def __call__(self, dataframe, path):
# convert to dataframe
# index has test names
# columns are description, info, status
columns = ('description', 'info', 'status', 'name')
if set(dataframe.columns) != set(columns):
raise ValueError("invalid columns: expected '%s', got '%s' " %
(columns, dataframe.columns))
lines = []
dirname = os.path.join(os.path.dirname(
sys.modules["CGATReport"].__file__), "images")
descriptions = {}
title = "status"
# add header
lines.append(".. csv-table:: %s" % "table")
lines.append(' :header: "Track", "Test", "", "Status", "Info"')
lines.append('')
rows = []
for index, values in dataframe.iterrows():
testname = values['name']
status = values['status']
try:
image = ".. image:: {}\n :width: 32".format(
os.path.join(dirname,
self.map_code2image[status.upper()]))
except KeyError:
image = ""
rows.append({
"test": testname,
"description": values["description"],
"info": values['info'],
"status": status,
"track": path2str(index),
"image": image,
})
descriptions[testname] = values["description"]
# filter and sort table
table = [self.columns]
table.extend([[row[x] for x in self.columns] for row in rows])
lines = Utils.table2rst(table).split("\n")
if self.display_legend:
lines.append(".. glossary::")
lines.append("")
for test, description in descriptions.items():
lines.append('%s\n%s\n' % (Utils.indent(test, 3),
Utils.indent(description, 6)))
return ResultBlocks(ResultBlock("\n".join(lines), title=""))
def __call__(self, dataframe, path):
# convert to dataframe
# index has test names
# columns are description, info, status
columns = ('description', 'info', 'status', 'name')
if set(dataframe.columns) != set(columns):
raise ValueError("invalid columns: expected '%s', got '%s' " %
(columns, dataframe.columns))
lines = []
dirname = os.path.join(os.path.dirname(
sys.modules["CGATReport"].__file__), "images")
descriptions = {}
title = "status"
# add header
lines.append(".. csv-table:: %s" % "table")
lines.append(' :header: "Track", "Test", "", "Status", "Info"')
lines.append('')
for index, values in dataframe.iterrows():
testname = values['name']
description = values['description']
info = values['info']
status = values['status']
track = path2str(index)
descriptions[testname] = description
try:
image = ".. image:: %s" %\
os.path.join(dirname, self.map_code2image[status.upper()])
except KeyError:
image = ""
lines.append(
' "%(track)s", ":term:`%(testname)s`", "%(image)s", "%(status)s", "%(info)s"' %
locals())
lines.append("")
lines.append(".. glossary::")
lines.append("")
for test, description in descriptions.items():
lines.append('%s\n%s\n' % (Utils.indent(test, 3),
Utils.indent(description, 6)))
return ResultBlocks(ResultBlock("\n".join(lines), title=""))
