def stageData(self, m):
y0 = float(self.keywords.get(
"y0", 1994.)) # [yr] beginning year to include in analysis
yf = float(self.keywords.get(
"yf", 2007.)) # [yr] end year to include in analysis
obs = Variable(filename=self.source,
variable_name=self.variable,
alternate_vars=self.alternate_vars)
#if obs.time is None: raise il.NotTemporalVariable()
self.pruneRegions(obs)
mod = m.extractTimeSeries(self.variable,
alt_vars=self.alternate_vars,
expression=self.derived,
initial_time=(y0 - 1850) * 365,
final_time=(yf - 1850) * 365,
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
# remove the time dimension
obs = obs.integrateInTime(mean=True)
mod = mod.integrateInTime(mean=True)
return obs, mod
def stageData(self, m):
obs = Variable(filename=self.source,
variable_name=self.variable,
alternate_vars=self.alternate_vars)
t0 = obs.time_bnds[0, 0]
tf = obs.time_bnds[-1, 1]
climatology = False if obs.cbounds is None else True
if climatology:
t0 = (obs.cbounds[0] - 1850) * 365.
tf = (obs.cbounds[1] + 1 - 1850) * 365.
mod = m.extractTimeSeries(self.variable,
alt_vars=self.alternate_vars,
expression=self.derived,
initial_time=t0,
final_time=tf,
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
if obs.layered and not mod.layered:
obs = obs.integrateInDepth(z0=0, zf=0.1, mean=True)
if climatology:
mod = mod.annualCycle()
mod.time = obs.time.copy()
mod.time_bnds = obs.time_bnds.copy()
obs, mod = il.MakeComparable(obs,
mod,
mask_ref=True,
clip_ref=True,
extents=self.extents,
logstring="[%s][%s]" %
(self.longname, m.name))
return obs, mod
def stageData(self, m):
energy_threshold = float(self.keywords.get("energy_threshold", 20.))
sh = Variable(filename=os.path.join(os.environ["ILAMB_ROOT"],
"DATA/sh/GBAF/sh_0.5x0.5.nc"),
variable_name="sh")
le = Variable(filename=os.path.join(os.environ["ILAMB_ROOT"],
"DATA/le/GBAF/le_0.5x0.5.nc"),
variable_name="le")
obs = Variable(name=self.variable,
unit="1",
data=np.ma.masked_array(
le.data / (le.data + sh.data),
mask=((le.data < 0) + (sh.data < 0) +
((le.data + sh.data) < energy_threshold))),
lat=sh.lat,
lat_bnds=sh.lat_bnds,
lon=sh.lon,
lon_bnds=sh.lon_bnds,
time=sh.time,
time_bnds=sh.time_bnds)
if obs.time is None: raise il.NotTemporalVariable()
self.pruneRegions(obs)
sh = m.extractTimeSeries("hfss",
initial_time=obs.time_bnds[0, 0],
final_time=obs.time_bnds[-1, 1],
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
le = m.extractTimeSeries("hfls",
initial_time=obs.time_bnds[0, 0],
final_time=obs.time_bnds[-1, 1],
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
mod = Variable(name=self.variable,
unit="1",
data=np.ma.masked_array(
le.data / (le.data + sh.data),
mask=((le.data < 0) + (sh.data < 0) +
((le.data + sh.data) < energy_threshold))),
lat=sh.lat,
lat_bnds=sh.lat_bnds,
lon=sh.lon,
lon_bnds=sh.lon_bnds,
time=sh.time,
time_bnds=sh.time_bnds)
obs, mod = il.MakeComparable(obs,
mod,
mask_ref=True,
clip_ref=True,
logstring="[%s][%s]" %
(self.longname, m.name))
return obs, mod
def stageData(self, m):
"""Extracts model data and transforms it to make it comparable to the runoff dataset.
Parameters
----------
m : ILAMB.ModelResult.ModelResult
the model result context
Returns
-------
obs : ILAMB.Variable.Variable
the variable context associated with the observational dataset
mod : ILAMB.Variable.Variable
the variable context associated with the model result
"""
# Extract the observational data for basins
obs = Variable(filename=self.source,
variable_name=self.variable).convert("mm d-1")
# Extract the globally gridded runoff
mod = m.extractTimeSeries(self.variable,
alt_vars=self.alternate_vars,
initial_time=obs.time_bnds[0, 0],
final_time=obs.time_bnds[-1, 1])
# We want annual mean, not monthly mean
years = np.asarray([obs.time_bnds[::12, 0], obs.time_bnds[11::12,
1]]).T
obs = obs.coarsenInTime(years)
mod = mod.coarsenInTime(years)
obs.name = "runoff"
mod.name = "runoff"
# Operate on model data to compute mean runoff values in each basin.
data = np.ma.zeros(obs.data.shape)
for i, basin in enumerate(self.basins):
b = il.ClipTime(mod.integrateInSpace(region=basin, mean=True),
obs.time_bnds[0, 0],
obs.time_bnds[-1, 1]).convert(obs.unit)
data[:, i] = b.data
# Create a variable to return for the model
mod = Variable(name=obs.name,
unit=obs.unit,
data=np.ma.masked_array(data, mask=obs.data.mask),
time=obs.time,
time_bnds=obs.time_bnds,
ndata=obs.ndata,
lat=obs.lat,
lat_bnds=obs.lat_bnds,
lon=obs.lon,
lon_bnds=obs.lon_bnds)
return obs, mod
def GetSlope(v):
# loop over unmasked cells and compute slope wrt depth
def _dindx(v, S0=200, Sc=1000):
# find the index for 200 and 1000 m
dZ = np.asarray(getattr(v, 'depth'))
i0 = np.argmin(abs(dZ - S0))
ic = np.argmin(abs(dZ - Sc))
vdiff = dZ[ic] - dZ[i0]
print('level {:2d}-{:2d} in {:6.2f}-{:6.2f}m time is {}'.format(
i0, ic, dZ[i0], dZ[ic], v.time))
return i0, ic, vdiff
i0, ic, vdiff = _dindx(v)
with np.errstate(under='ignore'):
# dTdZ = (v.data[i0,...]-v.data[ic,...])/vdiff*1e3
dTdZ = sc_fit(v)
dTdZ.shape = (1, ) + dTdZ.shape
slope = Variable(time=np.asarray([0.5]),
time_bnds=np.asarray([[0., 1.]]),
data=dTdZ,
lat=v.lat,
lat_bnds=v.lat_bnds,
lon=v.lon,
lon_bnds=v.lon_bnds,
unit='1e-3 degC/m')
return slope
def _extendSitesToMap(self, var):
"""A local function to extend site data to the basins.
Parameters
----------
var : ILAMB.Variable.Variable
the site-based variable we wish to extend to basins
Returns
-------
extended : ILAMB.Variable.Variable
the spatial variable which is the extended version of the
input variable
"""
# determine the global mask
global_mask = None
global_data = None
for i, basin in enumerate(self.basins):
name, lat, lon, mask = Regions._regions[basin]
keep = (mask == False)
if global_mask is None:
global_mask = np.copy(mask)
global_data = keep * var.data[i]
else:
global_mask *= mask
global_data += keep * var.data[i]
return Variable(name=var.name,
unit=var.unit,
data=np.ma.masked_array(global_data, mask=global_mask),
lat=lat,
lon=lon)
def stageData(self, m):
obs = Variable(filename=self.source,
variable_name=self.variable,
alternate_vars=self.alternate_vars,
convert_calendar=False)
if obs.time is None: raise il.NotTemporalVariable()
self.pruneRegions(obs)
# Try to extract a commensurate quantity from the model
mod = m.extractTimeSeries(self.variable,
alt_vars=self.alternate_vars,
expression=self.derived,
convert_calendar=False,
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
# When we make things comparable, sites can get pruned, we
# also need to prune the site labels
lat = np.copy(obs.lat)
lon = np.copy(obs.lon)
obs, mod = il.MakeComparable(obs,
mod,
clip_ref=False,
prune_sites=True,
allow_diff_times=True)
# Some datasets / models return data in UTC, others are local
# time. Try to correct by looking at the time of maximum
# incident radiation.
try:
inc = Variable(filename=self.source,
variable_name="LW_IN",
convert_calendar=False)
obs.tmax = getTimeOfDailyMaximum(inc)
except:
obs.tmax = 12.
try:
inc = m.extractTimeSeries("FSDS",
convert_calendar=False,
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
mod.tmax = getTimeOfDailyMaximum(inc)
except:
mod.tmax = 12.
return obs, mod
def modelPlots(self, m):
# some of the plots can be generated using the standard
# routine, with some modifications
super(ConfRunoff, self).modelPlots(m)
#
bname = os.path.join(self.output_path, "%s_Benchmark.nc" % (self.name))
fname = os.path.join(self.output_path,
"%s_%s.nc" % (self.name, m.name))
# get the HTML page
page = [
page for page in self.layout.pages if "MeanState" in page.name
][0]
if not os.path.isfile(bname): return
if not os.path.isfile(fname): return
obs = Variable(filename=bname,
variable_name="runoff",
groupname="MeanState")
mod = Variable(filename=fname,
variable_name="runoff",
groupname="MeanState")
for i, basin in enumerate(self.basins):
page.addFigure("Spatially integrated regional mean",
basin,
"MNAME_global_%s.png" % basin,
basin,
False,
longname=basin)
fig, ax = plt.subplots(figsize=(6.8, 2.8), tight_layout=True)
ax.plot(obs.time / 365 + 1850,
obs.data[:, i],
lw=2,
color='k',
alpha=0.5)
ax.plot(mod.time / 365 + 1850, mod.data[:, i], lw=2, color=m.color)
ax.grid()
ax.set_ylabel(post.UnitStringToMatplotlib(obs.unit))
fig.savefig(
os.path.join(self.output_path,
"%s_global_%s.png" % (m.name, basin)))
plt.close()
def ReadBenchmark(filname, variable_name, alternate_vars="", study_limits=[]):
obs = Variable(filename = filname,
variable_name = variable_name,
alternate_vars = alternate_vars,
t0 = None if len(study_limits) != 2 else study_limits[0],
tf = None if len(study_limits) != 2 else study_limits[1])
if obs.time is None: raise il.NotTemporalVariable()
return obs
def _profileScore(ref, com, region):
db = np.unique(
np.hstack(
[np.unique(ref.depth_bnds),
np.unique(com.depth_bnds)]))
d = 0.5 * (db[:-1] + db[1:])
w = np.diff(db)
r = ref.data[np.argmin(np.abs(d[:, np.newaxis] - ref.depth),
axis=1)]
c = com.data[np.argmin(np.abs(d[:, np.newaxis] - com.depth),
axis=1)]
err = np.sqrt((((r - c)**2) * w).sum() /
((r**2) * w).sum()) # relative L2 error
return Variable(name="Profile Score %s" % region,
unit="1",
data=np.exp(-err))
def _albedo(dn, up, vname, energy_threshold):
mask = (dn.data < energy_threshold)
dn.data = np.ma.masked_array(dn.data, mask=mask)
up.data = np.ma.masked_array(up.data, mask=mask)
np.seterr(over='ignore', under='ignore')
al = np.ma.masked_array(up.data / dn.data, mask=mask)
np.seterr(over='warn', under='warn')
al = Variable(name=vname,
unit="1",
data=al,
lat=dn.lat,
lat_bnds=dn.lat_bnds,
lon=dn.lon,
lon_bnds=dn.lon_bnds,
time=dn.time,
time_bnds=dn.time_bnds)
return dn, up, al
def stageData(self, m):
obs = Variable(filename=self.source,
variable_name=self.variable,
alternate_vars=self.alternate_vars)
if obs.time is None: raise il.NotTemporalVariable()
self.pruneRegions(obs)
# Try to extract a commensurate quantity from the model
mod = m.extractTimeSeries(
self.variable,
alt_vars=self.alternate_vars,
expression=self.derived,
initial_time=obs.time_bnds[0, 0],
final_time=obs.time_bnds[-1, 1],
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon).convert(obs.unit)
return obs, mod
def _evapfrac(sh, le, vname, energy_threshold):
mask = ((le.data < 0) + (sh.data < 0) +
((le.data + sh.data) < energy_threshold))
sh.data = np.ma.masked_array(sh.data, mask=mask)
le.data = np.ma.masked_array(le.data, mask=mask)
np.seterr(over='ignore', under='ignore')
ef = np.ma.masked_array(le.data / (le.data + sh.data), mask=mask)
np.seterr(over='warn', under='warn')
ef = Variable(name=vname,
unit="1",
data=ef,
lat=sh.lat,
lat_bnds=sh.lat_bnds,
lon=sh.lon,
lon_bnds=sh.lon_bnds,
time=sh.time,
time_bnds=sh.time_bnds)
return sh, le, ef
def __init__(self, **keywords):
# Calls the regular constructor
super(ConfPEcAn, self).__init__(**keywords)
obs = Variable(filename=self.source,
variable_name=self.variable,
alternate_vars=self.alternate_vars,
convert_calendar=False)
self.years = np.asarray(
[t.year for t in cftime.num2date(obs.time, "days since 1850-1-1")],
dtype=int)
self.years = np.unique(self.years)
# Setup a html layout for generating web views of the results
pages = []
# Mean State page
pages.append(post.HtmlPage("MeanState", "Mean State"))
pages[-1].setHeader("CNAME / RNAME / MNAME")
pages[-1].setSections([
"Seasonal Diurnal Cycle",
] + ["%d" % y for y in self.years])
pages.append(post.HtmlAllModelsPage("AllModels", "All Models"))
pages[-1].setHeader("CNAME / RNAME")
pages[-1].setSections([])
pages[-1].setRegions(self.regions)
pages.append(post.HtmlPage("DataInformation", "Data Information"))
pages[-1].setSections([])
pages[-1].text = "\n"
with Dataset(self.source) as dset:
for attr in dset.ncattrs():
a = dset.getncattr(attr)
if 'astype' in dir(a): a = a.astype('str')
if 'encode' in dir(a): a = a.encode('ascii', 'ignore')
pages[-1].text += "<p><b> %s: </b>%s</p>\n" % (
attr, a)
self.layout = post.HtmlLayout(pages, self.longname)
def modelPlots(self, m):
bname = "%s/%s_Benchmark.nc" % (self.output_path, self.name)
fname = "%s/%s_%s.nc" % (self.output_path, self.name, m.name)
if not os.path.isfile(bname): return
if not os.path.isfile(fname): return
# get the HTML page
page = [
page for page in self.layout.pages if "MeanState" in page.name
][0]
page.priority = ["Beginning", "Ending", "Strength", "Score", "Overall"]
for y in self.years:
# ---------------------------------------------------------------- #
plt.figure(figsize=(5, 5), tight_layout=True)
has_data = False
for name, color, alpha in zip([bname, fname], ['k', m.color],
[0.6, 1.0]):
try:
v = Variable(filename=name,
variable_name="mag%d" % y,
groupname="MeanState")
has_data = True
except:
continue
plt.polar(v.time / 365. * 2 * np.pi,
v.data,
'-',
color=color,
alpha=alpha,
lw=2)
if has_data:
plt.xticks(bnd_months[:-1] / 365. * 2 * np.pi, lbl_months)
plt.ylim(0, self.limits["mag"])
plt.savefig("%s/%s_mag%d.png" % (self.output_path, m.name, y))
page.addFigure("%d" % y,
"mag%d" % y,
"MNAME_mag%d.png" % y,
side="DIURNAL MAGNITUDE",
legend=False)
plt.close()
# ---------------------------------------------------------------- #
fig, ax = plt.subplots(figsize=(8, 5), tight_layout=True)
has_data = False
unit = ""
for name, color, alpha, lbl in zip([bname, fname], ['k', m.color],
[0.6, 1.0],
['Benchmark', m.name]):
try:
v = Variable(filename=name,
variable_name="cycle%d" % y,
groupname="MeanState")
has_data = True
unit = v.unit
except:
continue
v.plot(ax, color=color, alpha=alpha, lw=2, label=lbl)
if has_data:
ax.set_xticks(np.linspace(0, 1, 9) / 365 + 1850)
ax.set_xticklabels(
["%2d:00" % t for t in np.linspace(0, 24, 9)])
ax.set_ylim(self.limits['cycle']['min'],
self.limits['cycle']['max'])
ax.grid(True)
ax.set_ylabel(post.UnitStringToMatplotlib(unit))
ax.set_xlabel("local time")
ax.legend(bbox_to_anchor=(0, 1.005, 1, 0.25),
loc='lower left',
mode='expand',
ncol=2,
borderaxespad=0,
frameon=False)
plt.savefig("%s/%s_cycle%d.png" %
(self.output_path, m.name, y))
page.addFigure("%d" % y,
"cycle%d" % y,
"MNAME_cycle%d.png" % y,
side="SEASONAL DIURNAL CYCLE",
legend=False)
plt.close()
def confront(self, m):
# get the HTML page
page = [
page for page in self.layout.pages if "MeanState" in page.name
][0]
# Grab the data
obs, mod = self.stageData(m)
odata, ot, otb = DiurnalReshape(obs)
mdata, mt, mtb = DiurnalReshape(mod)
n = len(self.lbls)
obs_amp = np.zeros(n)
mod_amp = np.zeros(n)
amp_score = np.zeros(n)
obs_phase = np.zeros(n)
mod_phase = np.zeros(n)
phase_score = np.zeros(n)
for site in range(n):
# Site name
lbl = self.lbls[site]
skip = False
# Observational diurnal cycle
tobs = ot + obs.lon[site] / 360
vobs = odata[..., site]
vobs = np.roll(vobs, -tobs.searchsorted(0), axis=1)
tobs = np.roll(tobs, -tobs.searchsorted(0))
tobs += (tobs < 0)
aobs = (vobs.max(axis=1) - vobs.min(axis=1)).mean()
vobs = vobs.mean(axis=0)
if vobs.size == vobs.mask.sum(): skip = True
if not skip:
acyc = CubicSpline(np.hstack([tobs, tobs[0] + 1.]),
np.hstack([vobs, vobs[0]]),
bc_type="periodic")
troot = acyc.derivative().solve()
troot = troot[(troot >= 0) * (troot <= 1.)]
otmx = troot[acyc(troot).argmax()]
# Model diurnal cycle
tmod = mt + mod.lon[site] / 360
vmod = mdata[..., site]
vmod = np.roll(vmod, -tmod.searchsorted(0), axis=1)
tmod = np.roll(tmod, -tmod.searchsorted(0))
tmod += (tmod < 0)
amod = (vmod.max(axis=1) - vmod.min(axis=1)).mean()
vmod = vmod.mean(axis=0)
mcyc = CubicSpline(np.hstack([tmod, tmod[0] + 1.]),
np.hstack([vmod, vmod[0]]),
bc_type="periodic")
troot = mcyc.derivative().solve()
troot = troot[(troot >= 0) * (troot <= 1.)]
mtmx = troot[mcyc(troot).argmax()]
# Scalars and scores
if skip:
obs_amp[site] = np.nan
obs_phase[site] = np.nan
amp_score[site] = np.nan
phase_score[site] = np.nan
else:
obs_amp[site] = aobs
obs_phase[site] = otmx
amp_score[site] = np.exp(-np.abs(amod - aobs) / aobs)
phase_score[site] = 1 - np.abs(mtmx - otmx) / 0.5
mod_amp[site] = amod
mod_phase[site] = mtmx
# Plot
ts = np.linspace(0, 1, 100)
fig, ax = plt.subplots(figsize=(6.8, 2.8), tight_layout=True)
if not skip:
ax.plot(tobs, vobs, 'o', mew=0, markersize=3, color='k')
ax.plot(ts, acyc(ts), '-', color='k')
ax.plot(otmx, acyc(otmx), 'o', mew=0, markersize=5, color='k')
ax.plot(tmod, vmod, 'o', mew=0, markersize=3, color=m.color)
ax.plot(ts, mcyc(ts), '-', color=m.color)
ax.plot(mtmx, mcyc(mtmx), 'o', mew=0, markersize=5, color=m.color)
xt = np.arange(25)[::3]
xtl = ["%02d:00" % xx for xx in xt]
ax.set_xticks(xt / 24.)
ax.set_xticklabels(xtl)
ax.grid(True)
ax.set_xlabel("Mean solar time")
ax.set_ylabel("[%s]" % obs.unit)
plt.savefig(
os.path.join(self.output_path,
"%s_diurnal_%s.png" % (m.name, lbl)))
plt.close()
obs_amp = np.ma.masked_invalid(obs_amp)
obs_phase = np.ma.masked_invalid(obs_phase)
amp_score = np.ma.masked_invalid(amp_score)
phase_score = np.ma.masked_invalid(phase_score)
results = Dataset(os.path.join(self.output_path,
"%s_%s.nc" % (self.name, m.name)),
mode="w")
results.setncatts({"name": m.name, "color": m.color})
Variable(name="Amplitude global",
unit=obs.unit,
data=mod_amp.mean()).toNetCDF4(results, group="MeanState")
Variable(name="Max time global",
unit="h",
data=24 * mod_phase.mean()).toNetCDF4(results,
group="MeanState")
Variable(name="Amplitude Score global",
unit="1",
data=amp_score.mean()).toNetCDF4(results,
group="MeanState")
Variable(name="Phase Score global",
unit="1",
data=phase_score.mean()).toNetCDF4(results,
group="MeanState")
results.close()
if self.master:
results = Dataset(os.path.join(self.output_path,
"%s_Benchmark.nc" % self.name),
mode="w")
results.setncatts({
"name": "Benchmark",
"color": np.asarray([0.5, 0.5, 0.5])
})
Variable(name="Amplitude global",
unit=obs.unit,
data=obs_amp.mean()).toNetCDF4(results,
group="MeanState")
Variable(name="Max time global",
unit="h",
data=24 * obs_phase.mean()).toNetCDF4(
results, group="MeanState")
results.close()
def compositePlots(self):
if not self.master: return
# get the HTML page
page = [
page for page in self.layout.pages if "MeanState" in page.name
][0]
# composite profile plot
f1 = {}
a1 = {}
u1 = None
for fname in glob.glob("%s/*.nc" % self.output_path):
with Dataset(fname) as dset:
if "MeanState" not in dset.groups: continue
group = dset.groups["MeanState"]
variables = getVariableList(group)
for region in self.regions:
vname = "profile_of_%s_over_%s" % (self.variable, region)
if vname in variables:
if not f1.has_key(region):
f1[region], a1[region] = plt.subplots(
figsize=(5, 5), tight_layout=True)
var = Variable(filename=fname,
variable_name=vname,
groupname="MeanState")
u1 = var.unit
page.addFigure("Mean regional depth profiles",
"profile",
"RNAME_profile.png",
side="REGIONAL MEAN PROFILE",
legend=False)
a1[region].plot(var.data,
var.depth,
'-',
color=dset.getncattr("color"))
for key in f1.keys():
a1[key].set_xlabel("%s [%s]" % (self.variable, u1))
a1[key].set_ylabel("depth [m]")
a1[key].invert_yaxis()
f1[key].savefig("%s/%s_profile.png" % (self.output_path, key))
plt.close()
# spatial distribution Taylor plot
models = []
colors = []
corr = {}
std = {}
has_std = False
for fname in glob.glob("%s/*.nc" % self.output_path):
with Dataset(fname) as dset:
models.append(dset.getncattr("name"))
colors.append(dset.getncattr("color"))
if "MeanState" not in dset.groups: continue
dset = dset.groups["MeanState"]
for region in self.regions:
if not std.has_key(region): std[region] = []
if not corr.has_key(region): corr[region] = []
key = []
if "scalars" in dset.groups:
key = [
v for v in dset.groups["scalars"].variables.keys()
if ("Spatial Distribution Score" in v
and region in v)
]
if len(key) > 0:
has_std = True
sds = dset.groups["scalars"].variables[key[0]]
corr[region].append(sds.getncattr("R"))
std[region].append(sds.getncattr("std"))
if has_std:
# Legends
def _alphabeticalBenchmarkFirst(key):
key = key[0].upper()
if key == "BENCHMARK": return 0
return key
tmp = sorted(zip(models, colors), key=_alphabeticalBenchmarkFirst)
fig, ax = plt.subplots()
for model, color in tmp:
ax.plot(0, 0, 'o', mew=0, ms=8, color=color, label=model)
handles, labels = ax.get_legend_handles_labels()
plt.close()
ncol = np.ceil(float(len(models)) / 11.).astype(int)
fig, ax = plt.subplots(figsize=(3. * ncol, 2.8), tight_layout=True)
ax.legend(handles,
labels,
loc="upper right",
ncol=ncol,
fontsize=10,
numpoints=1)
ax.axis('off')
fig.savefig("%s/legend_spatial_variance.png" % self.output_path)
plt.close()
page.addFigure("Period mean at surface",
"spatial_variance",
"RNAME_spatial_variance.png",
side="SPATIAL TAYLOR DIAGRAM",
legend=False)
page.addFigure("Period mean at surface",
"legend_spatial_variance",
"legend_spatial_variance.png",
side="MODEL COLORS",
legend=False)
if "Benchmark" in models: colors.pop(models.index("Benchmark"))
for region in self.regions:
if not (std.has_key(region) and corr.has_key(region)): continue
if len(std[region]) != len(corr[region]): continue
if len(std[region]) == 0: continue
fig = plt.figure(figsize=(6.0, 6.0))
post.TaylorDiagram(np.asarray(std[region]),
np.asarray(corr[region]), 1.0, fig, colors)
fig.savefig("%s/%s_spatial_variance.png" %
(self.output_path, region))
plt.close()
def modelPlots(self, m):
def _fheight(region):
if region in ["arctic", "southern"]: return 6.8
return 2.8
bname = "%s/%s_Benchmark.nc" % (self.output_path, self.name)
fname = "%s/%s_%s.nc" % (self.output_path, self.name, m.name)
if not os.path.isfile(bname): return
if not os.path.isfile(fname): return
# get the HTML page
page = [
page for page in self.layout.pages if "MeanState" in page.name
][0]
with Dataset(fname) as dataset:
group = dataset.groups["MeanState"]
variables = getVariableList(group)
color = dataset.getncattr("color")
vname = "timeint_surface_%s" % self.variable
if vname in variables:
var = Variable(filename=fname,
variable_name=vname,
groupname="MeanState")
page.addFigure("Period mean at surface",
"timeint",
"MNAME_RNAME_timeint.png",
side="MODEL SURFACE MEAN",
legend=True)
for region in self.regions:
fig = plt.figure()
ax = fig.add_axes([0.06, 0.025, 0.88, 0.965])
var.plot(ax,
region=region,
vmin=self.limits["timeint"]["min"],
vmax=self.limits["timeint"]["max"],
cmap=self.cmap,
land=0.750,
water=0.875)
fig.savefig("%s/%s_%s_timeint.png" %
(self.output_path, m.name, region))
plt.close()
vname = "bias_surface_%s" % self.variable
if vname in variables:
var = Variable(filename=fname,
variable_name=vname,
groupname="MeanState")
page.addFigure("Period mean at surface",
"bias",
"MNAME_RNAME_bias.png",
side="SURFACE MEAN BIAS",
legend=True)
for region in self.regions:
fig = plt.figure()
ax = fig.add_axes([0.06, 0.025, 0.88, 0.965])
var.plot(ax,
region=region,
vmin=self.limits["bias"]["min"],
vmax=self.limits["bias"]["max"],
cmap="seismic",
land=0.750,
water=0.875)
fig.savefig("%s/%s_%s_bias.png" %
(self.output_path, m.name, region))
plt.close()
vname = "biasscore_surface_%s" % self.variable
if vname in variables:
var = Variable(filename=fname,
variable_name=vname,
groupname="MeanState")
page.addFigure("Period mean at surface",
"biasscore",
"MNAME_RNAME_biasscore.png",
side="SURFACE MEAN BIAS SCORE",
legend=True)
for region in self.regions:
fig = plt.figure()
ax = fig.add_axes([0.06, 0.025, 0.88, 0.965])
var.plot(ax,
region=region,
vmin=0,
vmax=1,
cmap="RdYlGn",
land=0.750,
water=0.875)
fig.savefig("%s/%s_%s_biasscore.png" %
(self.output_path, m.name, region))
plt.close()
vname = "rmse_surface_%s" % self.variable
if vname in variables:
var = Variable(filename=fname,
variable_name=vname,
groupname="MeanState")
page.addFigure("Period mean at surface",
"rmse",
"MNAME_RNAME_rmse.png",
side="SURFACE MEAN RMSE",
legend=True)
for region in self.regions:
fig = plt.figure()
ax = fig.add_axes([0.06, 0.025, 0.88, 0.965])
var.plot(ax,
region=region,
vmin=self.limits["rmse"]["min"],
vmax=self.limits["rmse"]["max"],
cmap="YlOrRd",
land=0.750,
water=0.875)
fig.savefig("%s/%s_%s_rmse.png" %
(self.output_path, m.name, region))
plt.close()
vname = "rmsescore_surface_%s" % self.variable
if vname in variables:
var = Variable(filename=fname,
variable_name=vname,
groupname="MeanState")
page.addFigure("Period mean at surface",
"rmsescore",
"MNAME_RNAME_rmsescore.png",
side="SURFACE MEAN RMSE SCORE",
legend=True)
for region in self.regions:
fig = plt.figure()
ax = fig.add_axes([0.06, 0.025, 0.88, 0.965])
var.plot(ax,
region=region,
vmin=0,
vmax=1,
cmap="RdYlGn",
land=0.750,
water=0.875)
fig.savefig("%s/%s_%s_rmsescore.png" %
(self.output_path, m.name, region))
plt.close()
for region in self.regions:
vname = "timelonint_of_%s_over_%s" % (self.variable, region)
if vname in variables:
var = Variable(filename=fname,
variable_name=vname,
groupname="MeanState")
if region == "global":
page.addFigure(
"Mean regional depth profiles",
"timelonint",
"MNAME_RNAME_timelonint.png",
side="MODEL DEPTH PROFILE",
legend=True,
longname="Time/longitude averaged profile")
fig, ax = plt.subplots(figsize=(6.8, 2.8),
tight_layout=True)
l = np.hstack([var.lat_bnds[:, 0], var.lat_bnds[-1, 1]])
d = np.hstack(
[var.depth_bnds[:, 0], var.depth_bnds[-1, 1]])
ind = np.all(var.data.mask, axis=0)
ind = np.ma.masked_array(range(ind.size),
mask=ind,
dtype=int)
b = ind.min()
e = ind.max() + 1
ax.pcolormesh(
l[b:(e + 1)],
d,
var.data[:, b:e],
vmin=self.limits["timelonint"]["global"]["min"],
vmax=self.limits["timelonint"]["global"]["max"],
cmap=self.cmap)
ax.set_xlabel("latitude")
ax.set_ylim((d.max(), d.min()))
ax.set_ylabel("depth [m]")
fig.savefig("%s/%s_%s_timelonint.png" %
(self.output_path, m.name, region))
plt.close()
if not self.master: return
with Dataset(bname) as dataset:
group = dataset.groups["MeanState"]
variables = getVariableList(group)
color = dataset.getncattr("color")
vname = "timeint_surface_%s" % self.variable
if vname in variables:
var = Variable(filename=bname,
variable_name=vname,
groupname="MeanState")
page.addFigure("Period mean at surface",
"benchmark_timeint",
"Benchmark_RNAME_timeint.png",
side="BENCHMARK SURFACE MEAN",
legend=True)
for region in self.regions:
fig = plt.figure()
ax = fig.add_axes([0.06, 0.025, 0.88, 0.965])
var.plot(ax,
region=region,
vmin=self.limits["timeint"]["min"],
vmax=self.limits["timeint"]["max"],
cmap=self.cmap,
land=0.750,
water=0.875)
fig.savefig("%s/Benchmark_%s_timeint.png" %
(self.output_path, region))
plt.close()
for region in self.regions:
vname = "timelonint_of_%s_over_%s" % (self.variable, region)
if vname in variables:
var = Variable(filename=bname,
variable_name=vname,
groupname="MeanState")
if region == "global":
page.addFigure(
"Mean regional depth profiles",
"benchmark_timelonint",
"Benchmark_RNAME_timelonint.png",
side="BENCHMARK DEPTH PROFILE",
legend=True,
longname="Time/longitude averaged profile")
fig, ax = plt.subplots(figsize=(6.8, 2.8),
tight_layout=True)
l = np.hstack([var.lat_bnds[:, 0], var.lat_bnds[-1, 1]])
d = np.hstack(
[var.depth_bnds[:, 0], var.depth_bnds[-1, 1]])
ind = np.all(var.data.mask, axis=0)
ind = np.ma.masked_array(range(ind.size),
mask=ind,
dtype=int)
b = ind.min()
e = ind.max() + 1
ax.pcolormesh(
l[b:(e + 1)],
d,
var.data[:, b:e],
vmin=self.limits["timelonint"]["global"]["min"],
vmax=self.limits["timelonint"]["global"]["max"],
cmap=self.cmap)
ax.set_xlabel("latitude")
ax.set_ylim((d.max(), d.min()))
ax.set_ylabel("depth [m]")
fig.savefig("%s/Benchmark_%s_timelonint.png" %
(self.output_path, region))
plt.close()
def modelPlots(self, m):
# Check that the required intermediate files are present
bname = "%s/%s_Benchmark.nc" % (self.output_path, self.name)
fname = "%s/%s_%s.nc" % (self.output_path, self.name, m.name)
if not os.path.isfile(bname): return
if not os.path.isfile(fname): return
# Get the HTML page
page = [
page for page in self.layout.pages if "MeanState" in page.name
][0]
# Read variables from the datafiles
obs = Variable(filename=bname,
variable_name="co2",
groupname="MeanState")
mod = Variable(filename=fname,
variable_name="co2",
groupname="MeanState")
ocyc = Variable(filename=bname,
variable_name="cycle",
groupname="MeanState")
mcyc = Variable(filename=fname,
variable_name="cycle",
groupname="MeanState")
oiav = Variable(filename=bname,
variable_name="iav",
groupname="MeanState")
miav = Variable(filename=fname,
variable_name="iav",
groupname="MeanState")
ocycf = Variable(filename=bname,
variable_name="cycle_fine",
groupname="MeanState")
mcycf = Variable(filename=fname,
variable_name="cycle_fine",
groupname="MeanState")
omaxp = Variable(filename=bname,
variable_name="maxp",
groupname="MeanState")
ominp = Variable(filename=bname,
variable_name="minp",
groupname="MeanState")
oamp = Variable(filename=bname,
variable_name="amp",
groupname="MeanState")
mmaxp = Variable(filename=fname,
variable_name="maxp",
groupname="MeanState")
mminp = Variable(filename=fname,
variable_name="minp",
groupname="MeanState")
mamp = Variable(filename=fname,
variable_name="amp",
groupname="MeanState")
t = np.linspace(0, 365, 366)
# Create an index for ordering sites by descending latitude
sord = np.argsort(obs.lat)[::-1]
inds = np.asarray(range(len(self.lbls)), dtype=int)[sord]
lbls = np.asarray(self.lbls)[sord]
# Create sparkline plots of each site
fig_height = 1.
width_per_year = 5. / 28
fig_dpi = 300.
lw = 1.
bndmonths = np.asarray(bnd_months, dtype=float) / 365.
for site_id, site in zip(inds, lbls):
# Initialize site info
band = self.lat_bands.searchsorted(obs.lat[site_id])
section = "Latitude Band %d to %d [ppm]" % (
self.lat_bands[band - 1], self.lat_bands[band])
vmin = min(obs.data[:, site_id].min(), mod.data[:, site_id].min())
vmax = max(obs.data[:, site_id].max(), mod.data[:, site_id].max())
tick = max(int(np.floor(min(vmax, abs(vmin)))), 1)
yticks = [-tick, 0, tick]
# How many years of data do we have?
t0, tf = mod.time_bnds[(np.where(
(mod.data[:, site_id] *
mod.time).mask == False)[0])[[0, -1]]] / 365. + 1850
t0 = np.floor(t0[0])
tf = np.ceil(tf[-1])
xticks = [
i for i in range(int(t0),
int(tf) + 1) if str(i)[-1] == "0"
]
# Plot setup
fig_width0 = (5.) * width_per_year
fig_width1 = (tf - t0) * width_per_year
fig_width2 = (tf - t0) * width_per_year
fig_width3 = (10.) * width_per_year
fig, ax = plt.subplots(
ncols=4,
figsize=(fig_width0 + fig_width1 + fig_width2 + fig_width3,
fig_height),
gridspec_kw={
'width_ratios':
[fig_width0, fig_width3, fig_width1, fig_width2]
},
tight_layout=True,
dpi=fig_dpi)
# Text only plot with the name and location of the site
ax[0].text(0.5,
0.5,
"%s\n%d,%d" %
(site, obs.lat[site_id], obs.lon[site_id]),
horizontalalignment='center',
verticalalignment='center',
transform=ax[0].transAxes)
ax[0].set_xticks([])
ax[0].set_yticks([])
ax[0].axis('off')
# Plot the finely interpolated annual cycle, shade JFM and JJA
ax[1].fill_between(bndmonths[[0, 3]], [vmin, vmin], [vmax, vmax],
color='k',
alpha=0.05,
lw=0)
ax[1].fill_between(bndmonths[[6, 9]], [vmin, vmin], [vmax, vmax],
color='k',
alpha=0.05,
lw=0)
ax[1].plot(ocyc.time / 365,
ocyc.data[:, site_id],
lw=1.5 * lw,
color='k',
alpha=0.35)
ax[1].plot(mcyc.time / 365,
mcyc.data[:, site_id],
lw=lw,
color=m.color)
ax[1].set_ylim(vmin, vmax)
ax[1].spines['top'].set_visible(False)
ax[1].spines['right'].set_visible(False)
ax[1].spines['bottom'].set_position('zero')
ax[1].set_xticks([])
ax[1].set_yticks(yticks)
ax[1].set_xticklabels([])
ax[1].set_ylabel('cycle')
# Plot the variability in co2, shade every other decade
shade = [
t0,
] + xticks + [
tf,
]
alf = 0.15
bot = vmin + 0.02 * (vmax - vmin)
for i in range(1, len(shade) - 1):
if i % 2 == 0:
ax[2].text(shade[i],
bot,
shade[i],
color='k',
alpha=alf,
size=12)
ax[3].text(shade[i],
bot,
shade[i],
color='k',
alpha=alf,
size=12)
else:
ax[2].fill_between(shade[i:(i + 2)], [vmin, vmin],
[vmax, vmax],
color='k',
alpha=0.05,
lw=0)
ax[2].text(shade[i],
bot,
shade[i],
color='k',
alpha=alf,
size=12)
ax[3].fill_between(shade[i:(i + 2)], [vmin, vmin],
[vmax, vmax],
color='k',
alpha=0.05,
lw=0)
ax[3].text(shade[i],
bot,
shade[i],
color='k',
alpha=alf,
size=12)
ax[2].plot(obs.time / 365 + 1850,
obs.data[:, site_id],
lw=1.5 * lw,
color='k',
alpha=0.35)
ax[2].plot(mod.time / 365 + 1850,
mod.data[:, site_id],
lw=lw,
color=m.color)
ax[2].set_ylim(vmin, vmax)
ax[2].spines['top'].set_visible(False)
ax[2].spines['right'].set_visible(False)
ax[2].spines['bottom'].set_position('zero')
ax[2].set_yticks(yticks)
ax[2].set_xticklabels([])
ax[2].set_xticks([])
ax[2].set_ylabel('var')
# Plot the interannual variability in co2, shade every other decade
ax[3].plot(oiav.time / 365 + 1850,
oiav.data[:, site_id],
lw=1.5 * lw,
color='k',
alpha=0.35)
ax[3].plot(miav.time / 365 + 1850,
miav.data[:, site_id],
lw=lw,
color=m.color)
ax[3].set_ylim(vmin, vmax)
ax[3].spines['top'].set_visible(False)
ax[3].spines['right'].set_visible(False)
ax[3].spines['bottom'].set_position('zero')
ax[3].set_xticks([])
ax[3].set_yticks(yticks)
ax[3].tick_params(axis='x', direction='inout', length=10)
ax[3].set_ylabel('iav')
# Save the figure
fig.savefig(
os.path.join(self.output_path,
"%s_global_%s.png" % (m.name, site)))
page.addFigure(section,
site,
"MNAME_global_%s.png" % site,
side="",
legend=False,
width=fig.get_size_inches()[0] * fig.dpi * 0.25,
br=True,
longname="Site %s" % site)
plt.close()
# Compute mean amplitude, max and min phase over latitude bands
lat_bnds = self.lat_bands
lat = 0.5 * (lat_bnds[:-1] + lat_bnds[1:])
nb = lat_bnds.size - 1
o_band_min = np.zeros(nb)
o_band_max = np.zeros(nb)
o_band_amp = np.zeros(nb)
o_band_iav = np.zeros(nb)
m_band_min = np.zeros(nb)
m_band_max = np.zeros(nb)
m_band_amp = np.zeros(nb)
m_band_iav = np.zeros(nb)
with np.errstate(under='ignore'):
for i in range(o_band_min.size):
ind = np.where(
(obs.lat > lat_bnds[i]) * (obs.lat <= lat_bnds[i + 1]))[0]
o_band_min[i] = _meanDay(ominp.data[ind])
o_band_max[i] = _meanDay(omaxp.data[ind])
o_band_amp[i] = oamp.data[ind].mean()
o_band_iav[i] = oiav.data.std(axis=0)[ind].mean()
m_band_min[i] = _meanDay(mminp.data[ind])
m_band_max[i] = _meanDay(mmaxp.data[ind])
m_band_amp[i] = mamp.data[ind].mean()
m_band_iav[i] = miav.data.std(axis=0)[ind].mean()
# To plot the mean values over latitude bands superimposed on
# the globe, we have to transform the phase and amplitude
# values to [-180,180], as if they were longitudes.
o_band_min = o_band_min / 365. * 360 - 180
o_band_max = o_band_max / 365. * 360 - 180
m_band_min = m_band_min / 365. * 360 - 180
m_band_max = m_band_max / 365. * 360 - 180
max_amp = o_band_amp.max()
min_amp = o_band_amp.min()
amp_ticks = np.linspace(min_amp, max_amp, 6)
amp_ticklabels = ["%.2f" % t for t in amp_ticks]
damp = 0.1 * (max_amp - min_amp)
max_amp += damp
min_amp -= damp
o_band_amp = (o_band_amp - min_amp) / (max_amp - min_amp) * 360 - 180
m_band_amp = (m_band_amp - min_amp) / (max_amp - min_amp) * 360 - 180
amp_ticks = (amp_ticks - min_amp) / (max_amp - min_amp) * 360 - 180
max_iav = max(o_band_iav.max(), m_band_iav.max())
min_iav = 0.
iav_ticks = np.linspace(min_iav, max_iav, 6)
iav_ticklabels = ["%.2f" % t for t in iav_ticks]
diav = 0.1 * (max_iav - min_iav)
max_iav += diav
min_iav -= diav
o_band_iav = (o_band_iav - min_iav) / (max_iav - min_iav) * 360. - 180.
m_band_iav = (m_band_iav - min_iav) / (max_iav - min_iav) * 360. - 180.
iav_ticks = (iav_ticks - min_iav) / (max_iav - min_iav) * 360. - 180.
# Plot mean latitude band amplitude where amplitude is on the longitude axis
fig, ax = plt.subplots(figsize=(8, 4.5), tight_layout=True)
bmap = Basemap(projection='cyl',
llcrnrlon=-180,
llcrnrlat=-90,
urcrnrlon=+180,
urcrnrlat=+90,
ax=ax,
resolution='c')
bmap.drawlsmask(land_color="0.875", ocean_color="1.000", lakes=True)
ms = 8
bmap.scatter(obs.lon,
obs.lat,
8,
color="0.60",
latlon=True,
label="Sites",
ax=ax)
ax.plot(o_band_amp,
lat,
'--o',
color=np.asarray([0.5, 0.5, 0.5]),
label="%s amplitude" % self.name,
mew=0,
markersize=ms)
ax.plot(m_band_amp,
lat,
'-o',
color=m.color,
label="%s amplitude" % m.name,
mew=0,
markersize=ms)
ax.yaxis.grid(color="0.875", linestyle="-")
ax.legend(bbox_to_anchor=(0, 1.005, 1, 0.25),
loc='lower left',
mode='expand',
ncol=5,
borderaxespad=0,
frameon=False)
ax.set_xlim(-180, 180)
ax.set_ylim(-90, 90)
ax.set_xlabel(obs.unit)
ax.set_xticks(amp_ticks)
ax.set_xticklabels(amp_ticklabels)
ax.set_yticks(lat_bnds)
fig.savefig(os.path.join(self.output_path, "%s_amp.png" % m.name))
page.addFigure("Summary",
"amp",
"MNAME_amp.png",
side="AMPLITUDE",
width=fig.get_size_inches()[0] * fig.dpi * 0.75,
legend=False)
# Plot mean latitude band iav where iav is on the longitude axis
fig, ax = plt.subplots(figsize=(8, 4.5), tight_layout=True)
bmap = Basemap(projection='cyl',
llcrnrlon=-180,
llcrnrlat=-90,
urcrnrlon=+180,
urcrnrlat=+90,
ax=ax,
resolution='c')
bmap.drawlsmask(land_color="0.875", ocean_color="1.000", lakes=True)
ms = 8
bmap.scatter(obs.lon,
obs.lat,
8,
color="0.60",
latlon=True,
label="Sites",
ax=ax)
ax.plot(o_band_iav,
lat,
'--o',
color=np.asarray([0.5, 0.5, 0.5]),
label="%s variability" % self.name,
mew=0,
markersize=ms)
ax.plot(m_band_iav,
lat,
'-o',
color=m.color,
label="%s variability" % m.name,
mew=0,
markersize=ms)
ax.yaxis.grid(color="0.875", linestyle="-")
ax.legend(bbox_to_anchor=(0, 1.005, 1, 0.25),
loc='lower left',
mode='expand',
ncol=5,
borderaxespad=0,
frameon=False)
ax.set_xlim(-180, 180)
ax.set_ylim(-90, 90)
ax.set_xlabel(obs.unit)
ax.set_xticks(iav_ticks)
ax.set_xticklabels(iav_ticklabels)
ax.set_yticks(lat_bnds)
fig.savefig(os.path.join(self.output_path, "%s_iav.png" % m.name))
page.addFigure("Summary",
"iav",
"MNAME_iav.png",
side="INTERANNUAL VARIABILITY",
width=fig.get_size_inches()[0] * fig.dpi * 0.75,
legend=False)
# Plot mean latitude band max phase where the phase is on the longitude axis
fig, ax = plt.subplots(figsize=(8, 4.5), tight_layout=True)
bmap = Basemap(projection='cyl',
llcrnrlon=-180,
llcrnrlat=-90,
urcrnrlon=+180,
urcrnrlat=+90,
ax=ax,
resolution='c')
bmap.drawlsmask(land_color="0.875", ocean_color="1.000", lakes=True)
bmap.scatter(obs.lon,
obs.lat,
8,
color="0.60",
latlon=True,
label="Sites",
ax=ax)
ax.plot(o_band_max,
lat,
'--o',
color=np.asarray([0.5, 0.5, 0.5]),
label="%s maximum" % self.name,
mew=0,
markersize=ms)
ax.plot(m_band_max,
lat,
'-o',
color=m.color,
label="%s maximum" % m.name,
mew=0,
markersize=ms)
ax.yaxis.grid(color="0.875", linestyle="-")
ax.legend(bbox_to_anchor=(0, 1.005, 1, 0.25),
loc='lower left',
mode='expand',
ncol=3,
borderaxespad=0,
frameon=False)
ax.set_xlim(-180, 180)
ax.set_ylim(-90, 90)
ax.set_xticks(mid_months / 365. * 360. - 180)
ax.set_xticklabels(lbl_months)
ax.set_yticks(lat_bnds)
fig.savefig(os.path.join(self.output_path, "%s_maxphase.png" % m.name))
page.addFigure("Summary",
"maxphase",
"MNAME_maxphase.png",
side="TIMING OF MAXIMUM",
width=fig.get_size_inches()[0] * fig.dpi * 0.75,
legend=False)
# Plot mean latitude band min phase where the phase is on the longitude axis
fig, ax = plt.subplots(figsize=(8, 4.5), tight_layout=True)
bmap = Basemap(projection='cyl',
llcrnrlon=-180,
llcrnrlat=-90,
urcrnrlon=+180,
urcrnrlat=+90,
ax=ax,
resolution='c')
bmap.drawlsmask(land_color="0.875", ocean_color="1.000", lakes=True)
bmap.scatter(obs.lon,
obs.lat,
8,
color="0.60",
latlon=True,
label="Sites",
ax=ax)
ax.plot(o_band_min,
lat,
'--o',
color=np.asarray([0.5, 0.5, 0.5]),
label="%s minimum" % self.name,
mew=0,
markersize=ms)
ax.plot(m_band_min,
lat,
'-o',
color=m.color,
label="%s minimum" % m.name,
mew=0,
markersize=ms)
ax.yaxis.grid(color="0.875", linestyle="-")
ax.legend(bbox_to_anchor=(0, 1.005, 1, 0.25),
loc='lower left',
mode='expand',
ncol=3,
borderaxespad=0,
frameon=False)
ax.set_xlim(-180, 180)
ax.set_ylim(-90, 90)
ax.set_xticks(mid_months / 365. * 360. - 180)
ax.set_xticklabels(lbl_months)
ax.set_yticks(lat_bnds)
fig.savefig(os.path.join(self.output_path, "%s_minphase.png" % m.name))
page.addFigure("Summary",
"minphase",
"MNAME_minphase.png",
side="TIMING OF MINIMUM",
width=fig.get_size_inches()[0] * fig.dpi * 0.75,
legend=False)
def getDiurnalDataForGivenYear(var, year):
"""
"""
# Get this year's data, make sure there is enough
spd = int(round(1 / np.diff(var.time_bnds, axis=1).mean()))
datum = cftime.date2num(cftime.datetime(year, 1, 1), "days since 1850-1-1")
ind = np.where(year == var.year)[0]
t = var.time[ind] - datum
tb = var.time_bnds[ind] - datum
data = var.data[ind, 0]
# Reshape the data
begin = np.argmin(tb[:(spd - 1), 0] % 1)
end = begin + int(t[begin:].size / float(spd) - 1) * spd
shift = int(round((var.tmax - 12) / (var.dt * 24)))
begin += shift
end += shift
shp = (-1, spd) + data.shape[1:]
data = data[begin:end].reshape(shp)
t = t[begin:end].reshape(shp).mean(axis=1)
# Diurnal magnitude
mag = Variable(name="mag%d" % year,
unit=var.unit,
time=t,
data=data.max(axis=1) - data.min(axis=1))
# Some of the tower data is 'intelligently' masked which leads to
# too much of the data being removed to use my change-detection
# algorithm to determine season begin/end.
mag.skip = False
if mag.data.mask.all(): raise NotEnoughDataInYear # if year is all masked
dmag = (mag.data.max() - mag.data.min())
if dmag < 1e-14:
raise NotEnoughDataInYear # if diurnal mag has no amplitude
# Some mask out off seasons, season is taken to be all the data
begin_day, end_day = mag.time[mag.data.mask == False][[
0, -1
]] # begin/end of the mask data
if ((begin_day < 2 and end_day < 363)
or (begin_day > 2 and end_day > 363)):
# this is likely a dataset which is a partial year
raise NotEnoughDataInYear
elif (begin_day > 2 and end_day < 363):
# this is likely a dataset that masks out off-seasons
season = np.asarray([begin_day, end_day])
else:
season = findSeasonalTiming(mag.time, mag.data)
centroid = findSeasonalCentroid(mag.time, mag.data)
mag.season = season
mag.centroid = centroid
# Mask out off season
mask = (t < season[0]) + (t > season[1])
data = np.ma.masked_array(data,
mask=mask[:, np.newaxis] *
np.ones(data.shape[1], dtype=bool))
# Mean seasonal diurnal cycle
uncert = np.zeros((data.shape[1], 2))
for i in range(data.shape[1]):
d = data[:, i].compressed()
if d.size == 0: continue
uncert[i, :] = np.percentile(d, [10, 90])
day = np.linspace(0, 1, spd + 1)
day = 0.5 * (day[:-1] + day[1:])
with np.errstate(under='ignore', over='ignore'):
cycle = Variable(name="cycle%d" % year,
unit=var.unit,
time=day,
data=data.mean(axis=0),
data_bnds=uncert)
# Mean seasonal uptake
uptake = Variable(unit=var.unit,
time=var.time[ind] - datum,
time_bnds=var.time_bnds[ind] - datum,
data=var.data[ind, 0])
uptake.data = np.ma.masked_array(uptake.data,
mask=((uptake.time < season[0]) +
(uptake.time > season[1])))
uptake = uptake.integrateInTime(mean=True)
cycle.uptake = uptake.data
# Timing of peak seasonal cycle, could be a maximum or minimum,
# check second derivative of a best-fit parabola to the daytime
# data.
begin = int(spd / 4)
end = int(spd * 3 / 4)
p = np.polyfit(cycle.time[begin:end], cycle.data[begin:end], 2)
if p[0] < 0:
cycle.peak = day[cycle.data.argmax()] * 24
else:
cycle.peak = day[cycle.data.argmin()] * 24
return mag, cycle
def stageData(self, m):
# Get the observational data
obs = Variable(filename=self.source,
variable_name=self.variable,
alternate_vars=self.alternate_vars)
# Reduce the sites
if self.map:
obs.lat = obs.lat[self.map]
obs.lon = obs.lon[self.map]
obs.depth = obs.depth[self.map]
obs.data = obs.data[:, self.map]
obs.ndata = len(self.map)
# Get the model result
force_emulation = self.keywords.get("force_emulation",
"False").lower() == "true"
never_emulation = self.keywords.get("never_emulation",
"False").lower() == "true"
no_co2 = False
mod = None
if not force_emulation:
try:
#print "Trying to get co2 from %s" % m.name
mod = m.extractTimeSeries(
self.variable,
alt_vars=self.alternate_vars,
initial_time=obs.time_bnds[0, 0],
final_time=obs.time_bnds[-1, 1],
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
except il.VarNotInModel:
#print "co2 not in %s" % m.name
no_co2 = True
if (((mod is None) or no_co2) and (not never_emulation)):
#print "Emulating co2 in %s" % m.name
mod = self.emulatedModelResult(m, obs)
if mod is None: raise il.VarNotInModel()
# get the right layering, closest to the layer elevation where all aren't masked.
if mod.layered:
ind = (np.abs(obs.depth[:, np.newaxis] - mod.depth)).argmin(axis=1)
for i in range(ind.size):
while (mod.data[:, ind[i], i].mask.sum() >
0.5 * mod.data.shape[0]):
ind[i] += 1
data = []
for i in range(ind.size):
data.append(mod.data[:, ind[i], i])
mod.data = np.ma.masked_array(data).T
mod.depth = None
mod.depth_bnds = None
mod.layered = False
obs, mod = il.MakeComparable(obs,
mod,
mask_ref=True,
clip_ref=True)
mod.data.mask += obs.data.mask
# Remove the trend via quadradic polynomial
obs = _detrend(obs)
mod = _detrend(mod)
return obs, mod
def confront(self, m):
# Grab the data
obs, mod = self.stageData(m)
# Compute amplitude, min and max phase, and annual cycle as numpy data arrays
ocyc, ot, otb = _cycleShape(obs)
mcyc, mt, mtb = _cycleShape(mod)
n = len(self.lbls)
obs_amp = np.zeros(n)
obs_maxp = np.zeros(n)
obs_minp = np.zeros(n)
mod_amp = np.zeros(n)
mod_maxp = np.zeros(n)
mod_minp = np.zeros(n)
obs_cyc = np.zeros((366, n))
mod_cyc = np.zeros((366, n))
well_define = np.zeros(n)
for i, site in enumerate(self.lbls):
obs_amp[i], obs_maxp[i], obs_minp[
i], obs_cyc[:, i] = _siteCharacteristics(ot, ocyc[..., i])
mod_amp[i], mod_maxp[i], mod_minp[
i], mod_cyc[:, i] = _siteCharacteristics(mt, mcyc[..., i])
well_define[i] = _phaseWellDefined(obs.time, obs.data[:, i])
well_define /= well_define.sum()
# Write out ILAMB variables for observed quantities
with np.errstate(under='ignore'):
ocyc = Variable(
name="cycle", # mean annual cycle
unit=obs.unit,
data=ocyc.mean(axis=0),
ndata=obs.ndata,
lat=obs.lat,
lon=obs.lon,
time=ot,
time_bnds=otb)
oiav = Variable(
name="iav", # deseasonalized interannual variability
unit=obs.unit,
data=obs.data -
ocyc.data[ocyc.time.searchsorted(obs.time % 365), ...],
time=obs.time,
ndata=obs.ndata,
lat=obs.lat,
lon=obs.lon,
time_bnds=obs.time_bnds)
ocycf = Variable(
name=
"cycle_fine", # finely sampled cycle from cubic interpolation
unit=obs.unit,
data=obs_cyc,
time=np.linspace(0, 365, 366),
ndata=obs.ndata,
lat=obs.lat,
lon=obs.lon)
obs_amp = Variable(
name="amp", # mean amplitude over time period
unit=obs.unit,
data=obs_amp,
ndata=obs.ndata,
lat=obs.lat,
lon=obs.lon)
obs_maxp = Variable(
name="maxp", # Julian day of the maximum of the annual cycle
unit="d",
data=obs_maxp,
ndata=obs.ndata,
lat=obs.lat,
lon=obs.lon)
obs_minp = Variable(
name="minp", # Julian day of the minimum of the annual cycle
unit="d",
data=obs_minp,
ndata=obs.ndata,
lat=obs.lat,
lon=obs.lon)
# Write out ILAMB variables for modeled quantities
mcyc = Variable(
name="cycle", # mean annual cycle
unit=mod.unit,
data=mcyc.mean(axis=0),
ndata=mod.ndata,
lat=mod.lat,
lon=mod.lon,
time=mt,
time_bnds=mtb)
miav = Variable(
name="iav", # deseasonalized interannual variability
unit=mod.unit,
data=mod.data -
mcyc.data[mcyc.time.searchsorted(mod.time % 365), ...],
time=mod.time,
ndata=mod.ndata,
lat=mod.lat,
lon=mod.lon,
time_bnds=mod.time_bnds)
mcycf = Variable(
name=
"cycle_fine", # finely sampled cycle from cubic interpolation
unit=mod.unit,
data=mod_cyc,
time=np.linspace(0, 365, 366),
ndata=mod.ndata,
lat=mod.lat,
lon=mod.lon)
mod_amp = Variable(
name="amp", # mean amplitude over time period
unit=mod.unit,
data=mod_amp,
ndata=mod.ndata,
lat=mod.lat,
lon=mod.lon)
mod_maxp = Variable(
name="maxp", # Julian day of the maximum of the annual cycle
unit="d",
data=mod_maxp,
ndata=mod.ndata,
lat=mod.lat,
lon=mod.lon)
mod_minp = Variable(
name="minp", # Julian day of the minimum of the annual cycle
unit="d",
data=mod_minp,
ndata=mod.ndata,
lat=mod.lat,
lon=mod.lon)
# Amplitude score: for each site we compute the relative error
# in amplitude and then score each site using the
# exponential. The score for the model is then the arithmetic
# mean across sites.
Samp = Variable(name="Amplitude Score global",
unit="1",
data=np.exp(-np.abs(mod_amp.data - obs_amp.data) /
obs_amp.data).mean())
# Interannual variability score: similar to the amplitude
# score, we also score the relative error in the stdev(iav)
# and report a mean across sites.
ostd = oiav.data.std(axis=0)
mstd = miav.data.std(axis=0)
Siav = Variable(name="Interannual Variability Score global",
unit="1",
data=np.exp(-np.abs(mstd - ostd) / ostd).mean())
# Min/Max Phase score: for each site we compute the phase
# shift and normalize it linearly where a 0 day shift gets a
# score of 1 and a 365/2 day shift is zero. We then compute a
# weighted mean across sites where sites without a well
# defined annual cycle are discarded.
Smax = Variable(name="Max Phase Score global",
unit="1",
data=np.average(_computeShift(obs_maxp, mod_maxp),
weights=well_define))
Smin = Variable(name="Min Phase Score global",
unit="1",
data=np.average(_computeShift(obs_minp, mod_minp),
weights=well_define))
# Write out the intermediate variables
with Dataset(os.path.join(self.output_path,
"%s_%s.nc" % (self.name, m.name)),
mode="w") as results:
results.setncatts({"name": m.name, "color": m.color})
for v in [
mod, mcyc, miav, mcycf, mod_maxp, mod_minp, mod_amp, Samp,
Siav, Smax, Smin
]:
v.toNetCDF4(results, group="MeanState")
if not self.master: return
with Dataset(os.path.join(self.output_path,
"%s_Benchmark.nc" % self.name),
mode="w") as results:
results.setncatts({
"name": "Benchmark",
"color": np.asarray([0.5, 0.5, 0.5])
})
for v in [obs, ocyc, oiav, ocycf, obs_maxp, obs_minp, obs_amp]:
v.toNetCDF4(results, group="MeanState")
def emulatedModelResult(self, m, obs):
# Emulation parameters
emulated_flux = self.keywords.get("emulated_flux", "nbp")
spinup = 12
Ninf = 60
ilev = 1
# Get the model result
mod = m.extractTimeSeries(emulated_flux,
initial_time=obs.time_bnds[0, 0] -
float(Ninf) / 12 * 365 + 29.,
final_time=obs.time_bnds[-1, 1])
# What if I don't have Ninf leadtime?
tf = min(obs.time_bnds[-1, 1], mod.time_bnds[-1, 1])
obs.trim(t=[-1e20, tf])
mod.trim(t=[-1e20, tf])
# Integrate the emulated flux over each pulse region
region_int = {}
for region in self.pulse_regions:
region_int[region] = mod.integrateInSpace(
region=region).convert("Pg yr-1")
# Load the operator from the files
lat, lon, H = None, None, None
for i in range(12):
# FIX: move pulses into one file to avoid requiring a naming convention
with Dataset(os.path.join(self.pulse_dir,
"Pulse%02d.nc" % (i + 1))) as dset:
if lat is None: lat = dset.variables["lat"][...]
if lon is None: lon = dset.variables["lon"][...]
if H is None:
H = np.zeros((22, 12, Ninf + 12, lat.size, lon.size))
for j in range(22):
T = dset.variables['T%d' % (j + 1)]
H[j, i,
...] = T[spinup:, ilev, ...] - T[:spinup, ...].mean()
# Where are our sites?
ilat = np.abs(lat[:, np.newaxis] - obs.lat).argmin(axis=0)
ilon = np.abs(lon[:, np.newaxis] - obs.lon).argmin(axis=0)
# Apply the operator
Nyrs = mod.time.size / 12
Ntot = 12 * Nyrs + Ninf
eflux = np.zeros((obs.ndata, 22, Ntot))
for j in range(20):
for s in range(obs.ndata):
Htemp = H[j, ..., ilat[s], ilon[s]]
Htrac = np.zeros((22, Ntot, 12 * Nyrs))
for i in range(Nyrs):
pb = 12 * i
pe = 12 * (i + 1)
re = pe + Ninf
Htrac[j, pb:re, pb:pe] = Htemp.T
Htrac[j, re:, pb:pe] = np.tile(Htemp[:, -1],
[12 * (Nyrs - i - 1), 1])
eflux[s, j, :] = np.dot(
Htrac[j, ...], region_int["pulse_region_%d" %
(j + 1)].data) * (-1e-3
) # H is [] ?
eflux = eflux.sum(axis=1).T
eflux = eflux[Ninf:-Ninf]
eflux = np.ma.masked_array(eflux, mask=obs.data.mask)
mod = Variable(name="co2",
unit=obs.unit,
lat=obs.lat,
lon=obs.lon,
ndata=obs.ndata,
time=obs.time,
time_bnds=obs.time_bnds,
data=eflux)
return mod
def confront(self, m):
# Grab the data
obs, mod = self.stageData(m)
# What years does the analysis run over?
obs.year = np.asarray(
[t.year for t in cftime.num2date(obs.time, "days since 1850-1-1")],
dtype=int)
mod.year = np.asarray(
[t.year for t in cftime.num2date(mod.time, "days since 1850-1-1")],
dtype=int)
# Analysis
mod_file = os.path.join(self.output_path,
"%s_%s.nc" % (self.name, m.name))
obs_file = os.path.join(self.output_path,
"%s_Benchmark.nc" % (self.name, ))
with il.FileContextManager(self.master, mod_file, obs_file) as fcm:
# Encode some names and colors
fcm.mod_dset.setncatts({
"name": m.name,
"color": m.color,
"lat": mod.lat[0],
"lon": mod.lon[0],
"complete": 0
})
if self.master:
fcm.obs_dset.setncatts({
"name": "Benchmark",
"color": np.asarray([0.5, 0.5, 0.5]),
"complete": 0
})
Osbegin = []
Osend = []
Oslen = []
Opeak = []
Ouptake = []
Msbegin = []
Msend = []
Mslen = []
Mpeak = []
Muptake = []
Ssbegin = []
Ssend = []
Scentroid = []
Speak = []
Suptake = []
obs_years = 0
mod_years = 0
for y in self.years:
# First try to get the obs for this year, might not
# have enough info in which case we skip the year.
try:
obs_mag, obs_cycle = getDiurnalDataForGivenYear(obs, y)
except NotEnoughDataInYear:
continue
# Output what we must even if the model doesn't have
# data here.
obs_years += 1
Osbegin.append(obs_mag.season[0])
Osend.append(obs_mag.season[1])
Oslen.append(obs_mag.season[1] - obs_mag.season[0])
Opeak.append(obs_cycle.peak)
Ouptake.append(obs_cycle.uptake)
if self.master:
obs_mag.toNetCDF4(fcm.obs_dset,
group="MeanState",
attributes={
"sbegin": obs_mag.season[0],
"send": obs_mag.season[1]
})
obs_cycle.toNetCDF4(fcm.obs_dset,
group="MeanState",
attributes={
"uptake": obs_cycle.uptake,
"peak": obs_cycle.peak
})
# Try to get enough data from the model to operate
try:
mod_mag, mod_cycle = getDiurnalDataForGivenYear(mod, y)
except NotEnoughDataInYear:
continue
mod_years += 1
Msbegin.append(mod_mag.season[0])
Msend.append(mod_mag.season[1])
Mslen.append(mod_mag.season[1] - mod_mag.season[0])
Mpeak.append(mod_cycle.peak)
Muptake.append(mod_cycle.uptake)
mod_mag.toNetCDF4(fcm.mod_dset,
group="MeanState",
attributes={
"sbegin": mod_mag.season[0],
"send": mod_mag.season[1]
})
mod_cycle.toNetCDF4(fcm.mod_dset,
group="MeanState",
attributes={
"uptake": mod_cycle.uptake,
"peak": mod_cycle.peak
})
# Get scores for this year
ssbegin, ssend, scentroid, speak, suptake = DiurnalScalars(
obs_mag, mod_mag, obs_cycle, mod_cycle)
Ssbegin.append(ssbegin)
Ssend.append(ssend)
Scentroid.append(scentroid)
Speak.append(speak)
Suptake.append(suptake)
# Output mean scores/scalars
if self.master and obs_years > 0:
Ouptake = np.ma.masked_invalid(Ouptake)
Variable(name="Number of Years global",
unit="1",
data=obs_years).toNetCDF4(fcm.obs_dset,
group="MeanState")
Variable(name="Computed UTC Shift global",
unit="h",
data=obs.tmax - 12).toNetCDF4(fcm.obs_dset,
group="MeanState")
Variable(name="Season Beginning global",
unit="d",
data=np.asarray(Osbegin).mean()).toNetCDF4(
fcm.obs_dset, group="MeanState")
Variable(name="Season Ending global",
unit="d",
data=np.asarray(Osend).mean()).toNetCDF4(
fcm.obs_dset, group="MeanState")
Variable(name="Season Length global",
unit="d",
data=np.asarray(Oslen).mean()).toNetCDF4(
fcm.obs_dset, group="MeanState")
Variable(name="Diurnal Peak Timing global",
unit="h",
data=np.asarray(Opeak).mean()).toNetCDF4(
fcm.obs_dset, group="MeanState")
Variable(name="Mean Season Uptake global",
unit=obs.unit,
data=Ouptake.mean()).toNetCDF4(fcm.obs_dset,
group="MeanState")
if mod_years > 0:
Muptake = np.ma.masked_invalid(Muptake)
Suptake = np.ma.masked_invalid(Suptake)
Variable(name="Number of Years global",
unit="1",
data=mod_years).toNetCDF4(fcm.mod_dset,
group="MeanState")
Variable(name="Computed UTC Shift global",
unit="h",
data=mod.tmax - 12).toNetCDF4(fcm.mod_dset,
group="MeanState")
Variable(name="Season Beginning global",
unit="d",
data=np.asarray(Msbegin).mean()).toNetCDF4(
fcm.mod_dset, group="MeanState")
Variable(name="Season Ending global",
unit="d",
data=np.asarray(Msend).mean()).toNetCDF4(
fcm.mod_dset, group="MeanState")
Variable(name="Season Length global",
unit="d",
data=np.asarray(Mslen).mean()).toNetCDF4(
fcm.mod_dset, group="MeanState")
Variable(name="Diurnal Peak Timing global",
unit="h",
data=np.asarray(Mpeak).mean()).toNetCDF4(
fcm.mod_dset, group="MeanState")
Variable(name="Mean Season Uptake global",
unit=mod.unit,
data=Muptake.mean()).toNetCDF4(fcm.mod_dset,
group="MeanState")
Variable(name="Season Beginning Score global",
unit="1",
data=np.asarray(Ssbegin).mean()).toNetCDF4(
fcm.mod_dset, group="MeanState")
Variable(name="Season Ending Score global",
unit="1",
data=np.asarray(Ssend).mean()).toNetCDF4(
fcm.mod_dset, group="MeanState")
Variable(name="Season Strength Score global",
unit="1",
data=np.asarray(Scentroid).mean()).toNetCDF4(
fcm.mod_dset, group="MeanState")
Variable(name="Diurnal Peak Timing Score global",
unit="1",
data=np.asarray(Speak).mean()).toNetCDF4(
fcm.mod_dset, group="MeanState")
Variable(name="Diurnal Uptake Score global",
unit="1",
data=Suptake.mean()).toNetCDF4(fcm.mod_dset,
group="MeanState")
# Flag complete
fcm.mod_dset.complete = 1
if self.master: fcm.obs_dset.complete = 1
def test_bias(variables):
head = "\n--- Testing bias() "
print "%s%s\n" % (head, "-" * (120 - len(head)))
for vdict in variables:
var = vdict["var"]
try:
vdict["bias"] = var.bias(var)
print vdict["bias"]
except il.NotSpatialVariable:
pass
# Setup different types of variables
gpp = {}
gpp["var"] = Variable(filename=os.environ["ILAMB_ROOT"] +
"/DATA/gpp/FLUXNET-MTE/derived/gpp.nc",
variable_name="gpp")
le = {}
le["var"] = Variable(filename=os.environ["ILAMB_ROOT"] +
"/DATA/le/FLUXNET/derived/le.nc",
variable_name="le")
co2 = {}
co2["var"] = Variable(filename=os.environ["ILAMB_ROOT"] +
"/DATA/co2/MAUNA.LOA/derived/co2_1959-2013.nc",
variable_name="co2")
pi = {}
pi["var"] = Variable(data=np.pi, unit="-", name="pi")
variables = [gpp, le, co2, pi]
head = "\n--- Found the following variables for testing "
def stageData(self, m):
energy_threshold = float(self.keywords.get("energy_threshold", 20.))
# Handle obs data
sh_obs = Variable(filename=os.path.join(os.environ["ILAMB_ROOT"],
"DATA/sh/GBAF/sh_0.5x0.5.nc"),
variable_name="sh")
le_obs = Variable(filename=os.path.join(os.environ["ILAMB_ROOT"],
"DATA/le/GBAF/le_0.5x0.5.nc"),
variable_name="le")
sh_obs, le_obs, obs = _evapfrac(sh_obs, le_obs, self.variable,
energy_threshold)
# Prune out uncovered regions
if obs.time is None: raise il.NotTemporalVariable()
self.pruneRegions(obs)
# Handle model data
sh_mod = m.extractTimeSeries("hfss",
initial_time=obs.time_bnds[0, 0],
final_time=obs.time_bnds[-1, 1],
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
le_mod = m.extractTimeSeries("hfls",
initial_time=obs.time_bnds[0, 0],
final_time=obs.time_bnds[-1, 1],
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
sh_mod, le_mod, mod = _evapfrac(sh_mod, le_mod, self.variable,
energy_threshold)
# Make variables comparable
obs, mod = il.MakeComparable(obs,
mod,
mask_ref=True,
clip_ref=True,
logstring="[%s][%s]" %
(self.longname, m.name))
sh_obs, sh_mod = il.MakeComparable(sh_obs,
sh_mod,
mask_ref=True,
clip_ref=True,
logstring="[%s][%s]" %
(self.longname, m.name))
le_obs, le_mod = il.MakeComparable(le_obs,
le_mod,
mask_ref=True,
clip_ref=True,
logstring="[%s][%s]" %
(self.longname, m.name))
# Compute the mean ef
sh_obs = sh_obs.integrateInTime(mean=True)
le_obs = le_obs.integrateInTime(mean=True)
np.seterr(over='ignore', under='ignore')
obs_timeint = np.ma.masked_array(
le_obs.data / (le_obs.data + sh_obs.data),
mask=(sh_obs.data.mask + le_obs.data.mask))
np.seterr(over='warn', under='warn')
obs_timeint = Variable(name=self.variable,
unit="1",
data=obs_timeint,
lat=sh_obs.lat,
lat_bnds=sh_obs.lat_bnds,
lon=sh_obs.lon,
lon_bnds=sh_obs.lon_bnds)
sh_mod = sh_mod.integrateInTime(mean=True)
le_mod = le_mod.integrateInTime(mean=True)
np.seterr(over='ignore', under='ignore')
mod_timeint = np.ma.masked_array(
le_mod.data / (le_mod.data + sh_mod.data),
mask=(sh_mod.data.mask + le_mod.data.mask))
np.seterr(over='warn', under='warn')
mod_timeint = Variable(name=self.variable,
unit="1",
data=mod_timeint,
lat=sh_mod.lat,
lat_bnds=sh_mod.lat_bnds,
lon=sh_mod.lon,
lon_bnds=sh_mod.lon_bnds)
return obs, mod, obs_timeint, mod_timeint
def stageData(self, m):
energy_threshold = float(self.keywords.get("energy_threshold", 10))
# Handle obs data
dn_obs = Variable(filename=self.source.replace("albedo", "rsds"),
variable_name="rsds")
up_obs = Variable(filename=self.source.replace("albedo", "rsus"),
variable_name="rsus")
dn_obs, up_obs, obs = _albedo(dn_obs, up_obs, self.variable,
energy_threshold)
# Prune out uncovered regions
if obs.time is None: raise il.NotTemporalVariable()
self.pruneRegions(obs)
# Handle model data
dn_mod = m.extractTimeSeries("rsds",
initial_time=obs.time_bnds[0, 0],
final_time=obs.time_bnds[-1, 1],
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
up_mod = m.extractTimeSeries("rsus",
initial_time=obs.time_bnds[0, 0],
final_time=obs.time_bnds[-1, 1],
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
dn_mod, up_mod, mod = _albedo(dn_mod, up_mod, self.variable,
energy_threshold)
# Make variables comparable
obs, mod = il.MakeComparable(obs,
mod,
mask_ref=True,
clip_ref=True,
logstring="[%s][%s]" %
(self.longname, m.name))
dn_obs, dn_mod = il.MakeComparable(dn_obs,
dn_mod,
mask_ref=True,
clip_ref=True,
logstring="[%s][%s]" %
(self.longname, m.name))
up_obs, up_mod = il.MakeComparable(up_obs,
up_mod,
mask_ref=True,
clip_ref=True,
logstring="[%s][%s]" %
(self.longname, m.name))
# Compute the mean albedo
dn_obs = dn_obs.integrateInTime(mean=True)
up_obs = up_obs.integrateInTime(mean=True)
np.seterr(over='ignore', under='ignore')
obs_timeint = np.ma.masked_array(up_obs.data / dn_obs.data,
mask=(dn_obs.data.mask +
up_obs.data.mask))
np.seterr(over='warn', under='warn')
obs_timeint = Variable(name=self.variable,
unit="1",
data=obs_timeint,
lat=dn_obs.lat,
lat_bnds=dn_obs.lat_bnds,
lon=dn_obs.lon,
lon_bnds=dn_obs.lon_bnds)
dn_mod = dn_mod.integrateInTime(mean=True)
up_mod = up_mod.integrateInTime(mean=True)
np.seterr(over='ignore', under='ignore')
mod_timeint = np.ma.masked_array(up_mod.data / dn_mod.data,
mask=(dn_mod.data.mask +
up_mod.data.mask))
np.seterr(over='warn', under='warn')
mod_timeint = Variable(name=self.variable,
unit="1",
data=mod_timeint,
lat=dn_mod.lat,
lat_bnds=dn_mod.lat_bnds,
lon=dn_mod.lon,
lon_bnds=dn_mod.lon_bnds)
return obs, mod, obs_timeint, mod_timeint