def __init__(self, **kwargs):
MASTObj.__init__(self, ALLOWED_KEYS, **kwargs)
self.section_end = '$end'
self.delimiter = ' ' # how we're breaking up each line
self.section_parsers = {\
'mast' : self.parse_mast_section,
'structure' : self.parse_structure_section,
'scaling' : self.parse_scaling_section,
'ingredients' : self.parse_ingredients_section,
'defects' : self.parse_defects_section,
'recipe' : self.parse_recipe_section,
'neb' : self.parse_neb_section,
'chemical_potentials' : self.parse_chemical_potentials_section,
'summary' : self.parse_summary_section,
'personal_recipe' : self.parse_personal_recipe_section
}
scratchpath = dirutil.get_mast_scratch_path()
inputlocation = os.path.dirname(self.keywords['inputfile'])
if (inputlocation == ""):
self.logger = loggerutils.get_mast_logger("mast input parser")
elif scratchpath not in inputlocation:
self.logger = loggerutils.get_mast_logger("mast input parser")
else:
self.logger = loggerutils.get_mast_logger("mast input parser %s" %
inputlocation)
def get_job_error_file(ingpath):
"""
Return the job error file full path
Args:
ingpath <str>: ingredient path
"""
logger = loggerutils.get_mast_logger("mast queue commands")
jobid = get_last_jobid(ingpath)
tryfile = my_queue_commands.get_approx_job_error_file(jobid)
#logger.info("Try this search string: %s" % tryfile)
if not os.path.isdir(ingpath):
return None
dircontents = os.listdir(ingpath)
tryitems = list()
for diritem in dircontents:
if tryfile in diritem:
tryitems.append(os.path.join(ingpath, diritem))
if len(tryitems) == 0:
logger.warning("No job error file found for %s" % ingpath)
return None
if len(tryitems) > 1:
logger.warning(
"More than one job error file found for %s. Using first file %s" %
(ingpath, tryitems[0]))
return tryitems[0]
def __init__(self, inputtxt="", plot_threshold=0.01):
"""Initialize defect formation energy ingredient
Args:
inputtxt <str>: Input text file, containing:
dfe_label1=perfect_label defected_label
dfe_label2=perfect_label defected_label
dfe_label3=perfect_label defected_label etc.
bandgap_lda_or_gga=<float>
bandgap_hse_or_expt=<float>
plot_threshold <float>: Plotting threshold value
"""
self.logger = loggerutils.get_mast_logger("DFE ingredient")
self.ingdir = os.getcwd() #Should be run in current directory
self.recdir = os.path.dirname(self.ingdir)
self.plot_threshold = plot_threshold
ipdir = os.path.join(self.recdir, 'input.inp')
os.chdir(self.recdir) #change to recipe directory
ipparser = InputParser(inputfile=ipdir)
self.input_options = ipparser.parse()
os.chdir(self.ingdir) #change back to ingredient directory
self.dirs = dict()
self.bandgap_lda_or_gga = 0.0
self.bandgap_hse_or_expt = 0.0
self.read_input_file(inputtxt)
self.e_defects = dict()
def __init__(self, inputtxt="", plot_threshold=0.01):
"""Initialize defect formation energy ingredient
Args:
inputtxt <str>: Input text file, containing:
dfe_label1=perfect_label defected_label
dfe_label2=perfect_label defected_label
dfe_label3=perfect_label defected_label etc.
bandgap_lda_or_gga=<float>
bandgap_hse_or_expt=<float>
plot_threshold <float>: Plotting threshold value
"""
self.logger = loggerutils.get_mast_logger("DFE ingredient")
self.ingdir = os.getcwd() #Should be run in current directory
self.recdir = os.path.dirname(self.ingdir)
self.plot_threshold = plot_threshold
ipdir = os.path.join(self.recdir,'input.inp')
os.chdir(self.recdir) #change to recipe directory
ipparser = InputParser(inputfile=ipdir)
self.input_options = ipparser.parse()
os.chdir(self.ingdir) #change back to ingredient directory
self.dirs = dict()
self.bandgap_lda_or_gga = 0.0
self.bandgap_hse_or_expt = 0.0
self.read_input_file(inputtxt)
self.e_defects = dict()
def __init__(self, **kwargs):
MASTObj.__init__(self, ALLOWED_KEYS, **kwargs)
self.recipe_file = self.keywords['recipeFile']
self.input_options = self.keywords['inputOptions']
self.structure = self.keywords['structure']
self.work_dir = self.keywords['workingDirectory']
self.logger = loggerutils.get_mast_logger("recipe setup %s" % self.work_dir)
self.metafile = Metadata(metafile='%s/metadata.txt' % self.work_dir)
self.logger.debug('Setting up the recipe based on the personal recipe contents passed in self.recipe_file')
def __init__(self):
self.scratch = dirutil.get_mast_scratch_path()
self._ARCHIVE = dirutil.get_mast_archive_path()
self.make_directories()
self.logger = loggerutils.get_mast_logger('mast_monitor')
self.logger.info("%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%")
self.logger.info("\nMAST monitor started at %s.\n" % time.asctime())
self.logger.info("%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%")
self.run(1)
def __init__(self):
self.scratch = dirutil.get_mast_scratch_path()
self._ARCHIVE = dirutil.get_mast_archive_path()
self.make_directories()
self.logger = loggerutils.get_mast_logger('mast_monitor')
self.logger.info("%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%")
self.logger.info("\nMAST monitor started at %s.\n" % time.asctime())
self.logger.info("%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%")
self.run(1)
def __init__(self, allowed_keys, **kwargs):
allowed_keys_base = dict()
allowed_keys_base.update(allowed_keys)
MASTObj.__init__(self, allowed_keys_base, **kwargs)
work_dir = '/'.join(self.keywords['name'].split('/')[:-1])
topmeta = Metadata(metafile='%s/metadata.txt' % work_dir)
data = topmeta.read_data(self.keywords['name'].split('/')[-1])
self.meta_dict = dict()
if data:
for datum in data.split(';'):
self.meta_dict[datum.split(':')[0]] = datum.split(':')[1].strip()
self.metafile = Metadata(metafile='%s/metadata.txt' % self.keywords['name'])
self.program = self.keywords['program_keys']['mast_program'].lower()
self.logger = loggerutils.get_mast_logger(self.keywords['name'])
sdir=os.path.join(os.path.dirname(self.keywords['name']),"structure_index_files")
if os.path.exists(sdir):
self.atomindex = AtomIndex(structure_index_directory=sdir)
else:
self.atomindex = None
if self.program == 'vasp':
self.checker = VaspChecker(name=self.keywords['name'],
program_keys = self.keywords['program_keys'],
structure = self.keywords['structure'])
self.errhandler = VaspError(name=self.keywords['name'],
program_keys = self.keywords['program_keys'],
structure = self.keywords['structure'])
elif self.program == 'vasp_neb':
self.checker = VaspNEBChecker(name=self.keywords['name'],
program_keys = self.keywords['program_keys'],
structure = self.keywords['structure'])
self.errhandler = VaspNEBError(name=self.keywords['name'],
program_keys = self.keywords['program_keys'],
structure = self.keywords['structure'])
elif self.program == 'phon':
self.checker = PhonChecker(name=self.keywords['name'],program_keys=self.keywords['program_keys'],structure=self.keywords['structure'])
self.errhandler = PhonError(name=self.keywords['name'],program_keys=self.keywords['program_keys'],structure=self.keywords['structure'])
elif self.program == 'lammps':
self.checker = LammpsChecker(name=self.keywords['name'],program_keys=self.keywords['program_keys'],structure=self.keywords['structure'])
self.errhandler = GenericError(name=self.keywords['name'],program_keys=self.keywords['program_keys'],structure=self.keywords['structure'])
elif self.program =='structopt':
self.checker = StructoptChecker(name=self.keywords['name'],program_keys=self.keywords['program_keys'],structure=self.keywords['structure'])
self.errhandler = GenericError(name=self.keywords['name'],program_keys=self.keywords['program_keys'],structure=self.keywords['structure'])
else:
allowed_keys={'name','program_keys','structure'}
self.checker = GenericChecker(name=self.keywords['name'],program_keys=self.keywords['program_keys'],structure=self.keywords['structure'])
self.errhandler = GenericError(name=self.keywords['name'],program_keys=self.keywords['program_keys'],structure=self.keywords['structure'])
def __init__(self, **kwargs):
MASTObj.__init__(self, ALLOWED_KEYS, **kwargs)
self.recipe_file = self.keywords['recipeFile']
self.input_options = self.keywords['inputOptions']
self.structure = self.keywords['structure']
self.work_dir = self.keywords['workingDirectory']
self.logger = loggerutils.get_mast_logger("recipe setup %s" %
self.work_dir)
self.metafile = Metadata(metafile='%s/metadata.txt' % self.work_dir)
self.logger.debug(
'Setting up the recipe based on the personal recipe contents passed in self.recipe_file'
)
def __init__(self, ingpath, keywords, archivelist=list()):
"""
Args:
ingpath <str>: ingredient path
keywords <dict>: keyword dictionary
archivelist <list of str>: list of file names to be archived
e.g. OUTCAR (optional)
Returns:
modifies submission script to add more nodes
"""
self.ingpath = ingpath
self.archivelist = archivelist
self.logger = loggerutils.get_mast_logger(self.ingpath)
self.keywords = keywords
def __init__(self, ingpath, keywords, archivelist=list()):
"""
Args:
ingpath <str>: ingredient path
keywords <dict>: keyword dictionary
archivelist <list of str>: list of file names to be archived
e.g. OUTCAR (optional)
Returns:
modifies submission script to add more nodes
"""
self.ingpath = ingpath
self.archivelist = archivelist
self.logger = loggerutils.get_mast_logger(self.ingpath)
self.keywords = keywords
def __init__(self, working_directory):
#self.name = name
self.ingredients = dict() #name: status
self.update_methods = dict()
self.parents_to_check= dict()
self.run_methods = dict()
self.write_methods = dict()
self.ready_methods = dict()
self.complete_methods = dict()
self.ingred_input_options = dict()
self.summary_options = ""
self.status="I"
self.working_directory = working_directory
self.logger = loggerutils.get_mast_logger(self.working_directory)
def __init__(self, **kwargs):
MASTObj.__init__(self, ALLOWED_KEYS, **kwargs)
self.section_end = '$end'
self.delimiter = ' ' # how we're breaking up each line
self.section_parsers = {\
'mast' : self.parse_mast_section,
'structure' : self.parse_structure_section,
'scaling' : self.parse_scaling_section,
'ingredients' : self.parse_ingredients_section,
'defects' : self.parse_defects_section,
'recipe' : self.parse_recipe_section,
'neb' : self.parse_neb_section,
'chemical_potentials' : self.parse_chemical_potentials_section,
'summary' : self.parse_summary_section,
'personal_recipe' : self.parse_personal_recipe_section
}
scratchpath = dirutil.get_mast_scratch_path()
inputlocation = os.path.dirname(self.keywords['inputfile'])
if (inputlocation == ""):
self.logger = loggerutils.get_mast_logger("mast input parser")
elif scratchpath not in inputlocation:
self.logger = loggerutils.get_mast_logger("mast input parser")
else:
self.logger = loggerutils.get_mast_logger("mast input parser %s" % inputlocation)
def __init__(self, working_directory):
#self.name = name
self.ingredients = dict() #name: status
self.update_methods = dict()
self.parents_to_check= dict()
self.run_methods = dict()
self.write_methods = dict()
self.ready_methods = dict()
self.complete_methods = dict()
self.ingred_input_options = dict()
self.summary_options = ""
self.status="I"
self.working_directory = working_directory
self.logger = loggerutils.get_mast_logger(self.working_directory)
self.ingred_to_check = ""
def __init__(self, ingpath, archivelist=list(), copyfromlist=list(), copytolist=list()):
"""
Args: (archivelist is different from the custodian version)
ingpath <str>: ingredient path
archivelist <list of str>: list of file names to archive
copyfromlist <list of str>: list of file names to copy from
copytolist <list of str>: list of file names to copy to; one-to
-one correspondence with copyfromlist (e.g. copy from
CONTCAR to POSCAR for VASP)
Returns:
Archives files to error.#.tar.gz
"""
self.ingpath = ingpath
self.archivelist = list(archivelist)
self.copyfromlist = list(copyfromlist)
self.copytolist = list(copytolist)
self.logger = loggerutils.get_mast_logger(self.ingpath)
def __init__(self, **kwargs):
allowed_keys = {
'input_options': (InputOptions, None, 'Input options'),
'structure_index_directory': (str, "structure_index_files", "Structure index directory")
}
MASTObj.__init__(self, allowed_keys, **kwargs)
self.logger = loggerutils.get_mast_logger("atom_indexing")
self.sdir = self.keywords['structure_index_directory']
self.input_options = self.keywords['input_options']
if self.input_options == None:
return
self.scaling = self.input_options.get_item('scaling')
self.logger.info("Scaling: %s" % self.scaling)
if self.scaling == None:
self.scaling = dict()
self.startstr = self.input_options.get_item('structure','structure')
self.atomcount=1
return
def __init__(self, **kwargs):
allowed_keys = {
"struc_work1": (
Structure,
None,
"First working Pymatgen Structure object (e.g. create a defect, or use work1 and work2 to interpolate positions)",
),
"struc_work2": (Structure, None, "Second working Pymatgen Structure object"),
"struc_init": (Structure, None, "Initial structure at the beginning of the MAST recipe"),
"scaling_size": (str, None, "Scaling size"),
"name": (str, get_mast_control_path(), "Name of ingredient"),
}
MASTObj.__init__(self, allowed_keys, **kwargs)
rname = os.path.dirname(self.keywords["name"])
self.logger = loggerutils.get_mast_logger(rname)
self.metafile = Metadata(metafile="%s/metadata.txt" % self.keywords["name"])
self.scaleinput = ""
self.transform_scaling_size()
return
def __init__(self, **kwargs):
allowed_keys = {
'input_options': (InputOptions, None, 'Input options'),
'structure_index_directory':
(str, "structure_index_files", "Structure index directory")
}
MASTObj.__init__(self, allowed_keys, **kwargs)
self.logger = loggerutils.get_mast_logger("atom_indexing")
self.sdir = self.keywords['structure_index_directory']
self.input_options = self.keywords['input_options']
if self.input_options == None:
return
self.scaling = self.input_options.get_item('scaling')
self.logger.info("Scaling: %s" % self.scaling)
if self.scaling == None:
self.scaling = dict()
self.startstr = self.input_options.get_item('structure', 'structure')
self.atomcount = 1
return
def __init__(self,
ingpath,
archivelist=list(),
copyfromlist=list(),
copytolist=list()):
"""
Args: (archivelist is different from the custodian version)
ingpath <str>: ingredient path
archivelist <list of str>: list of file names to archive
copyfromlist <list of str>: list of file names to copy from
copytolist <list of str>: list of file names to copy to; one-to
-one correspondence with copyfromlist (e.g. copy from
CONTCAR to POSCAR for VASP)
Returns:
Archives files to error.#.tar.gz
"""
self.ingpath = ingpath
self.archivelist = list(archivelist)
self.copyfromlist = list(copyfromlist)
self.copytolist = list(copytolist)
self.logger = loggerutils.get_mast_logger(self.ingpath)
def __init__(self, **kwargs):
allowed_keys = {
'struc_work1':
(Structure, None,
'First working Pymatgen Structure object (e.g. create a defect, or use work1 and work2 to interpolate positions)'
),
'struc_work2':
(Structure, None, 'Second working Pymatgen Structure object'),
'struc_init':
(Structure, None,
'Initial structure at the beginning of the MAST recipe'),
'scaling_size': (str, None, 'Scaling size'),
'name': (str, get_mast_control_path(), 'Name of ingredient')
}
MASTObj.__init__(self, allowed_keys, **kwargs)
rname = os.path.dirname(self.keywords['name'])
self.logger = loggerutils.get_mast_logger(rname)
self.metafile = Metadata(metafile='%s/metadata.txt' %
self.keywords['name'])
self.scaleinput = ""
self.transform_scaling_size()
return
def get_job_error_file(ingpath):
"""
Return the job error file full path
Args:
ingpath <str>: ingredient path
"""
logger = loggerutils.get_mast_logger("mast queue commands")
jobid = get_last_jobid(ingpath)
tryfile = my_queue_commands.get_approx_job_error_file(jobid)
#logger.info("Try this search string: %s" % tryfile)
if not os.path.isdir(ingpath):
return None
dircontents = os.listdir(ingpath)
tryitems = list()
for diritem in dircontents:
if tryfile in diritem:
tryitems.append(os.path.join(ingpath, diritem))
if len(tryitems) == 0:
logger.warning("No job error file found for %s" % ingpath)
return None
if len(tryitems) > 1:
logger.warning("More than one job error file found for %s. Using first file %s" % (ingpath, tryitems[0]))
return tryitems[0]
def __init__(self, allowed_keys, **kwargs):
allowed_keys_base = dict()
allowed_keys_base.update(allowed_keys)
MASTObj.__init__(self, allowed_keys_base, **kwargs)
self.logger = loggerutils.get_mast_logger(self.keywords['name'])
def __init__(self, allowed_keys, **kwargs):
allowed_keys_base = dict()
allowed_keys_base.update(allowed_keys)
MASTObj.__init__(self, allowed_keys_base, **kwargs)
work_dir = '/'.join(self.keywords['name'].split('/')[:-1])
topmeta = Metadata(metafile='%s/metadata.txt' % work_dir)
data = topmeta.read_data(self.keywords['name'].split('/')[-1])
self.meta_dict = dict()
if data:
for datum in data.split(';'):
self.meta_dict[datum.split(':')[0]] = datum.split(
':')[1].strip()
self.metafile = Metadata(metafile='%s/metadata.txt' %
self.keywords['name'])
self.program = self.keywords['program_keys']['mast_program'].lower()
self.logger = loggerutils.get_mast_logger(self.keywords['name'])
sdir = os.path.join(os.path.dirname(self.keywords['name']),
"structure_index_files")
if os.path.exists(sdir):
self.atomindex = AtomIndex(structure_index_directory=sdir)
else:
self.atomindex = None
if self.program == 'vasp':
self.checker = VaspChecker(
name=self.keywords['name'],
program_keys=self.keywords['program_keys'],
structure=self.keywords['structure'])
self.errhandler = VaspError(
name=self.keywords['name'],
program_keys=self.keywords['program_keys'],
structure=self.keywords['structure'])
elif self.program == 'vasp_neb':
self.checker = VaspNEBChecker(
name=self.keywords['name'],
program_keys=self.keywords['program_keys'],
structure=self.keywords['structure'])
self.errhandler = VaspNEBError(
name=self.keywords['name'],
program_keys=self.keywords['program_keys'],
structure=self.keywords['structure'])
elif self.program == 'phon':
self.checker = PhonChecker(
name=self.keywords['name'],
program_keys=self.keywords['program_keys'],
structure=self.keywords['structure'])
self.errhandler = PhonError(
name=self.keywords['name'],
program_keys=self.keywords['program_keys'],
structure=self.keywords['structure'])
elif self.program == 'lammps':
self.checker = LammpsChecker(
name=self.keywords['name'],
program_keys=self.keywords['program_keys'],
structure=self.keywords['structure'])
self.errhandler = GenericError(
name=self.keywords['name'],
program_keys=self.keywords['program_keys'],
structure=self.keywords['structure'])
elif self.program == 'structopt':
self.checker = StructoptChecker(
name=self.keywords['name'],
program_keys=self.keywords['program_keys'],
structure=self.keywords['structure'])
self.errhandler = GenericError(
name=self.keywords['name'],
program_keys=self.keywords['program_keys'],
structure=self.keywords['structure'])
else:
allowed_keys = {'name', 'program_keys', 'structure'}
self.checker = GenericChecker(
name=self.keywords['name'],
program_keys=self.keywords['program_keys'],
structure=self.keywords['structure'])
self.errhandler = GenericError(
name=self.keywords['name'],
program_keys=self.keywords['program_keys'],
structure=self.keywords['structure'])
def read_recipe(rawrlist, verbose=0):
"""Read the indented recipe.
"Recipe" is a protected keyword signaling the recipe name.
Args:
rawrlist <list of str>: List of recipe lines from $recipe section of input file
Returns:
totpdict <dict>: Dictionary of
[parentname][child]=[parent method group]
totcdict <dict>: Dictionary of
[childname]['parents']=[parent,parent,...]
[childname]['method']=[method group]
rname <str>: Recipe name
"""
logger = loggerutils.get_mast_logger("read_recipe")
rfile = list(rawrlist) #MASTFile(filename)
rdata = list()
#preprocess by removing blank lines and any "recipe" line
for line in rfile:
duplicate = line
if ((len(duplicate) - len(duplicate.lstrip(' '))) % 4 != 0):
raise MASTError(
"recipe/recipeutility",
"Recipe at %s contains incorrect number of whitespace chars at the beginning of the line! Please convert all indentations to the appropriate number of groups of four spaces."
% filename)
if '\t' in line:
raise MASTError(
"recipe/recipeutility",
"Recipe at %s contains tabs! Please convert all indentations to the appropriate number of groups of four spaces."
% filename)
myline = line.rstrip() #right-hand strip of carriage return only
if len(myline) == 0: #blank line
pass
#elif (len(myline) > 6) and (myline[0:6].lower() == "recipe"):
#rname = myline.split()[1]
elif myline.strip()[0] == "#": #comment line, hash starting wherever
pass
else:
rdata.append(myline)
subrdict = split_into_subrecipes(rdata)
howtorun = dict()
parentstocheck = dict()
howtoupdate = dict()
for subkey in subrdict.keys():
idict = make_indentation_dictionary(subrdict[subkey])
if verbose == 1:
ikeys = idict.keys()
ikeys.sort()
for indentkey in ikeys:
logger.info("Indent: %s" % indentkey)
for myitem in idict[indentkey]:
logger.info(myitem)
[onehtu, oneptc, onehtr] = parse_indentation_dict(idict)
for pkey in onehtu.keys():
if not (pkey in howtoupdate.keys()):
howtoupdate[pkey] = dict()
for pmkey in onehtu[pkey].keys():
howtoupdate[pkey][pmkey] = onehtu[pkey][pmkey]
for ckey in oneptc.keys():
if not (ckey in parentstocheck.keys()):
parentstocheck[ckey] = list()
parentstocheck[ckey].extend(oneptc[ckey])
howtorun[ckey] = onehtr[ckey]
if verbose == 1:
logger.info("How-to-update-children tree: ")
keylist = howtoupdate.keys()
keylist.sort()
for htukey in keylist:
logger.info("%s: %s" % (htukey, howtoupdate[htukey]))
clist = parentstocheck.keys()
clist.sort()
logger.info("Parents-to-check tree: ")
for ckey in clist:
logger.info("%s: %s" % (ckey, parentstocheck[ckey]))
logger.info("How-to-run tree: ")
for ckey in clist:
logger.info("%s: %s" % (ckey, howtorun[ckey]))
return [howtoupdate, parentstocheck, howtorun]
def read_recipe(rawrlist, verbose=0):
"""Read the indented recipe.
"Recipe" is a protected keyword signaling the recipe name.
Args:
rawrlist <list of str>: List of recipe lines from $recipe section of input file
Returns:
totpdict <dict>: Dictionary of
[parentname][child]=[parent method group]
totcdict <dict>: Dictionary of
[childname]['parents']=[parent,parent,...]
[childname]['method']=[method group]
rname <str>: Recipe name
"""
logger=loggerutils.get_mast_logger("read_recipe")
rfile = list(rawrlist) #MASTFile(filename)
rdata = list()
#preprocess by removing blank lines and any "recipe" line
for line in rfile:
duplicate = line
if ((len(duplicate) - len(duplicate.lstrip(' '))) % 4 != 0):
raise MASTError("recipe/recipeutility", "Recipe at %s contains incorrect number of whitespace chars at the beginning of the line! Please convert all indentations to the appropriate number of groups of four spaces." % filename)
if '\t' in line:
raise MASTError("recipe/recipeutility", "Recipe at %s contains tabs! Please convert all indentations to the appropriate number of groups of four spaces." % filename)
myline = line.rstrip() #right-hand strip of carriage return only
if len(myline) == 0: #blank line
pass
#elif (len(myline) > 6) and (myline[0:6].lower() == "recipe"):
#rname = myline.split()[1]
elif myline.strip()[0] == "#": #comment line, hash starting wherever
pass
else:
rdata.append(myline)
subrdict = split_into_subrecipes(rdata)
howtorun=dict()
parentstocheck=dict()
howtoupdate=dict()
for subkey in subrdict.keys():
idict = make_indentation_dictionary(subrdict[subkey])
if verbose == 1:
ikeys = idict.keys()
ikeys.sort()
for indentkey in ikeys:
logger.info("Indent: %s" % indentkey)
for myitem in idict[indentkey]:
logger.info(myitem)
[onehtu, oneptc, onehtr]=parse_indentation_dict(idict)
for pkey in onehtu.keys():
if not (pkey in howtoupdate.keys()):
howtoupdate[pkey]=dict()
for pmkey in onehtu[pkey].keys():
howtoupdate[pkey][pmkey]=onehtu[pkey][pmkey]
for ckey in oneptc.keys():
if not (ckey in parentstocheck.keys()):
parentstocheck[ckey]=list()
parentstocheck[ckey].extend(oneptc[ckey])
howtorun[ckey]=onehtr[ckey]
if verbose==1:
logger.info("How-to-update-children tree: ")
keylist = howtoupdate.keys()
keylist.sort()
for htukey in keylist:
logger.info("%s: %s" % (htukey, howtoupdate[htukey]))
clist = parentstocheck.keys()
clist.sort()
logger.info("Parents-to-check tree: ")
for ckey in clist:
logger.info("%s: %s" % (ckey, parentstocheck[ckey]))
logger.info("How-to-run tree: ")
for ckey in clist:
logger.info("%s: %s" % (ckey, howtorun[ckey]))
return [howtoupdate, parentstocheck, howtorun]