Esempi in Python per PipelineIDR.countPeaks

Esempio n. 1

File: pipeline_idr.py Progetto: jmadzo/cgat

def summarizePeaksForPooledPseudoreplicates(infiles, outfile):
    outf = IOTools.openFile(outfile, "w")
    outf.write("Sample_id\t"
               "Experiment\t"
               "Tissue\t"
               "Condition\t"
               "Pseudoreplicate\t"
               "n_peaks\n")
    IDR.countPeaks(infiles, outf)

Esempio n. 2

def summarizePeaksForPooledPseudoreplicates(infiles, outfile):
    outf = IOTools.openFile(outfile, "w")
    outf.write("Sample_id\t"
               "Experiment\t"
               "Tissue\t"
               "Condition\t"
               "Pseudoreplicate\t"
               "n_peaks\n")
    IDR.countPeaks(infiles, outf)