def test_get_sequence_stranded(self):
TOR1A_uid = get_all_transcripts("TOR1A",
"grch38")[0]["qualifiers"]["uid"]
TOR1A = Transcript(TOR1A_uid, "grch38")
sequence_positive = TOR1A.get_seq()
sequence_negative = TOR1A.get_seq(True)
self.assertEqual(
Seq(sequence_positive).reverse_complement(), sequence_negative)
def test_get_seq(
self
): ########################################################################3
XKR8_uid = get_all_transcripts("XKR8",
"grch38")[0]["qualifiers"]["uid"]
transcript = Transcript(XKR8_uid, "grch38")
seq = transcript.get_seq()
self.assertEqual(
seq,
"GAGGGCTGCGCCCACCTCCTTCCTGCCTCGGCAACCCCGGGCCCTGAGGGCAGGCCCCAACCGCGGAGGAGCAGGAGAGGGCGGAGGCCGGCGGGCCATGCCCTGGTCGTCCCGCGGCGCCCTCCTTCGGGACCTGGTCCTGGGCGTGCTGGGCACCGCCGCCTTCCTGCTCGACCTGGGCACCGACCTGTGGGCCGCCGTCCAGTATGCGCTCGGCGGCCGCTACCTGTGGGCGGCGCTGGTGCTGGCGCTGCTGGGCCTGGCCTCCGTGGCGCTGCAGCTCTTCAGCTGGCTCTGGCTGCGCGCTGACCCTGCCGGCCTGCACGGGTCGCAGCCCCCGCGCCGCTGCCTGGCGCTGCTGCATCTCCTGCAGCTGGGTTACCTGTACAGGTGAGTGCTTCGCCCCGGGAGGGGAGGAGTGTCGGAGCCCAGCACCTCCGTCAGCTGGGTCACCTGTACAGGTGACACGCCATATGCCGGGAAGGGGACTGGGAGAGGGAACCAAGTCCTGTGGGCGCCTGGCCTACAGGTGAGCGTGCAGCCCTTTACGGAAAGGGAATCCCGGTAGACTGCCTTCATTCTAGCCCTAGCTTTCCTGGCACAGGCGAAGAAACTGAGGCCCAGGGAAGAAAGGGAGGCGCATGGGCTTTGAAGTCGGACCTCTCAGGGATCCACTTCTGGCTTTGCCCCCTCTCGCCTCACTTCTGCATTTCTCTGAGCCTCAGTTTCCTCCTGCGTAGAAAGGAGGTAGTCACCCTGAGACAGGTGTGACGGGCAGGCCTGTTGTGAAGAGTGAGCGAAAGAATGAGAAAGTGCCTCGCACAGTGCCTGGCCTGTAATGGCAGGGGCTGCGGACTCAGTTCAGCATCCCATGTTTCAGCATGGGCAGGGCCTTGGGAAGTCACTGACCTCTCAGTGGGGCTGTTTGGTTGCTGTTCCCATTGGGATGGGGATAGCGCCTGCCCGTTTGGTGAAGATGCAGTGAAATGACATCTGTCCACTGCCCTGGCTCAGAGTGAGCACTCAGCAACCTCAGCTGGCTTCTTGACCTGGGCCTCCCTGGGAGTTTCAGCAGCCCTGACCCCACCACAGCGCTTGCCCCTCACAAAGGCCGCCTCTCACCCTGTCTGCCTGGTTGTATTCTTCCCCCTGAAACTTGGCTTCCCACCCCAGACCCAGCAAGAGGGCAGAGATGGCCTCTGACTCATCCATGCCCATGGAGCCAGCCAGGGCTGGGCATAGGCTGGGTCCTGGAAAATGTGTGTGGATTCTGCTCCTTTTTGGACCTGGTGGAGCCTCGTAGAGATGGGAAAACAAACCCAAGGCTCAGAGGCATGCGACAAAGTCAGGGCAGAGGGTGGTGTGGGTTGGGATGGGGTGGCCAGGGCCAGGATCTGCTCTTGAATCCGTTTTTACAAACTCTTGAGATCTGGCCTTGACAAAGCCACACGGAGTCTCCAGGAGTGGAAGAGAGGAGCTTTGAATGTGGCAGTTTTGCCTGAGGGATTATAGAGACATCAGAAAACCCCGGGTGGGCATGAAGGGGTGCAGTTGTTAAGTCCTGGGCAGGCCTCCATGAGCCGTGAATCTGTAACTACCTTATGCATCTTTGTGGCCAATATTTCTGCTGAGCTTGAGTCAGACAGACTGTACTAGCTTTGGCTTTGGAAATGGGTCTCTGTTCCTGCCTGTGAATTGGCCGAGGCAGGGGTCCCTGCTAGGTCACTGGGGACCATAGGCAAAGGCTCCTGCTGAGGGAGAACCCCAGCCTGTCCTGCCTGCCTGCTCCTCAGTGTGTTCTTGTGTCCTTCCAGGGGAAGTGACAGTACATGTCTGGTGAATGAGCTTGTGATGAGTGAACGGGGTTCTCTCCCAATAGGCAACTGAGAGCAAAGTTCTGGGTGGAGGGTCCTTGGTGCATCCTCCACTTACTCTTCATGCCAGTGGGTACCCCAGACCTGTCTGTCCAAACTCTGGACTCTCTTAACTCCGCCCCAATCTCCATCCTTAACCACTCAGGGCCAGCCTCTTAAATGGGATCCCTCCTTCCAATCTAACCCTCCTCCAGCCCCTCCCCTGTGTGGCCGGGGCAAGGCAGAGTCTGATTCCATCTGGCCTGTGCCCAGAAGTGCCCAAGAGGCAAATGTCCTCTTGCCCACAGGACCCCAGGAGATCTTGGGCACACTAAAGTTTGAGAACTACTGCCTCAGGCAACTTTATAGCATGCCTTTCCAATTCAGGTTTGGATCCAAATCCTCATTCCAGTACTTATTAGCTGCTTATAATTTTTTGTTTGTTTTTTAAAAAGAGGTAGGGTCTGGTCAGGCTTGGTGGCTCATGCCTGTAATCCTAGCAGTCTGGGAGGCTGACGTGGGTGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGCTGAACATGGCAAAAGCTCATCTCTACAAAAATTAGCCAGGTGTGGTGGCGCATGCCTGTAATCCCAGCATCCCAGCTACTCTGGAGGCCGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCGAGTTTGTGCCACTGCACTCTAGCCTGGGCGACAAGCGACAGATGTAGACTCTGTCTCCAAAAAAAAAGAAAAAAAAAAAGAGAGAGAGAGGCAGGGTCTCTGTTGCCTGGGCTGGAGTGCAGTGGCACAATCAATCATGGCTCACAGTGGCCTTGAACTCCTGGGCTCAAGCTGTCCTCCTGCGTCAGCCTCCTGAGTAGCTTGGACTACAGGCTTGTACCACCACGTCCAACTAATTAAAAAAAATTCTTTGTAGAGATGGGGCTTGCTGTGTTGCCCAGGGTGGTCTCAAACTCCTGGCCTCCAGTGATCCTCTTGCCTTGGCCTGTCAAAATGTTGGGATTACAGGCGCGAGCCACTGCACCCAGACCTTATTAGCTTCTTGATCCTGTTTCCCCATCTGTAAAATGGGCTTTTGTGAGAAGTAAACAGGACAAGGTTTGTGATGAGCTTGGGACAGTGCTTAGCCAGCGGGAGTAGAAGGTGTATTGATCCCCATTTTTGCTTTTTTGTTTTTTTTGAGACGGAGTCTTGTTCTGTCGCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGTAACCTCCGCCTTGCAGATTCAAGAGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCGCACCACCACACCCAGCTAATTTTTTGTATTAGTAGAGACGAGGCTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGAACTCGTGATCAGCCCGCCTCAGACTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACACCCGGCCTCGATCCTCATTTTACAGATGAAACAAGTTCAGTGAGGTTAGGACATTGCCGAAGGCCCCATAGCATGGATGTGAGGAGACAGGTTGGAGCCTGTGTCCACTCATTAGATGGGTGGGAGGCTGAGGAATTCACAGGACACTAACCTGGCCCTCTGGGCATTTGTGTGTGGTGCCTAGGTGCGTGCAGGAGCTGCGGCAGGGGCTGCTGGTGTGGCAGCAGGAGGAGCCCTCTGAGTTTGACTTGGCCTACGCCGACTTCCTCGCCCTGGACATCAGCATGCTGCGGCTCTTCGAGACCTTCTTGGAGACGGCACCACAGCTCACGCTGGTGCTGGCCATCATGCTGCAGAGTGGCCGGGCTGAGTACTACCAGTGTGAGTGAAGGCCTGTGGCTGGCCCCCCTGTCGTGGCTTGGTGGGGGGTCTCTCAAATGTTGGAACTGTTTTTAGTCTTTTATAAAGGCTGCTTAGAAAACAGGAGAACAGGCTTTAGTCAGGCAGATCTGGCTTGAAACCTAAAGTCACTCTACAGCTGTTTGAGTTTGGACAAATGCCTTGACCTCTCTGAGTATGTTTGTTCTCATCTGAAATATGGGCTTAAATCCTCCTGCCTCATAAGGTTGATGAAAGGATTAAATGAGGTGATGCAAAGAAAGCCCATTTCCTGGTACATAAGTTCCTGGTACAGAGTCTCACTCTGTCATCGCCCGTAGTGGAGTACAGCAGCCTGATCATGGCTCACTGTAGCCTCCACCTCCCAGGCTCAAGTGATCCTCCTGTCTCAGCCTCCTGAGTAGCTGGGACTACAAGTGTGTATCACCATGCTGGCTAATTTTTCTTTCTTTTTTTTTTTTTTTTTTTTGTAGAGACGAGGTCCCACTTTGTTACCCAGGCTGGTCTTGAACTCCTGAGCTCAAGTAACCTCCTACCTCAGCCTCCTAAGGTGCTGGGATTACAGGTGTCGCCCACTGTGCCTGGCCCACAAGTCTTAATTGTAATTTTTATAATTTTGAAGATAATGAAGTGTGTAAGGTGCCTGATACAGCATAGGTAACTTTTTAGTTAAGAAACAATTTCATACGTTGGGAGGCCAAGGTGCACAGGTCGCTTGAGGCCAGAGTTGGAGACCATCCTGGGTAACATAGTGAGACCTCATCTCTTCAAAATTTTAAAAGAGAAACAAGAAACAATATATTGAATGCCTTCATCCAGTCAGGTTTTCATTGTGCATCTCTTCTGTGCCTGTTACTGTGCTGGGGACACAGCAGTGAACAAGATGAACCCAGCCCCTGCCCTGCCAGGATGATAGACTAAAACAAGTAGCTACGGTTGAGTGACTGGAAAAGGGAGAGGCAGGGAGCAGAGGATCACAGGGCCCCCTAAGCATGGGTGAAGTTTACAGTGAGGAGCTTTGGGAGGGTTTTTGCATGAAAGGAAAGTGACTTGCCCATTTCCACAGACCTGGACAGTGGCCAAGCTAAAGAGGGCCCCCACTCACATCCGACTCAGGGTCCAAGCCTTCCCCTTTGCCTTCCTCCACCGCTGCCATAAATGCCACAGCCTCTCAAGAAACCAGTCCTCACTCTACCGTCACTCGCTGTGTGACCTGGAGAGCCTTCCTGTGGAAGATGGAGGTTGGACTCGATCTCCAAGGGCCCTTTCGTCTTGCTAGTCTGAGTCTATATATTGATTGAAAAAACAATAATAGCGGCTGTCACAATCGAGTGCCAGCTATTAGCCAGGCCCTGTGGGAAGCACTTACAGTCATCATTGCTCATGTTCACAGCAGCCCTGTAGGTTTGTGCTATATTGATCTTCATTTTTAAAGAGGTGCAGAAAGGTGAGTGACTTGCCCTGGGTTACTGGGCACTCACTGGGCACACGTCTTTGTCTGTTGAGGGTTGGGGGTGTCTAGAACCAGGGCCAAGTGCAGACAGTCTGCACTGTGAGTGTGGCAGGGGGTAAGGGGGCGAGACAGATTTTCCCTACTTTTTATTTAGCAAACATCTCTTTCGCTGCTGTTATGTGCCAGGTACTGGGCTGCTGGGGGATCCCAAGTGAGCAGAGTCTGTTTTCTACCCTCGAGGAGCCCAGAGATAAGGAAATAGATAATTACTGTGTGATGAGACTCCAGACAGAGGTGGGTGGCATGTTACAGGGATACCTGACACAGCTGAGTGGGTGGCATGGGGTCAGGGTGGGTGACTCCCGGGGCTCTTCAAGCTGGGGCCTGCGGGGTAATGGAGGAGTAGGCCGGGGAAGTGGGGCCTGTGCTTCTGGCGACCTAACATCCTGGGCAGAGCTTGTCAAGGTCACGGAAGGTGGCATGCTGGGCAAACTGGAAGAACATCAGCCCTGCTGAGACCTGGGCAAGGCTAATGAGCACAGATCTGTTTCCAGGCTAGGAGTGGGTTCTGGGCGCCTAATAGGTTCCCAGTAAACATCTGTCGAATGACTGCGGTGGACGGGGACAGGGGAGGAAGCAGTCGGGAGACGTGCCGGTGCCACTTCCATCCCTCCCTGGAGGCCCTTGTGCTTCTGCTCCAGGATTGGCAACCAGGAGGTGGGATAGGACCCCTGTTGTAAACTTCTGGATCTTGGAAAATCAAGGTTAGGGGTCAGTCCGATGGCCTCTGGTCTTGGAGGGGAGGGGAGGGGAGTGGGGAGACCTTCTGTCCACACAGCAGGGACATCTCTCCTGGCCCTGAGGGCAGCTTTAGCCAGAGCCTGTTGCCACCCCATGGGATTTTCTACTCCCTTTTTGAGACTAAGAAAGACGGAACTGAGACTGTTGATTTTTAGACACAAGGAAGGCTTGTGTTCTTCCCAGAAAGAAAGGGTTATGGGGCCCTGGAAGATGCCCAGGATGCAGCCAAGGCCCAGGGGTGCTGAGTGCTGGGTGGGCCACAGGTCACATCCTCTCATCTTTGACAAATACCACCCGGATAGCACCTACGCAGCAAAGCGCTGTGGTGAGGGGCAGGCTCTATATTAGGAGTCATAGCTTTGTTTTTGGTTGTGGGAACTCACTGGGTCTTCTCTAGCTGCAGATTTGCCTTCAACAAACGAGGGATTCTAATACCTACCCCAGGGTTGCTGGGAGGGCCCCCACGGTACCTGTGACCGCTGGGGAGTGCCAAGCAGGCTGGCCCCAGGACTCACTGTTCCCTCCTACTCTTTGCAGGGGTTGGCATCTGCACATCCTTCCTGGGCATCTCGTGGGCACTGCTCGACTACCACCGGGCCTTGCGCACCTGCCTCCCCTCCAAGCCGCTCCTGGGCCTGGGCTCCTCCGTGATCTACTTCCTGTGGAACCTGCTGCTGCTGTGGCCCCGAGTCCTGGCTGTGGCCCTGTTCTCAGCCCTCTTCCCCAGCTATGTGGCCCTGCACTTCCTGGGCCTGTGGCTGGTACTGCTGCTCTGGGTCTGGCTTCAGGGCACAGACTTCATGCCGGACCCCAGCTCCGAGTGGCTGTACCGGGTGACGGTGGCCACCATCCTCTATTTCTCCTGGTTCAACGTGGCTGAGGGCCGCACCCGAGGCCGGGCCATCATCCACTTCGCCTTCCTCCTGAGTGACAGCATTCTCCTGGTGGCCACCTGGGTGACTCATAGCTCCTGGCTGCCCAGCGGGATTCCACTGCAGCTGTGGCTGCCTGTGGGATGCGGCTGCTTCTTTCTGGGCCTGGCTCTGCGGCTTGTGTACTACCACTGGCTGCACCCTAGCTGCTGCTGGAAGCCCGACCCTGACCAGGTAGACGGGGCCCGGAGTCTGCTTTCTCCAGAGGGGTATCAGCTGCCTCAGAACAGGCGCATGACCCATTTAGCACAGAAGTTTTTCCCCAAGGCTAAGGATGAGGCTGCTTCGCCAGTGAAGGGATAGGTGAACGGCGTCCTTTGAAGCAGGATCAGACCCAGCCAGCAGAGATGGAGAGTGACTCTGTTGGCAGAAGGCAGGCGAGGATAAGCTAACGATGCTGCTGTGGCCTCTATGCACTCAGCAAGAGCGGGACGCCTGTGCTGGGCCGGGCACCAGGGATGGTGCTGAGTCGGGCAGAGGCCTCCTTTCAAGGAGTTCACAGTGAACAAGATGAGAAGGGCTGGGCCCTGGAGGGTCAAGAGCCCCAATTATGTACAAGACACTTTGGGAGGAAAGAAGACTACCTTTTCCCCCTGCCATTGGTATAGCTGGTGCCCCAAAACTTCCACCTCCCTCCCTGGCTACCTCTAAAATGACTGGTATAGGTGCTGCCCCACCCCTTAGCTCCCCTATCCTGGGCTAGGAGGCCACAGGGGCTGTCCTCTAGAATTCTTCCTTCCCTCCCCCACACCATTCATTCAATTCATGAAACAAATCTTTGCCAAGAGCAGTTTATGTGCCAGGAACATCATTCTGTCCTTGCAACCTGGAACAAGACCAGCTACCAGCCTAGCTTCATCCGCTACTTGCACCAACCAGTCCCGGGTTAGATCCCAAATGCTAGAAGCCAGGGATGCCCAACTCTGGGTGGCCCCAGTCAGAACCTCTGGGATCTCAGTGAAGCTGGCCTGGCCTCTGCTCCTGCTCTCAAGGGGCTGCTTTTCAACCAAGAGCCTTGTGAGCCTGGTCTGAGCCTTGCACAGCCACTGAGTATTTTTTTTGCCTTAGCCAGTGTACCTCCTACCTCAGTCTATGTGAGAGGAAGAGAATGTGTGTGCCTGTGGGTCTCTACAAGTGACAGATGTGTTGTTTTCAACAGTATTATTAGGTTATGAATAAAGCCTCATGAAATCCTC"
.upper())