webbrowser.open_new(deviceInfo['verification_with_code_uri'])
time.sleep(15)
## PAUSE HERE
# Once the user has granted us access to objects we requested, we can
# get the basespace access token and start browsing simply by calling updatePriviliges
# on the baseSpaceApi instance.
code = deviceInfo['device_code']
myAPI.updatePrivileges(code)
# As a reference the provided access-token can be obtained from the BaseSpaceApi object
print "\nMy Access-token:"
print myAPI.getAccessToken()
# Let's try and grab all available genomes with our new api!
allGenomes = myAPI.getAvailableGenomes()
print "\nGenomes \n" + str(allGenomes)
# If at a later stage we wish to initialize a BaseSpaceAPI object when we already have
# an access-token from a previous sessions, this may simply be done by initializing the BaseSpaceAPI
# object using the key-word AccessToken.
myToken = myAPI.getAccessToken()
myAPI.setAccessToken(myToken)
print "\nA BaseSpaceAPI instance was updated with an access-token: "
print myAPI
#################### Web-based verification #################################
# The scenario where the authentication is done through a web-browser
if clientKey:
BSapiWeb = BaseSpaceAPI(clientKey, clientSecret, apiServer, apiVersion,
BaseSpaceUrl = 'https://api.cloud-endor.illumina.com/'
version = 'v1pre3'
# First, create a client for making calls for this user session
myAPI = BaseSpaceAPI(client_key, client_secret, BaseSpaceUrl, version, AppSessionId,AccessToken=accessToken)
# First, let's grab the genome with id=4
myGenome = myAPI.getGenomeById('4')
print "\nThe Genome is " + str(myGenome)
print "We can get more information from the genome object"
print 'Id: ' + myGenome.Id
print 'Href: ' + myGenome.Href
print 'DisplayName: ' + myGenome.DisplayName
# Get a list of all genomes
allGenomes = myAPI.getAvailableGenomes()
print "\nGenomes \n" + str(allGenomes)
# Let's have a look at the current user
user = myAPI.getUserById('current')
print "\nThe current user is \n" + str(user)
# Now list the projects for this user
myProjects = myAPI.getProjectByUser('current')
print "\nThe projects for this user are \n" + str(myProjects)
# We can also achieve this by making a call using the 'user instance'
myProjects2 = user.getProjects(myAPI)
print "\nProjects retrieved from the user instance \n" + str(myProjects2)
# List the runs available for the current user
time.sleep(15) ## PAUSE HERE # Once the user has granted us access to objects we requested, we can # get the basespace access token and start browsing simply by calling updatePriviliges # on the baseSpaceApi instance. code = deviceInfo['device_code'] BSapi.updatePrivileges(code) # As a reference the provided access-token can be obtained from the BaseSpaceApi object print "\nMy Access-token:" print BSapi.getAccessToken() # Let's try and grab all available genomes with our new api! allGenomes = BSapi.getAvailableGenomes() print "\nGenomes \n" + str(allGenomes) # If at a later stage we wish to initialize a BaseSpaceAPI object when we already have # an access-token from a previous sessions, this may simply be done by initializing the BaseSpaceAPI # object using the key-word AccessToken. myToken = BSapi.getAccessToken() BSapi = BaseSpaceAPI(client_key, client_secret, BaseSpaceUrl, version, AppSessionId, AccessToken=myToken) print "\nA BaseSpaceAPI instance initialized with an access-token: " print BSapi #################### Web-based verification ################################# # The scenario where the authentication is done through a web-browser BSapiWeb = BaseSpaceAPI(client_key, client_secret, BaseSpaceUrl, version, AppSessionId)
