def test_get_analysis_code_reuse_command_success(requests_mock):
# Arrange
analysis_id = 'analysis_id'
sub_analysis_id = 'sub_analysis_id'
_setup_access_token(requests_mock)
requests_mock.get(
f'{full_url}/analyses/{analysis_id}/sub-analyses/{sub_analysis_id}/code-reuse',
json={
'families': [{
'family_id': '123',
'family_name': 'Name',
'reused_gene_count': 123
}],
'unique_gene_count':
0
})
args = dict(analysis_id=analysis_id, sub_analysis_id=sub_analysis_id)
# Act
command_results = get_analysis_code_reuse_command(intezer_api, args)
# Assert
outputs = command_results.outputs[
'Intezer.Analysis(obj.RootAnalysis == val.ID).SubAnalyses(obj.ID == val.ID)']
assert outputs['ID'] == sub_analysis_id
assert outputs['RootAnalysis'] == analysis_id
assert len(outputs['CodeReuseFamilies']) == 1
assert 'CodeReuse' in outputs
def test_get_analysis_code_reuse_command_no_code_reuse(requests_mock):
# Arrange
analysis_id = 'analysis_id'
sub_analysis_id = 'sub_analysis_id'
_setup_access_token(requests_mock)
requests_mock.get(
f'{full_url}/analyses/{analysis_id}/sub-analyses/{sub_analysis_id}/code-reuse',
status_code=HTTPStatus.CONFLICT)
args = dict(analysis_id=analysis_id, sub_analysis_id=sub_analysis_id)
# Act
command_results = get_analysis_code_reuse_command(intezer_api, args)
# Assert
assert command_results.readable_output == 'No code reuse for this analysis'
def test_get_analysis_code_reuse_command_analysis_doesnt_exist(requests_mock):
# Arrange
analysis_id = 'analysis_id'
sub_analysis_id = 'sub_analysis_id'
_setup_access_token(requests_mock)
requests_mock.get(
f'{full_url}/analyses/{analysis_id}/sub-analyses/{sub_analysis_id}/code-reuse',
status_code=HTTPStatus.NOT_FOUND)
args = dict(analysis_id=analysis_id, sub_analysis_id=sub_analysis_id)
# Act
command_results = get_analysis_code_reuse_command(intezer_api, args)
# Assert
assert command_results.readable_output == f'The Analysis {analysis_id} was not found on Intezer Analyze'