def iterator_filter_overlapping_target( psls, options ):
ninput, noutput, ndiscarded = 0, 0, 0
for block in Blat.iterator_target_overlap( psls, options.threshold_merge_distance ):
l = len(block)
ninput += l
if l > 1:
ndiscarded += l
else:
yield block[0]
noutput += 1
E.info( "iterator_filter_overlapping_target: ninput=%i, noutput=%i, ndiscarded=%i" % (ninput, noutput,ndiscarded) )
def iterator_filter_overlapping_target(psls, options):
ninput, noutput, ndiscarded = 0, 0, 0
for block in Blat.iterator_target_overlap(
psls, options.threshold_merge_distance):
l = len(block)
ninput += l
if l > 1:
ndiscarded += l
else:
yield block[0]
noutput += 1
E.info("iterator_filter_overlapping_target: ninput=%i, noutput=%i, "
"ndiscarded=%i" % (ninput, noutput, ndiscarded))
