def _run_runscript_on_grid_engine(self, grid_engine_job_name,
python_script_with_path):
no_queue = ''
no_max_memory = ''
no_cluster = ''
using_runscript = True
GUM.build_job_q_bash(grid_engine_job_name, no_queue, no_max_memory,
no_cluster, using_runscript, self.foldx_path,
python_script_with_path)
subprocess.call('qsub job.q', shell=True)
def _run_repair_on_grid_engine(self, pdb_name):
repair_python_script = 'repair.py'
self._print_OptProt_calling_script(repair_python_script)
grid_engine_job_name = self.repair_job_prefix + pdb_name
no_queue = ''
no_max_memory = ''
no_cluster = ''
using_runscript = False
python_script_with_path_and_qsub = self.scripts_path + '/' + repair_python_script + \
self.space + self.qsub_path
GUM.build_job_q_bash(grid_engine_job_name, no_queue, no_max_memory,
no_cluster, using_runscript, self.foldx_path,
python_script_with_path_and_qsub)
subprocess.call(self.qsub_path + 'qsub job.q', shell=True)
os.chdir(self.start_path)