def getConfigFileFromInput() :
"""DO NOT PARSE INPUT PARAMETERS IN THIS APPLICATION
This is interfere with other applications which really need to use input pars,
for example maskeditor...
"""
return None
msg = 'Input pars sys.argv: '
for par in sys.argv : msg += par
logger.debug(msg, self.name)
#print msg
if len(sys.argv) > 2 :
usage()
msg = 'Too many arguments ...\n'
msg += 'EXIT application ...\n'
sys.exit (msg)
elif len(sys.argv) == 1 :
return None
else :
path = sys.argv[1]
if os.path.exists(path) :
return path
else :
usage()
msg = 'Requested configuration file "' + path + '" does not exist.\n'
msg += 'EXIT application ...\n'
sys.exit (msg)
def printStyleInfo(widg):
qstyle = widg.style()
qpalette = qstyle.standardPalette()
qcolor_bkg = qpalette.color(1)
#r,g,b,alp = qcolor_bkg.getRgb()
msg = 'Background color: r,g,b,alpha = %d,%d,%d,%d' % ( qcolor_bkg.getRgb() )
logger.debug(msg)
def parse_xtc_path(path='.') :
logger.debug( 'parse_xtc_path(...): ' + path, __name__)
instrument = 'INS'
experiment = 'expt'
run_str = 'r0000'
run_num = 0
bname = os.path.basename(path) # i.e. e167-r0015-s00-c00.xtc
try:
run_str = bname.split('-')[1] # i.e. r0015
run_num = int(run_str[1:]) # i.e. 15
except :
print 'Unexpected xtc file name:', bname
print 'Use default instrument, experiment, run_str, run_num: ', instrument, experiment, run_str, run_num
return instrument, experiment, run_str, run_num
pass
dirname = os.path.dirname(path) # i.e /reg/data/ana12/xcs/xcsi0112/xtc
fields = dirname.split('/')
n_fields = len(fields)
if n_fields < 4 :
msg1 = 'Unexpected xtc dirname: %s: Number of fields in dirname = %d' % (dirname, n_fields)
msg2 = 'Use default instrument, experiment, run_str, run_num: %s %s %s %d' % (instrument, experiment, run_str, run_num)
logger.warning( msg1+msg2, __name__)
return instrument, experiment, run_str, run_num
xtc_subdir = fields[-1] # i.e. xtc
experiment = fields[-2] # i.e. xcsi0112
instrument = fields[-3].upper() # i.e. XCS
msg = 'Set instrument, experiment, run_str, run_num: %s %s %s %d' % (instrument, experiment, run_str, run_num)
logger.debug( msg, __name__)
return instrument, experiment, run_str, run_num
def print_substitution_dict (self) :
msg = '\nSubstitution dictionary for %s' % self.path_in
for k,v in self.d_subs.iteritems() :
msg += '\n%s : %s' % (k.ljust(16), v.ljust(32))
logger.debug(msg)
logger.debug(msg,__name__)
if self.do_test_print : print msg
def on_but_plot(self):
self.exportLocalPars()
logger.debug('on_but_plot', __name__)
try :
cp.plotimgspe.close()
try : del cp.plotimgspe
except : pass
except :
self.arr = None
self.img_arr = None
msg = 'Plot image for %s' % self.det_name.value()
logger.info(msg, __name__)
list_of_fnames = cp.blsp.get_list_of_files_for_all_sources(fnm.path_peds_ave()) \
+ cp.blsp.get_list_of_files_for_all_sources(fnm.path_peds_rms())
#print 'list_of_fnames = ', list_of_fnames
if list_of_fnames != [] :
fname = list_of_fnames[0]
if len(list_of_fnames) > 1 :
fname = gu.selectFromListInPopupMenu(list_of_fnames)
msg = 'Selected file to plot: %s' % fname
logger.info(msg, __name__)
self.arr = gu.get_array_from_file( fname )
#print self.arr.shape,'\n', self.arr.shape
if self.det_name.value() == cp.list_of_dets[0] : # CSAPD, shape = (5920,388)
self.arr.shape = (32*185,388)
self.img_arr = cspadimg.get_cspad_raw_data_array_image(self.arr)
elif self.det_name.value() == cp.list_of_dets[1] : # CSAPD2x2
self.arr.shape = (185,388,2)
self.img_arr = cspad2x2img.get_cspad2x2_non_corrected_image_for_raw_data_array(self.arr)
elif self.det_name.value() == cp.list_of_dets[2] : # Camera
pass
elif self.det_name.value() == cp.list_of_dets[3] : # Princeton
self.img_arr = self.arr
elif self.det_name.value() == cp.list_of_dets[4] : # pnCCD
pass
if self.img_arr == None :
msg = 'self.img_arr == None'
return
#print arr.shape,'\n', arr.shape
cp.plotimgspe = PlotImgSpe(None, self.img_arr, ofname=fnm.path_peds_aver_plot())
#cp.plotimgspe = PlotImgSpe(None, self.img_arr, ifname=fnm.path_peds_ave(), ofname=fnm.path_peds_aver_plot())
#cp.plotimgspe.setParent(self)
cp.plotimgspe.move(cp.guimain.pos().__add__(QtCore.QPoint(720,120)))
cp.plotimgspe.show()
def onButDeploy(self):
logger.debug('onButDeploy', __name__)
if self.script == 'Select' :
msg = 'Script for processing metrology file is not selected.... Select it first and evaluate constants (Item 4)'
logger.warning(msg, __name__)
return
if self.source_name == 'Select' :
msg = 'Detector is not selected. Select it first...'
logger.warning(msg, __name__)
return
list_of_cmds = self.list_of_copy_cmds()
txt = '\nList of commands for tentetive file deployment:'
for cmd in list_of_cmds :
txt += '\n' + cmd
logger.info(txt, __name__)
msg = 'Approve commands \njust printed in the logger'
if self.approveCommand(self.butDeploy, msg) :
for cmd in list_of_cmds :
fd.procDeployCommand(cmd, 'metrology-alignment')
#print 'Command for deployer: ', cmd
if cp.guistatus is not None : cp.guistatus.updateStatusInfo()
def closeEvent(self, event):
logger.debug('closeEvent', __name__)
try: # try to delete self object in the cp
del cp.guilistoftau # GUIListOfTau
except AttributeError:
pass # silently ignore
def on_but_load(self):
logger.debug('on_but_load', __name__ )
if self.fexmod :
if self.afe_rd.is_new_arr_available() :
logger.info('WAIT for image loading', __name__ )
arr = self.afe_rd.get_arr_latest()
self.widgimage.set_image_array_new(arr,
rot_ang_n90 = self.widgimage.rot_ang_n90,
y_is_flip = self.widgimage.y_is_flip)
#title='Image from %s...' % self.ifname,
logger.info('Image is loaded', __name__ )
return
else :
logger.info('New image is N/A !', __name__ )
return
file_filter = 'Files (*.txt *.data *.npy)\nAll files (*)'
path = gu.get_open_fname_through_dialog_box(self, self.ifname, 'Select file with image', filter=file_filter)
if path == None or path == '' :
logger.info('Loading is cancelled...', __name__ )
return
self.ifname = path
arr = gu.get_image_array_from_file(path) # dtype=np.float32)
if arr is None : return
#arr = gu.get_array_from_file(path) # dtype=np.float32)
#print 'arr:\n', arr
self.widgimage.set_image_array_new(arr,
rot_ang_n90 = self.widgimage.rot_ang_n90,
y_is_flip = self.widgimage.y_is_flip)
def getHeight(self):
logger.debug('getHeight', __name__)
h=0
#if self.gui_table is not None :
# h += self.gui_table.height()
h += 40 # for self.gui_more
return h
def closeEvent(self, event):
logger.debug('closeEvent', __name__)
self.disconnectFromThread1()
try : del cp.guirunsplit # GUIRunSplit
except : pass
def onStatusMerge(self):
logger.debug('onStatusMerge', __name__)
bstatus, bstatus_str = bjcora.status_batch_job_for_cora_merge()
fstatus, fstatus_str = bjcora.status_for_cora_merge_files(comment='')
status_str = '3. MERGE: ' + bstatus_str + ' ' + fstatus_str
self.setStatusMessage(fstatus, self.lab_status_merge, status_str)
self.setStatusButton(fstatus)
def on_but(self):
but = self.get_pushed_but()
msg = 'on_but ' + str(but.text())
logger.debug(msg, __name__ )
#if self.verb : print msg
but_text = str(but.text())
#Set MODE
if but_text in self.list_of_modes :
self.fig.my_mode = but_text # Sets mode for Drag objects
if self.fig.my_mode == 'Zoom' :
self.widgimage.connectZoomMode()
self.disconnect_all()
self.current_form = None
else :
self.widgimage.disconnectZoomMode()
#Set FORM
if but_text in self.list_of_forms :
self.disconnect_all()
self.current_form = but_text
self.connect_form(self.current_form) # Connect objects for NEW form
self.setButtonStyle()
self.setStatus()
def onClickExpand(self):
logger.debug('onClickExpand', __name__)
#self.gui_add = QtGui.QLabel('Additional information')
self.gui_add = GUIDarkListItemAdd(self, self.str_run_num)
self.hboxW.addWidget(self.gui_add)
self.setFixedHeight( self.height() + self.gui_add.height() )
def closeEvent(self, event):
logger.debug('closeEvent', __name__)
try : del cp.guisystemsettingsleft # GUISystemSettingsLeft
except : pass
try : cp.guiccdsettings.close()
except : pass
def makeTabBar(self,mode=None) :
#if mode != None : self.tab_bar.close()
self.tab_bar = QtGui.QTabBar()
#Uses self.list_of_tabnames
self.ind_tab_0 = self.tab_bar.addTab( self.list_of_tabnames[0] )
self.ind_tab_1 = self.tab_bar.addTab( self.list_of_tabnames[1] )
self.tab_bar.setTabTextColor(self.ind_tab_0, QtGui.QColor('magenta'))
self.tab_bar.setTabTextColor(self.ind_tab_1, QtGui.QColor('magenta'))
self.tab_bar.setShape(QtGui.QTabBar.RoundedNorth)
#self.tab_bar.setTabEnabled(1, False)
#self.tab_bar.setTabEnabled(2, False)
#self.tab_bar.setTabEnabled(3, False)
#self.tab_bar.setTabEnabled(4, False)
try :
tab_index = self.list_of_tabnames.index(cp.current_fmanager_tab.value())
except :
tab_index = 3
cp.current_fmanager_tab.setValue(self.list_of_tabnames[tab_index])
self.tab_bar.setCurrentIndex(tab_index)
logger.debug(' make_tab_bar - set mode: ' + cp.current_fmanager_tab.value(), __name__)
self.connect(self.tab_bar, QtCore.SIGNAL('currentChanged(int)'), self.onTabBar)
def getArray(self,imon):
logger.debug('getArray for imon: '+str(imon), __name__)
arr_all = gu.get_array_from_file(fnm.path_data_scan_monitors_data())
if arr_all == None : return None
logger.debug('Array shape: ' + str(arr_all.shape), __name__)
ibase = 1+imon*4
arr_imon = arr_all[:,ibase:ibase+4]
#print 'arr_imon:\n', arr_imon
#print 'arr_imon.shape:', arr_imon.shape
#mask = self.maskForIMonChannels(imon)
#npmask = np.array(mask,dtype=float)
npmask = self.npIntMaskForIMonChannels(imon)
size = arr_imon.shape[0]
npcol1 = np.ones(size)
X,Y = np.meshgrid(npmask,npcol1)
arr_prod = (arr_imon * X)
arr_sum = arr_prod.sum(1)
#print 'npmask=', npmask
#print 'size=', size
#print X
#print X.shape
#print arr_imon
#print arr_imon.shape
#print arr_prod
#print arr_prod.shape
return arr_sum
def onButEvaluate(self):
logger.debug('onButEvaluate', __name__)
det = self.get_detector_selected()
if det is None : return
list_of_metrology_scripts = cp.dict_of_metrology_scripts[det]
if self.script == 'Select' :
msg = 'Script for processing metrology file is not selected. Select it first...'
logger.warning(msg, __name__)
return
#print 'list_of_metrology_scripts', list_of_metrology_scripts
#for CSPAD script CSPADV1
if det == cp.list_of_dets[0] and self.script == list_of_metrology_scripts[0] :
msg = 'Evaluate parameters for %s using script %s' % (det, self.script)
logger.info(msg, __name__)
self.procCspadV1()
# for other detectors and scripts for now...
else :
msg = 'Script %s is not yet implemented for detector %s...' % (self.script, det)
logger.warning(msg, __name__)
return
def closeEvent(self, event):
logger.debug('closeEvent', self.name)
if cp.res_save_log :
logger.saveLogInFile ( fnm.log_file() )
logger.saveLogTotalInFile( fnm.log_file_total() )
#try : cp.guifiles.close()
#except : pass
#try : cp.guisetupinfo.close()
#except : pass
#try : cp.guianasettings.close()
#except : pass
#try : cp.guisystemsettings.close()
#except : pass
#try : cp.guiviewresults.close()
#except : pass
#try : cp.guirun.close()
#except : pass
try : cp.guilogger.close()
except : pass
try : cp.guifilebrowser.close()
except : pass
def closeEvent(self, event):
logger.debug('closeEvent', self.name)
try : cp.guifilebrowser.close()
except : pass
try : cp.plotimgspe.close()
except : pass
def closeEvent(self, event):
logger.debug('closeEvent', __name__)
try : cp.guiviewcontrol.close()
except : pass
try : del cp.guiviewresults # GUIViewResults
except : pass
def on_but_browser (self):
logger.debug('on_but_browser', __name__)
try :
cp.guifilebrowser.close()
except :
cp.guifilebrowser = GUIFileBrowser(None, [fnm.path_blem()])
cp.guifilebrowser.move(cp.guimain.pos().__add__(QtCore.QPoint(720,120)))
cp.guifilebrowser.show()
def onRun (self):
logger.debug('onRun', self.name)
try :
cp.guirun.close()
except :
cp.guirun = GUIRun()
cp.guirun.move(self.pos().__add__(QtCore.QPoint(160,195))) # open window with offset w.r.t. parent
cp.guirun.show()
def onViewResults(self):
logger.debug('onViewResults', self.name)
try :
cp.guiviewresults.close()
except :
cp.guiviewresults = GUIViewResults()
cp.guiviewresults.move(self.pos().__add__(QtCore.QPoint(160,230))) # open window with offset w.r.t. parent
cp.guiviewresults.show()
def onSystem(self):
logger.debug('onSystem', self.name)
try :
cp.guisystemsettings.close()
except :
cp.guisystemsettings = GUISystemSettings()
cp.guisystemsettings.move(self.pos().__add__(QtCore.QPoint(160,160))) # open window with offset w.r.t. parent
cp.guisystemsettings.show()
def onIntMon(self):
logger.debug('onIntMon', self.name)
try :
cp.guiintensitymonitors.close()
except :
cp.guiintensitymonitors = GUIIntensityMonitors()
cp.guiintensitymonitors.move(self.pos().__add__(QtCore.QPoint(160,160))) # open window with offset w.r.t. parent
cp.guiintensitymonitors.show()
def getHeight(self):
logger.debug('getHeight', __name__)
h=0
#h += 30 # self.lab_dir.height()
if self.gui_table is not None :
h += self.gui_table.height()
h += 50 # for self.gui_more
return h
def onAnaSettings(self):
logger.debug('onAnaSettings', self.name)
try :
cp.guianasettings.close()
except :
cp.guianasettings = GUIAnaSettings()
cp.guianasettings.move(self.pos().__add__(QtCore.QPoint(160,130))) # open window with offset w.r.t. parent
cp.guianasettings.show()
def on_but_status(self):
logger.debug('on_but_status', __name__)
logger.info('='*110, __name__)
bjpeds.check_work_files_for_pedestals()
bjpeds.check_batch_job_for_peds_scan()
bjpeds.check_batch_job_for_peds_aver()
self.check_status()
def onFBrowser (self):
logger.debug('onFBrowser', self.name)
try :
cp.guifilebrowser.close()
except :
cp.guifilebrowser = GUIFileBrowser(None, fnm.get_list_of_files_total())
cp.guifilebrowser.move(self.pos().__add__(QtCore.QPoint(240,40))) # open window with offset w.r.t. parent
cp.guifilebrowser.show()
def redrawArray(self,imon):
logger.debug('plotIMon', __name__)
arr = self.getArray(imon)
if arr == None : return
try :
cp.plotarray.set_array(arr, title=self.titleForIMon(imon))
except :
pass
def startFileBrowser(self, msg):
logger.debug('Start the GUIHelp.', __name__)
self.box_txt.setText(msg)
self.setStatus(0, 'Status: show help info...')
def onItemDoubleClick(self, item):
logger.debug('onItemDoubleClick', __name__)
def onEdiFrom(self):
logger.debug('onEdiFrom', __name__)
self.str_run_from = str(self.edi_from.displayText())
msg = 'Set the run validity range from %s' % self.str_run_from
logger.info(msg, __name__)
def onEdiTo(self):
logger.debug('onEdiTo', __name__)
self.str_run_to = str(self.edi_to.displayText())
msg = 'Set the run validity range up to %s' % self.str_run_to
logger.info(msg, __name__)
def closeEvent(self, event):
logger.debug('closeEvent', __name__)
try : del cp.guiviewcontrol # GUIViewControl
except : pass # silently ignore
def closeEvent(self, event):
logger.debug('closeEvent', __name__)
def onItemShrink(self, widg):
run, item = self.getRunAndItemForWidget(widg)
logger.debug('Shrink widget for run %s' % run, __name__)
item.setSizeHint(widg.size())
def onEdit(self):
logger.debug('onEdit', __name__)
edi = self.edi
par = cp.res_fname
par.setValue( str(edi.displayText()) )
logger.info('Set parameter = ' + str( par.value()), __name__ )
def onExit(self):
logger.debug('onExit', self.name)
self.close()
def print_substitution_dict(self):
logger.debug('Substitution dictionary:', __name__)
for k, v in self.d_subs.iteritems():
msg = '%s : %s' % (k.ljust(16), v.ljust(32))
logger.debug(msg)
def setFieldsEnabled(self, is_enabled=True):
logger.debug('Set fields enabled: %s' % is_enabled, __name__)
#self.lab_rnum .setEnabled(is_enabled)
self.but_expand_shrink.setEnabled(is_enabled)
self.gui_run.setFieldsEnabled(is_enabled)
def onClose(self):
logger.debug('onClose', __name__)
self.close()
def setStatusMessage(self, msg='msg is empty...'):
logger.debug('Set status message', __name__)
self.box_txt.setText(msg)
def getHeight(self):
logger.debug('getHeight', __name__)
h = self.gui_run.height()
if self.gui_add is not None:
h += self.gui_add.getHeight()
return h + 10