class CrystalTestCase(unittest.TestCase):
def setUp(self):
self.crystal = Crystal({ 'a' : 'T T G A C T C T C T T A A', \
'b' : Chain('G A G A G T C A'), \
'c' : 'T T G A C T C T C T T A A', \
'd' : Chain('G A G A G T C A')
})
def testLen(self):
self.assertEquals(len(self.crystal), len(self.crystal.data))
def testGetItem(self):
self.assertEquals(self.crystal[ 'a' ], self.crystal.data[ 'a' ])
def testSetItem(self):
target = copy.deepcopy(self.crystal)
e = 'MET ALA LEU THR ASN ALA GLN ILE LEU ALA VAL ILE ASP SER'
f = 'LEU GLY GLY GLY LEU GLN GLY THR LEU HIS CYS TYR GLU ILE PRO LEU'
target[ 'e' ] = e
target[ 'f' ] = Chain(f)
self.assertEquals(Chain(e), target[ 'e' ])
self.assertEquals(Chain(f), target[ 'f' ])
def testDelItem(self):
target = copy.deepcopy(self.crystal)
del target[ 'b' ]
self.failIf(target.data.has_key('b'))
self.failUnless(target.data.has_key('a'))
self.failUnless(target.data.has_key('c'))
def testClear(self):
target = copy.deepcopy(self.crystal)
target.clear()
self.assertEquals(len(target.data), 0)
def testKeys(self):
self.assertEquals(self.crystal.keys(), self.crystal.data.keys())
def testValues(self):
self.assertEquals(self.crystal.values(), self.crystal.data.values())
def testItems(self):
self.assertEquals(self.crystal.items(), self.crystal.data.items())
def testKeys(self):
self.assertEquals(self.crystal.keys(), self.crystal.data.keys())
def testHasKey(self):
self.failUnless(self.crystal.has_key('b'))
self.failUnless(self.crystal.has_key('c'))
self.failIf(self.crystal.has_key('z'))
class CrystalTestCase(unittest.TestCase):
def setUp(self):
self.crystal = Crystal({ 'a' : 'T T G A C T C T C T T A A', \
'b' : Chain('G A G A G T C A'), \
'c' : 'T T G A C T C T C T T A A', \
'd' : Chain('G A G A G T C A')
})
def testLen(self):
self.assertEquals(len(self.crystal), len(self.crystal.data))
def testGetItem(self):
self.assertEquals(self.crystal['a'], self.crystal.data['a'])
def testSetItem(self):
target = copy.deepcopy(self.crystal)
e = 'MET ALA LEU THR ASN ALA GLN ILE LEU ALA VAL ILE ASP SER'
f = 'LEU GLY GLY GLY LEU GLN GLY THR LEU HIS CYS TYR GLU ILE PRO LEU'
target['e'] = e
target['f'] = Chain(f)
self.assertEquals(Chain(e), target['e'])
self.assertEquals(Chain(f), target['f'])
def testDelItem(self):
target = copy.deepcopy(self.crystal)
del target['b']
self.failIf(target.data.has_key('b'))
self.failUnless(target.data.has_key('a'))
self.failUnless(target.data.has_key('c'))
def testClear(self):
target = copy.deepcopy(self.crystal)
target.clear()
self.assertEquals(len(target.data), 0)
def testKeys(self):
self.assertEquals(self.crystal.keys(), self.crystal.data.keys())
def testValues(self):
self.assertEquals(self.crystal.values(), self.crystal.data.values())
def testItems(self):
self.assertEquals(self.crystal.items(), self.crystal.data.items())
def testKeys(self):
self.assertEquals(self.crystal.keys(), self.crystal.data.keys())
def testHasKey(self):
self.failUnless(self.crystal.has_key('b'))
self.failUnless(self.crystal.has_key('c'))
self.failIf(self.crystal.has_key('z'))
