def main():
msg.info('This is %s' % sys.argv[0])
#note that indata (outdata) can not be the same and must be the same text, ['**'], as in the argument input**File (output**File)
trfMT = transform(trfName='Trig_trf',
executor=trigExecutor(name='athena',
exe='athenaMT.py',
exeArgs=['athenaoptsMT'],
inData=['BS'],
outData=['BS_MT']))
addAthenaArguments(trfMT.parser)
addTriggerArgs(trfMT.parser)
trfMT.parseCmdLineArgs(sys.argv[1:])
#any debug statements will work from here onwards if using --verbose or --loglevel DEBUG
#Convert arg names and carry out operations from any of the options that are to be done before running
trigPreRun(trfMT)
#Run the transform and generate final report
trfMT.execute()
trfMT.generateReport()
#Carry out operations from any of the options that are to be done after running
trigPostRun(trfMT)
msg.info("%s stopped at %s, trf exit code %d" %
(sys.argv[0], time.asctime(), trfMT.exitCode))
sys.exit(trfMT.exitCode)
def getTransform():
exeSet = set()
exeSet.add(RivetExecutor("EvgenJobTransforms/skeleton.EVGENtoRivet.py"))
trf = transform(executor=exeSet)
addAthenaArguments(trf.parser)
addStdEvgenArgs(trf.parser)
return trf
def getTransform():
executorSet = set()
for subregion in range(subregions):
executorSet.add(athenaExecutor(name = 'FTKFullSimulationBank{0}'.format(subregion),
skeletonFile = 'TrigFTKSim/skeleton.FTKStandaloneSim.py',
inData = ['RDO','NTUP_FTKIP','TXT_FTKIP'], outData = ['NTUP_FTKTMP_{0}'.format(subregion)],
extraRunargs = {'banksubregion': [subregion]},
# Need to ensure that the correct subregion is used
runtimeRunargs = {'patternbankpath': 'runArgs.patternbank{0}path'.format(subregion),
'fitconstantspath': 'runArgs.fitconstants{0}path'.format(subregion),
'fit711constantspath': 'runArgs.fit711constants{0}path'.format(subregion),
'sectorpath': 'runArgs.sector{0}path'.format(subregion),
'outputNTUP_FTKTMPFile': 'runArgs.outputNTUP_FTKTMP_{0}File'.format(subregion)}))
executorSet.add(athenaExecutor(name = 'FTKSimulationMerge',
skeletonFile = 'TrigFTKSim/skeleton.FTKStandaloneMerge.py',
inData = [tuple([ 'NTUP_FTKTMP_{0}'.format(subregion) for subregion in range(subregions) ])],
outData = ['NTUP_FTKTMP'],
extraRunargs = {'inputNTUP_FTKTMPFile': [ 'tmp.NTUP_FTKTMP_{0}'.format(subregion) for subregion in range(subregions)]},
runtimeRunargs = {'MergeRegion': 'runArgs.bankregion[0]',
'FirstRegion': 'runArgs.bankregion[0]'},
))
trf = transform(executor = executorSet, description = 'FTK Subregion simulate x {0} and merge.'.format(subregions))
addAthenaArguments(trf.parser,maxEventsDefaultSubstep='all')
addFTKSimulationArgs(trf.parser)
return trf
def getTransform(RAWtoALL=False):
executorSet = set()
addRecoSubsteps(executorSet)
trf = transform(executor = executorSet, description = 'General purpose ATLAS digitisation and reconstruction transform'
' Inputs can be HITS, RDO, BS, ESD or AOD, with outputs of RDO, ESD, AOD or DAODs.'
' See https://twiki.cern.ch/twiki/bin/view/AtlasComputing/RecoTf for more details.')
addAthenaArguments(trf.parser)
addDetectorArguments(trf.parser)
addTriggerArguments(trf.parser)
addAllRecoArgs(trf, RAWtoALL)
# For digi step - make sure we can add the digitisation/simulation arguments
# before we add this substep; allows Reco_tf to work without AtlasSimulation
try:
from SimuJobTransforms.simTrfArgs import addForwardDetTrfArgs, addBasicDigiArgs, addPileUpTrfArgs, addCommonSimDigTrfArgs
from SimuJobTransforms.SimTransformUtils import addDigitizationSubstep
addBasicDigiArgs(trf.parser)
addForwardDetTrfArgs(trf.parser)
addPileUpTrfArgs(trf.parser)
addCommonSimDigTrfArgs(trf.parser)
simStepSet = set()
addDigitizationSubstep(simStepSet)
trf.appendToExecutorSet(list(simStepSet)[0])
except ImportError, e:
msg.warning('Failed to import digitisation arguments ({0}). Digitisation substep will not be available.'.format(e))
def getTransform():
executorSet = set()
from EventIndexProducer.EITransformUtils import addEI_MRG_Substep, addEI_MRG_arguments
executorSet.add(
hybridPOOLMergeExecutor(
name='AODMerge',
skeletonFile='RecJobTransforms/skeleton.MergePool_tf.py',
inData=['AOD'],
outData=['AOD_MRG'],
perfMonFile='ntuple_POOLMerge.pmon.gz'))
executorSet.add(
athenaExecutor(
name='AODtoTAG',
skeletonFile='RecJobTransforms/skeleton.AODtoTAG_tf.py',
inData=['AOD_MRG'],
outData=['TAG'],
))
addEI_MRG_Substep(executorSet)
trf = transform(executor=executorSet)
addAthenaArguments(trf.parser)
addDetectorArguments(trf.parser)
addCommonRecTrfArgs(trf.parser)
addMyArgs(trf.parser)
addEI_MRG_arguments(trf.parser)
return trf
def getTransform():
trf = transform(executor = athenaExecutor(name = 'FilterHitTf', substep="filthits", skeletonFile = 'SimuJobTransforms/skeleton.FilterHit.py',
tryDropAndReload = False))
addAthenaArguments(trf.parser)
addDetectorArguments(trf.parser)
addMyArgs(trf.parser)
return trf
def getTransform():
# Get the base transform with all arguments added
trf = transform(executor = athenaExecutor(name = 'FTKPattGenRoot',
skeletonFile = 'TrigFTKBankGen/skeleton.FTKPattBankGenRoot.py'))
addAthenaArguments(trf.parser)
addFTKPattGenArgs(trf.parser)
return trf
def getTransform():
trf = transform(executor = athenaExecutor(name = 'RAWtoESD', skeletonFile = 'RecJobTransforms/skeleton.RAWtoESD_tf.py',
substep = 'r2e',
))
addAthenaArguments(trf.parser)
addMyArgs(trf.parser)
return trf
def getTransform():
trf = transform(executor=athenaExecutor(
name='athena',
skeletonFile=None,
skeletonCA="PyJobTransforms.HelloWorldSkeleton"))
addAthenaArguments(trf.parser)
addDetectorArguments(trf.parser)
return trf
def getTransform():
trf = transform(executor=athenaExecutor(
name='FTKSimulationMerge',
disableMP=True,
skeletonFile='TrigFTKSim/skeleton.FTKStandaloneMerge.py'))
addAthenaArguments(trf.parser)
addFTKMergerArgs(trf.parser)
return trf
def getTransform():
executorSet = set()
from SimuJobTransforms.SimTransformUtils import addSimValidationSubstep, addHITSValidArguments
addSimValidationSubstep(executorSet)
trf = transform(executor = executorSet, description = 'ATLAS Validation transform. Inputs must be HITS. Outputs must be histogram files.')
addAthenaArguments(trf.parser)
addHITSValidArguments(trf.parser)
return trf
def getTransform(RAWtoALL=False):
executorSet = set()
addRecoSubsteps(executorSet)
trf = transform(
executor=executorSet,
description=
'General purpose ATLAS digitisation and reconstruction transform'
' Inputs can be HITS, RDO, BS, ESD or AOD, with outputs of RDO, ESD, AOD or DAODs.'
' See https://twiki.cern.ch/twiki/bin/view/AtlasComputing/RecoTf for more details.'
)
addAthenaArguments(trf.parser)
addDetectorArguments(trf.parser)
addTriggerArguments(trf.parser)
addAllRecoArgs(trf, RAWtoALL)
# For digi step - make sure we can add the digitisation/simulation arguments
# before we add this substep; allows Reco_tf to work without AtlasSimulation
try:
from SimuJobTransforms.simTrfArgs import addForwardDetTrfArgs, addBasicDigiArgs, addPileUpTrfArgs, addCommonSimDigTrfArgs
from SimuJobTransforms.SimTransformUtils import addDigitizationSubstep
addBasicDigiArgs(trf.parser)
addForwardDetTrfArgs(trf.parser)
addPileUpTrfArgs(trf.parser)
addCommonSimDigTrfArgs(trf.parser)
simStepSet = set()
addDigitizationSubstep(simStepSet)
trf.appendToExecutorSet(list(simStepSet)[0])
except ImportError as e:
msg.warning(
'Failed to import digitisation arguments ({0}). Digitisation substep will not be available.'
.format(e))
# Again, protect core functionality from too tight a dependence on EventOverlay
try:
from EventOverlayJobTransforms.overlayTrfArgs import addOverlayTrfArgs, addOverlayPoolTrfArgs
from EventOverlayJobTransforms.overlayTransformUtils import appendOverlay_PoolSubstep
addOverlayTrfArgs(trf.parser)
addOverlayPoolTrfArgs(trf.parser)
appendOverlay_PoolSubstep(trf, True)
except ImportError as e:
msg.warning(
'Failed to import overlay arguments ({0}). Event overlay substep will not be available.'
.format(e))
# Again, protect core functionality from too tight a dependence on PATJobTransforms
try:
from PATJobTransforms.PATTransformUtils import addPhysValidationFiles, addValidationArguments, appendPhysValidationSubstep
addPhysValidationFiles(trf.parser)
addValidationArguments(trf.parser)
appendPhysValidationSubstep(trf)
except ImportError:
msg.warning(
'Failed to import PAT arguments. Physics validation substep will not be available.'
)
return trf
def getTransform():
executorSet = set()
from EventIndexProducer.EITransformUtils import addEI_Substep, addEI_arguments
addEI_Substep(executorSet)
trf = transform(executor = executorSet, description = 'EventIndex transform. Input must be a POOL file.')
addAthenaArguments(trf.parser)
addEI_arguments(trf.parser)
return trf
def getTransform():
executorSet = set()
from EventOverlayJobTransforms.overlayTransformUtils import addOverlayBSFilterSubstep, addOverlayBSFilterArguments, addOverlayBSTrigFilterSubstep, addOverlayHITARMakerSubstep
addOverlayBSTrigFilterSubstep(executorSet)
addOverlayBSFilterSubstep(executorSet)
addOverlayHITARMakerSubstep(executorSet)
trf = transform(executor = executorSet, description = 'Filter BS data based on trigger bit')
addAthenaArguments(trf.parser)
addOverlayBSFilterArguments(trf.parser)
return trf
def getTransform():
executorSet = set()
from EventOverlayJobTransforms.overlayTransformUtils import addOverlay_PoolSubstep, addOverlay_PoolArguments
addOverlay_PoolSubstep(executorSet)
trf = transform(executor = executorSet, description = 'ATLAS Overlay transform. Inputs must be HITS. Outputs must be RDO.')
addAthenaArguments(trf.parser)
addDetectorArguments(trf.parser)
addTriggerArguments(trf.parser, addTrigFilter=False)
addOverlay_PoolArguments(trf.parser)
return trf
def getTransform():
trf = transform(executor=athenaExecutor(
name='ESDtoAOD',
skeletonFile='RecJobTransforms/skeleton.ESDtoAOD_tf.py',
substep='e2a'))
addAthenaArguments(trf.parser)
addDetectorArguments(trf.parser)
addCommonRecTrfArgs(trf.parser)
addMyArgs(trf.parser)
return trf
def getTransform():
executorSet = set()
addRecoSubsteps(executorSet)
addDigitizationSubstep(executorSet)
# Sim + Digi - factor these out into an importable function in time
executorSet.add(
athenaExecutor(
name='TRtoHITS',
skeletonFile='SimuJobTransforms/skeleton.EVGENtoHIT_ISF.py',
substep='simTRIn',
tryDropAndReload=False,
perfMonFile='ntuple.pmon.gz',
inData=['EVNT_TR'],
outData=['HITS', 'NULL']))
executorSet.add(
athenaExecutor(
name='EVNTtoHITS',
skeletonFile='SimuJobTransforms/skeleton.EVGENtoHIT_ISF.py',
substep='sim',
tryDropAndReload=False,
perfMonFile='ntuple.pmon.gz',
inData=['NULL', 'EVNT'],
outData=['EVNT_TR', 'HITS', 'NULL']))
trf = transform(
executor=executorSet,
description=
'Full chain ATLAS transform with ISF simulation, digitisation'
' and reconstruction. Inputs can be EVNT, EVNT_TR, HITS, RDO, BS, ESD or AOD, with outputs of RDO, ESD, AOD or DPDs.'
' See https://twiki.cern.ch/twiki/bin/viewauth/Atlas/FullChainTf for more details.'
)
# Common arguments
addAthenaArguments(trf.parser)
addDetectorArguments(trf.parser)
addTriggerArguments(trf.parser)
# Reconstruction arguments and outputs (use the factorised 'do it all' function)
addAllRecoArgs(trf)
# Simulation and digitisation options
addCommonSimTrfArgs(trf.parser)
addCommonSimDigTrfArgs(trf.parser)
addCosmicsTrfArgs(trf.parser)
addBasicDigiArgs(trf.parser)
addSim_tfArgs(trf.parser)
addForwardDetTrfArgs(trf.parser)
addPileUpTrfArgs(trf.parser)
addCommonSimDigTrfArgs(trf.parser)
addTrackRecordArgs(trf.parser)
return trf
def getTransform():
executor_set = set()
from OverlayConfiguration.OverlayTransformHelpers import addOverlayArguments, addOverlaySubstep
addOverlaySubstep(executor_set)
trf = transform(executor=executor_set,
description='ATLAS Overlay transform. Inputs must be HITS. Outputs must be RDO.')
addAthenaArguments(trf.parser)
addDetectorArguments(trf.parser)
addTriggerArguments(trf.parser, addTrigFilter=False)
addOverlayArguments(trf.parser)
return trf
def getTransform():
executorSet = set()
addDAODMergerSubsteps(executorSet)
trf = transform(executor=executorSet)
addAthenaArguments(trf.parser)
addDetectorArguments(trf.parser)
addCommonRecTrfArgs(trf.parser)
addDAODArguments(trf.parser)
return trf
def getTransform():
exeSet = set()
# exeSet.add(SCTCalibExecutor('/afs/cern.ch/work/c/csander/sct/testarea/AtlasOffline/athena/InnerDetector/InDetCalibAlgs/SCT_CalibAlgs/share/skeleton.sct_calib.py'))
exeSet.add(SCTCalibExecutor('/afs/cern.ch/user/s/sctcalib/testarea/latest/athena/InnerDetector/InDetCalibAlgs/SCT_CalibAlgs/share/skeleton.sct_calib.py'))
trf = transform(executor=exeSet)
addAthenaArguments(trf.parser)
addSCTCalibArgs(trf.parser)
return trf
def getTransform():
executorSet = set()
executorSet.add(hybridPOOLMergeExecutor(name = 'ESDMerge', skeletonFile = 'RecJobTransforms/skeleton.MergePool_tf.py',
inData = ['ESD'], outData = ['ESD_MRG']))
trf = transform(executor = executorSet)
addAthenaArguments(trf.parser)
addDetectorArguments(trf.parser)
addCommonRecTrfArgs(trf.parser)
addMyArgs(trf.parser)
return trf
def getTransform():
executorSet = set()
from SimuJobTransforms.SimTransformUtils import addAtlasG4Substep, addAtlasG4Arguments
addAtlasG4Substep(executorSet)
trf = transform(
executor=executorSet,
description=
'Legacy ATLAS Simulation transform. Inputs must be EVNT else a single particle Generator job options must be specified. Outputs must be HITS or TrackRecords.'
)
addAthenaArguments(trf.parser)
addDetectorArguments(trf.parser)
addAtlasG4Arguments(trf.parser)
return trf
def getTransform():
executorSet = set()
from SimuJobTransforms.SimTransformUtils import addStandardHITSMergeSubstep, addHITSMergeArguments
addStandardHITSMergeSubstep(executorSet)
trf = transform(
executor=executorSet,
description=
'HITS Merging transform. Inputs must be HITS. Outputs must be HITS_MRG (i.e. HITS). '
)
addAthenaArguments(trf.parser)
addDetectorArguments(trf.parser)
addHITSMergeArguments(trf.parser)
return trf
def getTransform():
executorSet = set()
from SimuJobTransforms.SimTransformUtils import addDigitizationSubstep, addDigitizationArguments
addDigitizationSubstep(executorSet)
trf = transform(
executor=executorSet,
description=
'ATLAS Digitization transform. Inputs must be HITS. Outputs must be RDO.'
)
addAthenaArguments(trf.parser)
addDetectorArguments(trf.parser)
addTriggerArguments(trf.parser, addTrigFilter=False)
addDigitizationArguments(trf.parser)
return trf
def getTransform():
executorSet = set()
executorSet.add(
athenaExecutor(
name='EvtGenFromEVNT',
skeletonFile='EvgenJobTransforms/skeleton.EvtGenFromEVNT.py',
inData=['EVNT'],
outData=['EVNT_MRG']))
trf = transform(executor=executorSet)
addAthenaArguments(trf.parser)
addMyArgs(trf.parser)
return trf
def getTransform():
exeSet = set()
exeSet.add(EvgenExecutor("EvgenJobTransforms/skeleton.ABtoEVGEN.py"))
exeSet.add(
athenaExecutor(name="AODtoDPD",
skeletonFile="PATJobTransforms/skeleton.AODtoDPD_tf.py",
substep="a2d",
inData=["EVNT"],
outData=["NTUP_TRUTH"],
perfMonFile="ntuple_AODtoDPD.pmon.gz"))
trf = transform(executor=exeSet)
addAthenaArguments(trf.parser)
addStdEvgenArgs(trf.parser)
return trf
def getTransform():
executorSet = set()
executorSet.add(
athenaExecutor(
name='FTKSimulationMerge',
skeletonFile='TrigFTKSim/skeleton.FTKStandaloneMerge.py',
inData=['NTUP_FTKTMP'],
disableMP=True,
outData=['NTUP_FTK', 'RDO_FTK'],
))
executorSet.add(
athenaExecutor(
name='FTKSimulationRDOMerge',
skeletonFile='TrigFTKSim/skeleton.FTKStandaloneMerge.py',
disableMP=True,
inData=[('NTUP_FTKTMP', 'RDO')],
outData=['RDO_FTK'],
))
executorSet.add(
athenaExecutor(
name='FTKRecoRDOtoESD',
skeletonFile='RecJobTransforms/skeleton.RAWtoESD.py',
substep='r2e',
inData=[('RDO', 'NTUP_FTK')],
outData=['DESD_FTK'],
perfMonFile='ntuple_RAWtoESD.pmon.gz',
))
# extraRunargs = {'preInclude': ['TrigFTKSim/FTKReco_jobOptions.py']}))
executorSet.add(
athenaExecutor(
name='FTKRecoESDtoNTUP',
skeletonFile='PyJobTransforms/skeleton.ESDtoDPD.py',
substep='e2d',
inData=['DESD_FTK'],
outData=['NTUP_TRIG'],
perfMonFile='ntuple_ESDtoDPD.pmon.gz',
))
# extraRunargs = {'preInclude': ['TrigFTKSim/FTKReco_jobOptions.py']}))
trf = transform(executor=executorSet,
description='FTK full region merge and reco.')
addAthenaArguments(trf.parser, maxEventsDefaultSubstep='all')
addDetectorArguments(trf.parser)
addCommonRecTrfArgs(trf.parser)
addFTKSimulationArgs(trf.parser)
addD3PDArguments(trf.parser, pick=['NTUP_TRIG'], transform=trf)
addBasicDigiArgs(trf.parser)
return trf
def getTransform():
executorSet = set()
print type(executorSet)
executorSet.add(
athenaExecutor(name='EVNTMerge',
skeletonFile='PyJobTransforms/skeleton.EVNTMerge.py',
inData=['EVNT'],
outData=['EVNT_MRG']))
trf = transform(executor=executorSet)
addAthenaArguments(trf.parser)
addMyArgs(trf.parser)
return trf
def get_transform():
from PyJobTransforms.transform import transform
from PyJobTransforms.trfExe import athenaExecutor
trf = transform(executor=athenaExecutor(
name='RDOtoBS',
skeletonFile='TrigSimTransforms/skeleton.RDOtoBS.py',
substep='r2b',
))
from PyJobTransforms.trfArgs import addAthenaArguments
addAthenaArguments(trf.parser)
add_RDOtoBS_args(trf.parser)
return trf
def getTransform():
executorSet = set()
executorSet.add(athenaExecutor(name = 'FTKSimulationMergeDigi',
skeletonFile = 'TrigFTKSim/skeleton.FTKStandaloneMergeDigi.py',
inData = ['NTUP_FTKTMP'],disableMP=True,
outData = ['RDO_FTK'],))
trf = transform(executor = executorSet, description = 'FTK full region merge and reco.')
addAthenaArguments(trf.parser, maxEventsDefaultSubstep='all')
addDetectorArguments(trf.parser)
addCommonRecTrfArgs(trf.parser)
addFTKSimulationArgs(trf.parser)
addD3PDArguments(trf.parser, pick=['NTUP_TRIG'], transform=trf)
addBasicDigiArgs(trf.parser)
return trf
