def __init__(self, node, parent = None):
Element.__init__(self, node, parent = parent)
attrs = node.getElementsByTagName('p')#for FORMULA and CHARGE if there is <note>
for attr in attrs:
child = attr.firstChild
data = child.data
key, val = data.split(':', 1)
self[str(key.strip()).upper()] = str(val.strip())
def __init__(self, ifile):
self.Doc = xml.dom.minidom.parse(ifile)
modelnode = self.Doc.getElementsByTagName('model')[0]
Element.__init__(self, modelnode)
self.Compartments = self.ParseElementsByTagName('compartment', Compartment)
self.SpeType = self.ParseElementsByTagName('speciesType', Species)#w# v4l2
self.Species = self.ParseElementsByTagName('species', Species)
self.Reactions = self.ParseElementsByTagName('reaction', Reaction)
def __init__(self, node, parent=None):
Element.__init__(self, node, parent=parent)
attrs = node.getElementsByTagName(
'p') #for FORMULA and CHARGE if there is <note>
for attr in attrs:
child = attr.firstChild
data = child.data
key, val = data.split(':', 1)
self[str(key.strip()).upper()] = str(val.strip())
def __init__(self, ifile):
self.Doc = xml.dom.minidom.parse(ifile)
modelnode = self.Doc.getElementsByTagName('model')[0]
Element.__init__(self, modelnode)
self.Compartments = self.ParseElementsByTagName(
'compartment', Compartment)
self.SpeType = self.ParseElementsByTagName('speciesType',
Species) #w# v4l2
self.Species = self.ParseElementsByTagName('species', Species)
self.Reactions = self.ParseElementsByTagName('reaction', Reaction)
def __init__(self, node, parent = None):
Element.__init__(self, node, parent = parent)
assocs = node.getElementsByTagName('p') or node.getElementsByTagName('html:p')#'html:p' or 'p' for association
for assoc in assocs:
child = assoc.firstChild
data = child.data
key, val = data.split(':',1)
self[str(key.strip()).upper()] = str(val.strip())
self.Stoich = self.ParseStoich(node)
self.ParseBounds(node)
self.ParseModifiers(node)#w# get gene rule for iHuman1512 model
def __init__(self, node, parent=None):
Element.__init__(self, node, parent=parent)
assocs = node.getElementsByTagName('p') or node.getElementsByTagName(
'html:p') #'html:p' or 'p' for association
for assoc in assocs:
child = assoc.firstChild
data = child.data
key, val = data.split(':', 1)
self[str(key.strip()).upper()] = str(val.strip())
self.Stoich = self.ParseStoich(node)
self.ParseBounds(node)
self.ParseModifiers(node) #w# get gene rule for iHuman1512 model
def __init__(self, node, parent = None):
Element.__init__(self, node, parent = parent)
self.Species = {}
def __str__(self):
return Element.__str__(self)[:-1] + '\n\t' + str(self.GetStoich())
def __str__(self):
return Element.__str__(self)[:-1] + '\n\t' + str(self.GetStoich())
def __init__(self, node, parent=None):
Element.__init__(self, node, parent=parent)
self.Species = {}