def calculateFitnessLine(em: EvolutionModel, framsCLI: FramsticksCLI,
num_points: int, magnitude: float):
zero_point = em.means
#direction = np.random.multivariate_normal(em.means_mut, em.cov * magnitude, size=1)[0]
direction = (np.random.rand(em.config['cells'] * 2) - 0.5) * 2
direction /= np.linalg.norm(direction, ord=2)
direction *= magnitude
all_points = np.array([
zero_point + direction * (i - num_points)
for i in range(2 * num_points)
])
frams = em.decode_latents(all_points)
# print(frams)
validity = framsCLI.isValid([em.config['prefix'] + fram for fram in frams],
'')
frams_inds = [
(fram, ind)
for fram, valid, ind in zip(frams, validity, range(len(frams)))
if valid
]
validLen = len(frams)
print("Valid points: " + str(validLen))
frams = [fram for fram, ind in frams_inds]
inds = [ind for fram, ind in frams_inds]
eval_result = framsCLI.evaluate(
tuple(prep_genos(frams, em.config['representation'])))
fitness, bad_mutants_temp, good_inds = extractFitnesses(
eval_result, list(range(len(frams))))
frams = [fram for i, fram in enumerate(frams) if i in good_inds]
inds = [ind for i, ind in enumerate(inds) if i in good_inds]
frams_fitn = list(zip(frams, fitness))
# print(frams_fitn)
return inds, fitness
def checkValidity(genos, howMany, config):
framsCLI = FramsticksCLI('C:/Users/Piotr/Desktop/Framsticks50rc17', None)
total_acc, xs, accs, ys = get_Accs(genos, howMany, framsCLI, config)
framsCLI.closeFramsticksCLI()
return total_acc, xs, accs, ys
def createCLI(self, level=0):
self.pid_version += 1
if level > 20:
raise ConnectionError("FramsCLI recursion over 20")
try:
if self.framsCLI is not None and level < 10:
self.framsCLI.closeFramsticksCLI()
framsCLId = FramsticksCLI(self.config['frams_path'], None if 'framsexe' not in self.config else self.config['framsexe'],
pid=self.config['model_name'] + "_" + str(level) + (
'' if 'pid_extension' not in self.config else self.config['pid_extension']) +
"_" + self.pid_extra_extension + "_" + str(self.pid_version),
importSim=self.config['importSim'], markers=self.config['markers'], config=self.config)
print("OK_CORRECTLY CREATED__", level)
except Exception as e:
self.createCLI(level=level + 1)
return
self.framsCLI = framsCLId
self.framsCLI.invalidCnt = self.invalidCnt
self.framsCLI.validCnt = self.validCnt
self.framsCLI.em = self
if self.config['locality_type'] == 'dissim' or self.config['locality_type'] == 'fitness':
self.dissimilarity = self.framsCLI.dissimilarity
elif self.config['locality_type'] == 'levens':
self.dissimilarity = dissimilarity_lev
else:
self.dissimilarity = dissimilarity_rand
def get_mutants_f9(framsCLI: FramsticksCLI,
evolutionModel,
centroid,
times,
diversity,
level=0):
mutants = []
while len(mutants) < times:
mutant = prep_genos([centroid],
repr=evolutionModel.config['representation'])[0]
for i in range(diversity):
mutant = framsCLI.mutate(mutant)
mutants.append(mutant)
return mutants
def mutateF(framsCLI: FramsticksCLI,
evolutionModel,
centroid,
times,
diversity,
level=0):
try:
return framsCLI.ask_for_genos(
prep_genos([centroid],
repr=evolutionModel.config['representation']), times,
diversity, 30)
except:
print('mutateF error level: ', level)
return mutateF(framsCLI, evolutionModel, centroid, times, diversity,
level + 1)
def createCLI(self, level=0):
if level > 20:
raise ConnectionError("FramsCLI recursion over 20")
try:
if self.framsCLI is not None and level < 10:
self.framsCLI.closeFramsticksCLI()
framsCLId = FramsticksCLI(self.config['frams_path'], None if 'framsexe' not in self.config else self.config['framsexe'],
pid=self.config['model_name'] + "_"+ str(level) + (
'' if 'pid_extension' not in self.config else self.config['pid_extension']),
importSim=self.config['importSim'], markers=self.config['markers'], config=self.config)
print("OK_CORRECTLY CREATED__", level)
except Exception as e:
self.createCLI(level=level + 1)
return
self.framsCLI = framsCLId
self.framsCLI.invalidCnt = self.invalidCnt
self.framsCLI.validCnt = self.validCnt
self.framsCLI.em = self
def createCLI(config, oldCLI=None, level=0):
if level > 20:
raise ConnectionError("FramsCLI recursion over 20")
try:
if oldCLI is not None:
importSim = oldCLI.importSim
markers = oldCLI.markers
else:
importSim = config['importSim']
markers = config['markers']
if oldCLI is not None and level < 10:
oldCLI.closeFramsticksCLI()
framsCLId = FramsticksCLI(
config['frams_path'],
None if 'framsexe' not in config else config['framsexe'],
pid=config['model_name'] + str(level) +
('' if 'pid_extension' not in config else config['pid_extension']),
importSim=importSim,
markers=markers,
config=config)
print("OK_CORRECTLY CREATED__", level)
except:
return createCLI(config, oldCLI, level=level + 1)
return framsCLId
def ask_for_genos(self, starting_genos, generate_size, diversity, timeout=None):
chosen_cli = self.find_not_busy()
f = lambda cli_handler: FramsticksCLI.ask_for_genos(cli_handler.framsCLI,starting_genos, generate_size, diversity, timeout)
# cli_f = partial(FramsticksCLI.ask_for_genos, chosen_cli, starting_genos, generate_size, diversity, timeout)
return self.e.submit(clihandler_runf, chosen_cli, f, self.lock)
def get_simplest(self, genetic_format):
chosen_cli = self.find_not_busy()
f = lambda cli_handler : FramsticksCLI.getSimplest(cli_handler.framsCLI, genetic_format)
# cli_f = partial(f, chosen_cli, genetic_format)
return self.e.submit(clihandler_runf, chosen_cli, f, self.lock)