
self.output_url = convert_unicode_string(self.output_url)
self.username = convert_unicode_string(self.username)
self.group_identifier = convert_unicode_string(self.group_identifier)
self.job_status_routing_key = convert_unicode_string(
self.job_status_routing_key)
# need to convert vector of json job strings to objects
tmp_jobs = []
for job_dictionary in self.jobs:
tmp_job = BalsamJob()
tmp_job.__dict__ = job_dictionary
tmp_jobs.append(tmp_job)
# now copy into job list
self.jobs = tmp_jobs
def deserialize(self, text_string):
# fill self with json dictionary
try:
self.__dict__ = deserialize(text_string)
except:
tolog(" received exception while converting json string to ArgoJob: " + str(sys.exc_info()[1]))
raise
# convert unicode strings to strings
self.preprocess = convert_unicode_string(self.preprocess)
self.preprocess_args = convert_unicode_string(self.preprocess_args)
self.postprocess = convert_unicode_string(self.postprocess)
self.postprocess_args = convert_unicode_string(self.postprocess_args)
self.input_url = convert_unicode_string(self.input_url)
self.output_url = convert_unicode_string(self.output_url)
self.username = convert_unicode_string(self.username)
self.group_identifier = convert_unicode_string(self.group_identifier)
self.job_status_routing_key = convert_unicode_string(self.job_status_routing_key)
# need to convert vector of json job strings to objects
tmp_jobs = []
for job_dictionary in self.jobs:
tmp_job = BalsamJob()
tmp_job.__dict__ = job_dictionary
tmp_jobs.append(tmp_job)
# now copy into job list
self.jobs = tmp_jobs
def get_argo_job(self, job):
##-----------------------
# create argo job
##-----------------------
argo_job = ArgoJob()
argo_job.input_url = None #self.GRID_FTP_PROTOCOL + self.GRID_FTP_SERVER + self.job_path
if self.input_url is not None:
argo_job.input_url = self.input_url
argo_job.output_url = self.grid_ftp_protocol + self.grid_ftp_server + self.job_path
if self.output_url is not None:
argo_job.output_url = self.output_url
argo_job.username = self.username
argo_job.group_identifier = self.group_identifier
##-----------------------
# create get alpgen input cards balsam job
##-----------------------
input_file_imode0 = self.base_filename + '.input.0'
input_file_imode1 = self.base_filename + '.input.1'
input_file_imode2 = self.base_filename + '.input.2'
input_cards_job = BalsamJob()
input_cards_job.executable = self.athena_input_card_executable
input_cards_job.executable_args = ('-e ' + self.ecm
+ ' -r ' + self.run_number
+ ' -o ' + self.job_config
+ ' -j ' + self.evgen_job_opts)
input_cards_job.output_files = [input_file_imode0,
input_file_imode1,
input_file_imode2,
self.athena_postprocess_log]
input_cards_job.nodes = 1
input_cards_job.processes_per_node = 1
input_cards_job.wall_minutes = 0 # running on condor cluster so does not need time
input_cards_job.username = self.username
input_cards_job.target_site = self.serial_site
input_cards_job.postprocess = self.athena_postprocess
input_cards_job.postprocess_args = (' -i ' + self.athena_input_card_name + ' -p ' + self.process
+ ' -n ' + str(self.evtgen_phase1_number_events)
+ ' --log-filename=' + str(self.athena_postprocess_log))
if self.warmup_phase0_number_events is not None:
input_cards_job.postprocess_args += ' --wmp-evts-itr=' + str(self.warmup_phase0_number_events)
if self.warmup_phase0_number_iterations is not None:
input_cards_job.postprocess_args += ' --wmp-nitr=' + str(self.warmup_phase0_number_iterations)
if self.warmup_phase1_number_events is not None:
input_cards_job.postprocess_args += ' --wmp-evts=' + str(self.warmup_phase1_number_events)
argo_job.add_job(input_cards_job)
##-----------------------
# create warm-up job
##-----------------------
# create grid filenames
grid1 = self.base_filename + '.grid1'
grid2 = self.base_filename + '.grid2'
# create warmup balsam job
warmup = BalsamJob()
warmup.executable = self.process + 'gen90_mpi'
warmup.executable_args = input_file_imode0
warmup.input_files = [input_file_imode0]
warmup.output_files = [grid1,grid2]
warmup.nodes = 1
warmup.processes_per_node = 1
warmup.wall_minutes = 0 # running on condor cluster so does not need time
warmup.username = self.username
warmup.target_site = self.serial_site
warmup.preprocess = self.warmup_preprocess
argo_job.add_job(warmup)
##-----------------------
# create event generation job
##-----------------------
# create executable
alpgen_exe = self.process + 'gen90_mpi_ramdisk_nomrstpdfs'
if 'argo_cluster' in self.parallel_site: # no ramdisk needed on argo_cluster
alpgen_exe = self.process + 'gen90_mpi'
# create filenames
unw = self.base_filename + '.unw.gz'
unw_par = self.base_filename + '_unw.par'
wgt = self.base_filename + '.wgt'
wgt_par = self.base_filename + '.par'
directoryList_before = 'directoryList_before.txt'
directoryList_after = 'directoryList_after.txt'
# create event gen balsam job
evtgen = BalsamJob()
evtgen.executable = self.evtgen_executable
evtgen.executable_args = (alpgen_exe + ' ' + input_file_imode1 + ' '
+ input_file_imode2 + ' ' + str(self.evtgen_processes_per_node))
evtgen.input_files = [grid1,
grid2,
input_file_imode1,
input_file_imode2]
evtgen.output_files = [unw,
unw_par,
directoryList_before,
directoryList_after,
self.evtgen_postprocess + '.out',
self.evtgen_postprocess + '.err',
]
evtgen.preprocess = self.evtgen_preprocess
evtgen.postprocess = self.evtgen_postprocess
evtgen.postprocess_args = self.base_filename
evtgen.nodes = self.evtgen_nodes
evtgen.processes_per_node = self.evtgen_processes_per_node
evtgen.wall_minutes = self.evtgen_wall_minutes
evtgen.username = self.username
evtgen.scheduler_args = self.evtgen_scheduler_args
evtgen.target_site = self.parallel_site
argo_job.add_job(evtgen)
return argo_job
def get_argo_job(self, job):
##-----------------------
# create argo job
##-----------------------
argo_job = ArgoJob()
argo_job.input_url = None #self.GRID_FTP_PROTOCOL + self.GRID_FTP_SERVER + self.job_path
if self.input_url is not None:
argo_job.input_url = self.input_url
argo_job.output_url = self.grid_ftp_protocol + self.grid_ftp_server + self.job_path
if self.output_url is not None:
argo_job.output_url = self.output_url
argo_job.username = self.username
argo_job.group_identifier = self.group_identifier
##-----------------------
# create get alpgen input cards balsam job
##-----------------------
input_file_imode0 = self.base_filename + '.input.0'
input_file_imode1 = self.base_filename + '.input.1'
input_file_imode2 = self.base_filename + '.input.2'
input_cards_job = BalsamJob()
input_cards_job.executable = self.athena_input_card_executable
input_cards_job.executable_args = ('-e ' + self.ecm + ' -r ' +
self.run_number + ' -o ' +
self.job_config + ' -j ' +
self.evgen_job_opts)
input_cards_job.output_files = [
input_file_imode0, input_file_imode1, input_file_imode2,
self.athena_postprocess_log
]
input_cards_job.nodes = 1
input_cards_job.processes_per_node = 1
input_cards_job.wall_minutes = 0 # running on condor cluster so does not need time
input_cards_job.username = self.username
input_cards_job.target_site = self.serial_site
input_cards_job.postprocess = self.athena_postprocess
input_cards_job.postprocess_args = (
' -i ' + self.athena_input_card_name + ' -p ' + self.process +
' -n ' + str(self.evtgen_phase1_number_events) +
' --log-filename=' + str(self.athena_postprocess_log))
if self.warmup_phase0_number_events is not None:
input_cards_job.postprocess_args += ' --wmp-evts-itr=' + str(
self.warmup_phase0_number_events)
if self.warmup_phase0_number_iterations is not None:
input_cards_job.postprocess_args += ' --wmp-nitr=' + str(
self.warmup_phase0_number_iterations)
if self.warmup_phase1_number_events is not None:
input_cards_job.postprocess_args += ' --wmp-evts=' + str(
self.warmup_phase1_number_events)
argo_job.add_job(input_cards_job)
##-----------------------
# create warm-up job
##-----------------------
# create grid filenames
grid1 = self.base_filename + '.grid1'
grid2 = self.base_filename + '.grid2'
# create warmup balsam job
warmup = BalsamJob()
warmup.executable = self.process + 'gen90_mpi'
warmup.executable_args = input_file_imode0
warmup.input_files = [input_file_imode0]
warmup.output_files = [grid1, grid2]
warmup.nodes = 1
warmup.processes_per_node = 1
warmup.wall_minutes = 0 # running on condor cluster so does not need time
warmup.username = self.username
warmup.target_site = self.serial_site
warmup.preprocess = self.warmup_preprocess
argo_job.add_job(warmup)
##-----------------------
# create event generation job
##-----------------------
# create executable
alpgen_exe = self.process + 'gen90_mpi_ramdisk_nomrstpdfs'
if 'argo_cluster' in self.parallel_site: # no ramdisk needed on argo_cluster
alpgen_exe = self.process + 'gen90_mpi'
# create filenames
unw = self.base_filename + '.unw.gz'
unw_par = self.base_filename + '_unw.par'
wgt = self.base_filename + '.wgt'
wgt_par = self.base_filename + '.par'
directoryList_before = 'directoryList_before.txt'
directoryList_after = 'directoryList_after.txt'
# create event gen balsam job
evtgen = BalsamJob()
evtgen.executable = self.evtgen_executable
evtgen.executable_args = (alpgen_exe + ' ' + input_file_imode1 + ' ' +
input_file_imode2 + ' ' +
str(self.evtgen_processes_per_node))
evtgen.input_files = [
grid1, grid2, input_file_imode1, input_file_imode2
]
evtgen.output_files = [
unw,
unw_par,
directoryList_before,
directoryList_after,
self.evtgen_postprocess + '.out',
self.evtgen_postprocess + '.err',
]
evtgen.preprocess = self.evtgen_preprocess
evtgen.postprocess = self.evtgen_postprocess
evtgen.postprocess_args = self.base_filename
evtgen.nodes = self.evtgen_nodes
evtgen.processes_per_node = self.evtgen_processes_per_node
evtgen.wall_minutes = self.evtgen_wall_minutes
evtgen.username = self.username
evtgen.scheduler_args = self.evtgen_scheduler_args
evtgen.target_site = self.parallel_site
argo_job.add_job(evtgen)
return argo_job