def test_record_basic(self):
"""Basic test on Record
"""
r = FDist.Record()
assert isinstance(r.data_org, int)
assert isinstance(r.num_pops, int)
assert isinstance(r.num_loci, int)
assert isinstance(r.loci_data, list)
def test_record_basic(self):
"""Basic test on Record
"""
r = FDist.Record()
assert type(r.data_org) == int
assert type(r.num_pops) == int
assert type(r.num_loci) == int
assert type(r.loci_data) == list
def test_record_parser(self):
"""Basic operation of the Record Parser.
"""
for index in range(len(self.handles)):
handle = self.handles[index]
rec = FDist.read(handle)
assert isinstance(rec, FDist.Record)
assert rec.data_org == 0 #We don't support any other
assert rec.num_pops, rec.num_loci == self.pops_loci[index]
for i in range(len(self.num_markers[index])):
assert rec.loci_data[i][0] == \
self.num_markers[index][i]
for i in range(len(self.test_pos[index])):
my_test_pos = self.test_pos[index]
for test in my_test_pos:
locus, pop, pos, value = test
assert(rec.loci_data[locus][1][pop][pos] == value)
def test_record_parser(self):
"""Basic operation of the Record Parser.
"""
for index in range(len(self.handles)):
handle = self.handles[index]
rec = FDist.read(handle)
assert isinstance(rec, FDist.Record)
assert rec.data_org == 0 # We don't support any other
assert rec.num_pops, rec.num_loci == self.pops_loci[index]
for i in range(len(self.num_markers[index])):
assert rec.loci_data[i][0] == \
self.num_markers[index][i]
for i in range(len(self.test_pos[index])):
my_test_pos = self.test_pos[index]
for test in my_test_pos:
locus, pop, pos, value = test
assert (rec.loci_data[locus][1][pop][pos] == value)