def setUp(self):
self.names = ["Bob", "Dylan", "Doesn't", "Like", "Spam"]
self.count_display = ChromosomeCounts(self.names)
class ChromosomeCountTest(unittest.TestCase):
"""Test the display representation for simple counts on a chromosome.
"""
def setUp(self):
self.names = ["Bob", "Dylan", "Doesn't", "Like", "Spam"]
self.count_display = ChromosomeCounts(self.names)
def test_add_count(self):
"""Add counts to specific chromosome segments.
"""
self.count_display.add_count(self.names[1])
self.count_display.add_count(self.names[2], 5)
try:
self.count_display.add_count("Non-existent")
raise AssertionError("Didn't raise a KeyError on a fake key")
except KeyError:
pass
def test_add_label(self):
"""Add labels to chromosome segments.
"""
self.count_display.add_label(self.names[1], "Rules")
try:
self.count_display.add_label("Non-existent", "Elephant")
raise AssertionError("Didn't raise a KeyError on a fake key")
except KeyError:
pass
def test_set_scale(self):
"""Set the scale for a chromosome segment.
"""
self.count_display.set_scale(self.names[1], 1.5)
try:
self.count_display.set_scale("Non-existant", 5)
raise AssertionError("Didn't raise a KeyError on a fake key.")
except KeyError:
pass
def test_color_from_count(self):
"""Retrieve a color from a count number with the default color scheme.
"""
test_color = self.count_display._color_from_count(3)
assert test_color == colors.blue, "Unexpected color %s" % test_color
test_color = self.count_display._color_from_count(9)
assert test_color == colors.red, "Unexpected color %s" % test_color
try:
self.count_display._color_from_count(200)
raise AssertionError("Didn't raise an error for bad count.")
except ValueError:
pass
def test_fill_chromosome(self):
"""Test filling out the information on a chromosome.
"""
test_chr = BasicChromosome.Chromosome("1")
self.count_display.add_count(self.names[2], 5)
self.count_display.add_count(self.names[1], 2)
self.count_display.add_label(self.names[3], "Test-Label")
new_chr = self.count_display.fill_chromosome(test_chr)
def test_get_segment_info(self):
"""Test retrieval of segment information.
"""
test_count_num = 1
test_count_value = 5
test_label_num = 3
test_label_value = "BigBird"
self.count_display.add_count(self.names[test_count_num],
test_count_value)
self.count_display.add_label(self.names[test_label_num],
test_label_value)
seg_info = self.count_display.get_segment_info()
assert seg_info[test_count_num][0] == test_count_value, \
"Did not set and retrieve counts correctly."
assert seg_info[test_label_num][1] == test_label_value, \
"Did not set and retrieve label correctly."
class ChromosomeCountTest(unittest.TestCase):
"""Test the display representation for simple counts on a chromosome.
"""
def setUp(self):
self.names = ["Bob", "Dylan", "Doesn't", "Like", "Spam"]
self.count_display = ChromosomeCounts(self.names)
def test_add_count(self):
"""Add counts to specific chromosome segments.
"""
self.count_display.add_count(self.names[1])
self.count_display.add_count(self.names[2], 5)
try:
self.count_display.add_count("Non-existent")
raise AssertionError("Didn't raise a KeyError on a fake key")
except KeyError:
pass
def test_add_label(self):
"""Add labels to chromosome segments.
"""
self.count_display.add_label(self.names[1], "Rules")
try:
self.count_display.add_label("Non-existent", "Elephant")
raise AssertionError("Didn't raise a KeyError on a fake key")
except KeyError:
pass
def test_set_scale(self):
"""Set the scale for a chromosome segment.
"""
self.count_display.set_scale(self.names[1], 1.5)
try:
self.count_display.set_scale("Non-existant", 5)
raise AssertionError("Didn't raise a KeyError on a fake key.")
except KeyError:
pass
def test_color_from_count(self):
"""Retrieve a color from a count number with the default color scheme.
"""
test_color = self.count_display._color_from_count(3)
assert test_color == colors.blue, "Unexpected color %s" % test_color
test_color = self.count_display._color_from_count(9)
assert test_color == colors.red, "Unexpected color %s" % test_color
try:
self.count_display._color_from_count(200)
raise AssertionError("Didn't raise an error for bad count.")
except ValueError:
pass
def test_fill_chromosome(self):
"""Test filling out the information on a chromosome.
"""
test_chr = BasicChromosome.Chromosome("1")
self.count_display.add_count(self.names[2], 5)
self.count_display.add_count(self.names[1], 2)
self.count_display.add_label(self.names[3], "Test-Label")
new_chr = self.count_display.fill_chromosome(test_chr)
def test_get_segment_info(self):
"""Test retrieval of segment information.
"""
test_count_num = 1
test_count_value = 5
test_label_num = 3
test_label_value = "BigBird"
self.count_display.add_count(self.names[test_count_num],
test_count_value)
self.count_display.add_label(self.names[test_label_num],
test_label_value)
seg_info = self.count_display.get_segment_info()
assert seg_info[test_count_num][0] == test_count_value, \
"Did not set and retrieve counts correctly."
assert seg_info[test_label_num][1] == test_label_value, \
"Did not set and retrieve label correctly."
def setUp(self):
self.names = ["Bob", "Dylan", "Doesn't", "Like", "Spam"]
self.count_display = ChromosomeCounts(self.names)
class ChromosomeCountTest(unittest.TestCase):
"""Test the display representation for simple counts on a chromosome."""
def setUp(self):
self.names = ["Bob", "Dylan", "Doesn't", "Like", "Spam"]
self.count_display = ChromosomeCounts(self.names)
def test_add_count(self):
"""Add counts to specific chromosome segments."""
self.count_display.add_count(self.names[1])
self.count_display.add_count(self.names[2], 5)
self.assertRaises(KeyError, self.count_display.add_count,
"Non-existent")
def test_add_label(self):
"""Add labels to chromosome segments."""
self.count_display.add_label(self.names[1], "Rules")
self.assertRaises(KeyError, self.count_display.add_label,
"Non-existent", "elephant")
def test_set_scale(self):
"""Set the scale for a chromosome segment."""
self.count_display.set_scale(self.names[1], 1.5)
self.assertRaises(KeyError, self.count_display.set_scale,
"Non-existent", 5)
def test_color_from_count(self):
"""Retrieve a color from a count number with the default color scheme."""
test_color = self.count_display._color_from_count(3)
self.assertEqual(test_color, colors.blue)
test_color = self.count_display._color_from_count(9)
self.assertEqual(test_color, colors.red)
self.assertRaises(ValueError, self.count_display._color_from_count,
200)
def test_fill_chromosome(self):
"""Test filling out the information on a chromosome."""
test_chr = BasicChromosome.Chromosome("1")
self.count_display.add_count(self.names[2], 5)
self.count_display.add_count(self.names[1], 2)
self.count_display.add_label(self.names[3], "Test-Label")
new_chr = self.count_display.fill_chromosome(test_chr)
def test_get_segment_info(self):
"""Test retrieval of segment information."""
test_count_num = 1
test_count_value = 5
test_label_num = 3
test_label_value = "BigBird"
self.count_display.add_count(self.names[test_count_num],
test_count_value)
self.count_display.add_label(self.names[test_label_num],
test_label_value)
seg_info = self.count_display.get_segment_info()
self.assertEqual(
seg_info[test_count_num][0],
test_count_value,
"Did not set and retrieve counts correctly.",
)
self.assertEqual(
seg_info[test_label_num][1],
test_label_value,
"Did not set and retrieve label correctly.",
)