from nipype.interfaces import fsl
from CPAC.utils.interfaces.function import Function
from CPAC.qc.qc import (create_montage, create_montage_gm_wm_csf, qa_montages,
create_qc_snr, create_qc_motion, create_qc_fd,
create_qc_skullstrip, create_qc_carpet, afni_Edge3)
from CPAC.qc.utils import (
register_pallete,
generate_qc_pages,
)
# register color palettes
palletes = ['red', 'green', 'blue', 'red_to_blue', 'cyan_to_yellow']
for pallete in palletes:
register_pallete(p.resource_filename('CPAC', 'qc/colors/%s.txt' % pallete),
pallete)
def create_qc_workflow(workflow, c, strategies, qc_outputs):
qc_montage_id_a = {}
qc_montage_id_s = {}
qc_plot_id = {}
qc_hist_id = {}
for num_strat, strat in enumerate(strategies):
nodes = strat.get_nodes_names()
if 'functional_preprocessed' in strat:
preproc, out_file = strat['functional_preprocessed']
create_qc_fd,
create_qc_skullstrip,
create_qc_carpet,
afni_Edge3
)
from CPAC.qc.utils import (
register_pallete,
generate_qc_pages,
)
# register color palettes
palletes = ['red', 'green', 'blue', 'red_to_blue', 'cyan_to_yellow']
for pallete in palletes:
register_pallete(
p.resource_filename('CPAC', 'qc/colors/%s.txt' % pallete),
pallete
)
def create_qc_workflow(workflow, c, strategies, qc_outputs):
qc_montage_id_a = {}
qc_montage_id_s = {}
qc_plot_id = {}
qc_hist_id = {}
for num_strat, strat in enumerate(strategies):
nodes = strat.get_nodes_names()
if 'functional_preprocessed' in strat: