tdf.PCR_P.PCR_T = 60
searcher = SearchEngine(abort_event)
cProfile.runctx(
'for x in xrange(10): searcher._find(WorkCounter(), template, primer, len(template), len(primer), 6)',
globals(), locals(), 'SearchEngine._find.profile')
matches = searcher._find_mp(WorkCounter(), template[:2000], primer,
len(template), len(primer), 6)
cProfile.runctx(
'for x in xrange(10): searcher.compile_duplexes(WorkCounter(), *matches)',
globals(), locals(), 'SearchEngine.compile_duplexes.profile')
f = 'test_search_results.txt'
dups = searcher.compile_duplexes(WorkCounter(), *matches)
if not os.path.isfile(f):
with open(f, 'w') as out:
out.write(str(dups))
sys.exit()
else:
with open(f, 'r') as inp:
if str(dups) != inp.read():
with open(f + '.wrong', 'w') as out:
out.write(str(dups))
raise RuntimeError(
'compiled duplexes differ from the standard')
def mem_test(num):
for _n in xrange(num):
t0 = time()
