def test_lipoprotein(self): """Parsing ENZYME record for lipoprotein lipase (3.1.1.34).""" filename = os.path.join("Enzymes", "lipoprotein.txt") with open(filename) as handle: record = Enzyme.read(handle) self.assertEqual(record["ID"], "3.1.1.34") self.assertEqual(record["DE"], "Lipoprotein lipase.") self.assertEqual(len(record["AN"]), 3) self.assertEqual(record["AN"][0], "Clearing factor lipase.") self.assertEqual(record["AN"][1], "Diacylglycerol lipase.") self.assertEqual(record["AN"][2], "Diglyceride lipase.") self.assertEqual( record["CA"], "Triacylglycerol + H(2)O = diacylglycerol + a carboxylate.") self.assertEqual( record["CC"][0], "Hydrolyzes triacylglycerols in chylomicrons and very low-density lipoproteins (VLDL).", ) self.assertEqual(record["CC"][1], "Also hydrolyzes diacylglycerol.") self.assertEqual(record["PR"], ["PDOC00110"]) self.assertEqual(record["DR"][0], ["P11151", "LIPL_BOVIN"]) self.assertEqual(record["DR"][1], ["P11153", "LIPL_CAVPO"]) self.assertEqual(record["DR"][2], ["P11602", "LIPL_CHICK"]) self.assertEqual(record["DR"][3], ["P55031", "LIPL_FELCA"]) self.assertEqual(record["DR"][4], ["P06858", "LIPL_HUMAN"]) self.assertEqual(record["DR"][5], ["P11152", "LIPL_MOUSE"]) self.assertEqual(record["DR"][6], ["O46647", "LIPL_MUSVI"]) self.assertEqual(record["DR"][7], ["P49060", "LIPL_PAPAN"]) self.assertEqual(record["DR"][8], ["P49923", "LIPL_PIG"]) self.assertEqual(record["DR"][9], ["Q06000", "LIPL_RAT"]) self.assertEqual(record["DR"][10], ["Q29524", "LIPL_SHEEP"]) self.assertTrue( str(record).startswith("ID: 3.1.1.34\nDE: Lipoprotein lipase.\n"), "Did not expect:\n%s" % record, )
def test_lipoprotein(self): "Parsing ENZYME record for lipoprotein lipase (3.1.1.34)" filename = os.path.join( 'Enzymes', 'lipoprotein.txt') handle = open(filename) record = Enzyme.read(handle) handle.close() self.assertEqual(record["ID"], "3.1.1.34") self.assertEqual(record["DE"], "Lipoprotein lipase.") self.assertEqual(len(record["AN"]), 3) self.assertEqual(record["AN"][0], "Clearing factor lipase.") self.assertEqual(record["AN"][1], "Diacylglycerol lipase.") self.assertEqual(record["AN"][2], "Diglyceride lipase.") self.assertEqual(record["CA"], "Triacylglycerol + H(2)O = diacylglycerol + a carboxylate.") self.assertEqual(record["CC"][0], 'Hydrolyzes triacylglycerols in chylomicrons and very low-density lipoproteins (VLDL).') self.assertEqual(record["CC"][1], "Also hydrolyzes diacylglycerol.") self.assertEqual(record['PR'], ["PDOC00110"]) self.assertEqual(record["DR"][0], ["P11151", "LIPL_BOVIN"]) self.assertEqual(record["DR"][1], ["P11153", "LIPL_CAVPO"]) self.assertEqual(record["DR"][2], ["P11602", "LIPL_CHICK"]) self.assertEqual(record["DR"][3], ["P55031", "LIPL_FELCA"]) self.assertEqual(record["DR"][4], ["P06858", "LIPL_HUMAN"]) self.assertEqual(record["DR"][5], ["P11152", "LIPL_MOUSE"]) self.assertEqual(record["DR"][6], ["O46647", "LIPL_MUSVI"]) self.assertEqual(record["DR"][7], ["P49060", "LIPL_PAPAN"]) self.assertEqual(record["DR"][8], ["P49923", "LIPL_PIG"]) self.assertEqual(record["DR"][9], ["Q06000", "LIPL_RAT"]) self.assertEqual(record["DR"][10], ["Q29524", "LIPL_SHEEP"])
def test_lipoprotein(self): """Parsing ENZYME record for lipoprotein lipase (3.1.1.34)""" filename = os.path.join('Enzymes', 'lipoprotein.txt') handle = open(filename) record = Enzyme.read(handle) handle.close() self.assertEqual(record["ID"], "3.1.1.34") self.assertEqual(record["DE"], "Lipoprotein lipase.") self.assertEqual(len(record["AN"]), 3) self.assertEqual(record["AN"][0], "Clearing factor lipase.") self.assertEqual(record["AN"][1], "Diacylglycerol lipase.") self.assertEqual(record["AN"][2], "Diglyceride lipase.") self.assertEqual(record["CA"], "Triacylglycerol + H(2)O = diacylglycerol + a carboxylate.") self.assertEqual(record["CC"][0], 'Hydrolyzes triacylglycerols in chylomicrons and very low-density lipoproteins (VLDL).') self.assertEqual(record["CC"][1], "Also hydrolyzes diacylglycerol.") self.assertEqual(record['PR'], ["PDOC00110"]) self.assertEqual(record["DR"][0], ["P11151", "LIPL_BOVIN"]) self.assertEqual(record["DR"][1], ["P11153", "LIPL_CAVPO"]) self.assertEqual(record["DR"][2], ["P11602", "LIPL_CHICK"]) self.assertEqual(record["DR"][3], ["P55031", "LIPL_FELCA"]) self.assertEqual(record["DR"][4], ["P06858", "LIPL_HUMAN"]) self.assertEqual(record["DR"][5], ["P11152", "LIPL_MOUSE"]) self.assertEqual(record["DR"][6], ["O46647", "LIPL_MUSVI"]) self.assertEqual(record["DR"][7], ["P49060", "LIPL_PAPAN"]) self.assertEqual(record["DR"][8], ["P49923", "LIPL_PIG"]) self.assertEqual(record["DR"][9], ["Q06000", "LIPL_RAT"]) self.assertEqual(record["DR"][10], ["Q29524", "LIPL_SHEEP"])
def test_valine(self): "Parsing ENZYME record for valine decarboxylase (4.1.1.14)" filename = os.path.join( 'Enzymes', 'valine.txt') handle = open(filename) record = Enzyme.read(handle) self.assertEqual(record["ID"], "4.1.1.14") self.assertEqual(record["DE"], "Valine decarboxylase.") self.assertEqual(record["CA"], "L-valine = 2-methylpropanamine + CO(2).") self.assertEqual(record["CF"], "Pyridoxal 5'-phosphate.") self.assertEqual(record["CC"], ["Also acts on L-leucine."]) self.assertEqual(len(record["DR"]), 0)
def test_valine(self): """Parsing ENZYME record for valine decarboxylase (4.1.1.14)""" filename = os.path.join('Enzymes', 'valine.txt') handle = open(filename) record = Enzyme.read(handle) handle.close() self.assertEqual(record["ID"], "4.1.1.14") self.assertEqual(record["DE"], "Valine decarboxylase.") self.assertEqual(record["CA"], "L-valine = 2-methylpropanamine + CO(2).") self.assertEqual(record["CF"], "Pyridoxal 5'-phosphate.") self.assertEqual(record["CC"], ["Also acts on L-leucine."]) self.assertEqual(len(record["DR"]), 0)
def test_lactate(self): "Parsing ENZYME record for lactate racemase (5.1.2.1)" filename = os.path.join('Enzymes', 'lactate.txt') handle = open(filename) record = Enzyme.read(handle) self.assertEqual(record["ID"], "5.1.2.1") self.assertEqual(record["DE"], "Lactate racemase.") self.assertEqual(len(record["AN"]), 3) self.assertEqual(record["AN"][0], "Hydroxyacid racemase.") self.assertEqual(record["AN"][1], "Lactic acid racemase.") self.assertEqual(record["AN"][2], "Lacticoracemase.") self.assertEqual(record["CA"], "(S)-lactate = (R)-lactate.") self.assertEqual(len(record["DR"]), 0)
def test_lactate(self): "Parsing ENZYME record for lactate racemase (5.1.2.1)" filename = os.path.join( 'Enzymes', 'lactate.txt') handle = open(filename) record = Enzyme.read(handle) self.assertEqual(record["ID"], "5.1.2.1") self.assertEqual(record["DE"], "Lactate racemase.") self.assertEqual(len(record["AN"]), 3) self.assertEqual(record["AN"][0], "Hydroxyacid racemase.") self.assertEqual(record["AN"][1], "Lactic acid racemase.") self.assertEqual(record["AN"][2], "Lacticoracemase.") self.assertEqual(record["CA"], "(S)-lactate = (R)-lactate.") self.assertEqual(len(record["DR"]), 0)
def test_valine(self): """Parsing ENZYME record for valine decarboxylase (4.1.1.14)""" filename = os.path.join('Enzymes', 'valine.txt') handle = open(filename) record = Enzyme.read(handle) handle.close() self.assertEqual(record["ID"], "4.1.1.14") self.assertEqual(record["DE"], "Valine decarboxylase.") self.assertEqual(record["CA"], "L-valine = 2-methylpropanamine + CO(2).") self.assertEqual(record["CF"], "Pyridoxal 5'-phosphate.") self.assertEqual(record["CC"], ["Also acts on L-leucine."]) self.assertEqual(len(record["DR"]), 0) self.assertTrue(str(record).startswith("ID: 4.1.1.14\nDE: Valine decarboxylase.\n"), "Did not expect:\n%s" % record)
def test_valine(self): """Parsing ENZYME record for valine decarboxylase (4.1.1.14).""" filename = os.path.join("Enzymes", "valine.txt") handle = open(filename) record = Enzyme.read(handle) handle.close() self.assertEqual(record["ID"], "4.1.1.14") self.assertEqual(record["DE"], "Valine decarboxylase.") self.assertEqual(record["CA"], "L-valine = 2-methylpropanamine + CO(2).") self.assertEqual(record["CF"], "Pyridoxal 5'-phosphate.") self.assertEqual(record["CC"], ["Also acts on L-leucine."]) self.assertEqual(len(record["DR"]), 0) self.assertTrue(str(record).startswith("ID: 4.1.1.14\nDE: Valine decarboxylase.\n"), "Did not expect:\n%s" % record)
def test_lactate(self): """Parsing ENZYME record for lactate racemase (5.1.2.1)""" filename = os.path.join('Enzymes', 'lactate.txt') handle = open(filename) record = Enzyme.read(handle) handle.close() self.assertEqual(record["ID"], "5.1.2.1") self.assertEqual(record["DE"], "Lactate racemase.") self.assertEqual(len(record["AN"]), 3) self.assertEqual(record["AN"][0], "Hydroxyacid racemase.") self.assertEqual(record["AN"][1], "Lactic acid racemase.") self.assertEqual(record["AN"][2], "Lacticoracemase.") self.assertEqual(record["CA"], "(S)-lactate = (R)-lactate.") self.assertEqual(len(record["DR"]), 0) self.assertTrue(str(record).startswith("ID: 5.1.2.1\nDE: Lactate racemase.\n"), "Did not expect:\n%s" % record)
def test_lactate(self): """Parsing ENZYME record for lactate racemase (5.1.2.1).""" filename = os.path.join("Enzymes", "lactate.txt") with open(filename) as handle: record = Enzyme.read(handle) self.assertEqual(record["ID"], "5.1.2.1") self.assertEqual(record["DE"], "Lactate racemase.") self.assertEqual(len(record["AN"]), 3) self.assertEqual(record["AN"][0], "Hydroxyacid racemase.") self.assertEqual(record["AN"][1], "Lactic acid racemase.") self.assertEqual(record["AN"][2], "Lacticoracemase.") self.assertEqual(record["CA"], "(S)-lactate = (R)-lactate.") self.assertEqual(len(record["DR"]), 0) self.assertTrue( str(record).startswith("ID: 5.1.2.1\nDE: Lactate racemase.\n"), "Did not expect:\n%s" % record)
def test_proline(self): "Parsing ENZYME record for proline racemase (5.1.1.4)" filename = os.path.join('Enzymes', 'proline.txt') handle = open(filename) record = Enzyme.read(handle) self.assertEqual(record["ID"], "5.1.1.4") self.assertEqual(record["DE"], "Proline racemase.") self.assertEqual(record["CA"], "L-proline = D-proline.") self.assertEqual(len(record["DR"]), 9) self.assertEqual(record["DR"][0], ["Q17ZY4", "PRAC_CLOD6"]) self.assertEqual(record["DR"][1], ["A8DEZ8", "PRAC_CLODI"]) self.assertEqual(record["DR"][2], ["Q4DA80", "PRCMA_TRYCR"]) self.assertEqual(record["DR"][3], ["Q868H8", "PRCMB_TRYCR"]) self.assertEqual(record["DR"][4], ["Q3SX04", "PRCM_BOVIN"]) self.assertEqual(record["DR"][5], ["Q96EM0", "PRCM_HUMAN"]) self.assertEqual(record["DR"][6], ["Q9CXA2", "PRCM_MOUSE"]) self.assertEqual(record["DR"][7], ["Q5RC28", "PRCM_PONAB"]) self.assertEqual(record["DR"][8], ["Q66II5", "PRCM_XENTR"])
def test_proline(self): "Parsing ENZYME record for proline racemase (5.1.1.4)" filename = os.path.join( 'Enzymes', 'proline.txt') handle = open(filename) record = Enzyme.read(handle) self.assertEqual(record["ID"], "5.1.1.4") self.assertEqual(record["DE"], "Proline racemase.") self.assertEqual(record["CA"], "L-proline = D-proline.") self.assertEqual(len(record["DR"]), 9) self.assertEqual(record["DR"][0], ["Q17ZY4", "PRAC_CLOD6"]) self.assertEqual(record["DR"][1], ["A8DEZ8", "PRAC_CLODI"]) self.assertEqual(record["DR"][2], ["Q4DA80", "PRCMA_TRYCR"]) self.assertEqual(record["DR"][3], ["Q868H8", "PRCMB_TRYCR"]) self.assertEqual(record["DR"][4], ["Q3SX04", "PRCM_BOVIN"]) self.assertEqual(record["DR"][5], ["Q96EM0", "PRCM_HUMAN"]) self.assertEqual(record["DR"][6], ["Q9CXA2", "PRCM_MOUSE"]) self.assertEqual(record["DR"][7], ["Q5RC28", "PRCM_PONAB"]) self.assertEqual(record["DR"][8], ["Q66II5", "PRCM_XENTR"])
def test_proline(self): """Parsing ENZYME record for proline racemase (5.1.1.4).""" filename = os.path.join("Enzymes", "proline.txt") with open(filename) as handle: record = Enzyme.read(handle) self.assertEqual(record["ID"], "5.1.1.4") self.assertEqual(record["DE"], "Proline racemase.") self.assertEqual(record["CA"], "L-proline = D-proline.") self.assertEqual(len(record["DR"]), 9) self.assertEqual(record["DR"][0], ["Q17ZY4", "PRAC_CLOD6"]) self.assertEqual(record["DR"][1], ["A8DEZ8", "PRAC_CLODI"]) self.assertEqual(record["DR"][2], ["Q4DA80", "PRCMA_TRYCR"]) self.assertEqual(record["DR"][3], ["Q868H8", "PRCMB_TRYCR"]) self.assertEqual(record["DR"][4], ["Q3SX04", "PRCM_BOVIN"]) self.assertEqual(record["DR"][5], ["Q96EM0", "PRCM_HUMAN"]) self.assertEqual(record["DR"][6], ["Q9CXA2", "PRCM_MOUSE"]) self.assertEqual(record["DR"][7], ["Q5RC28", "PRCM_PONAB"]) self.assertEqual(record["DR"][8], ["Q66II5", "PRCM_XENTR"]) self.assertTrue( str(record).startswith("ID: 5.1.1.4\nDE: Proline racemase.\n"), "Did not expect:\n%s" % record)
from Bio.ExPASy import Enzyme with open("/home/koreanraichu/RuBisCO.txt") as handle: record = Enzyme.read(handle) print(record['ID']) # EC no. print(record['DE']) # description print(record['AN']) # 대충 synonyms같은건가? 뭐 얘 이렇게도 불러요 이런거 print(record["CA"]) # 촉매하는 반응(오 이거 식으로 나온다) print(record["PR"]) # 이건 모르겠다... 데이터베이스 번호인가... print(record["CC"]) # 아마도 뭐 하는 효소인가에 대한 설명인 듯 print(record['DR']) # 뭔진 모르겠지만 일단 잘못했어요... 뭐가 되게 많이떴는데 넘파이 마려웠음