def test_asserts_query_multiple(self):
""" Show that setting the evidence with distinct objects yields
distinct results """
r = DataObject(key='relationship')
ar = DataObject(key='aref')
br = DataObject(key='bref')
e = self.ctx.Evidence(key="a", reference=ar)
e.supports(r)
self.save()
e1 = self.ctx.Evidence(key="b", reference=br)
e1.supports(r)
self.save()
e0 = Evidence()
e0.supports(r)
for x in e0.load():
lar = x.reference.one()
lbr = x.reference.one()
# Testing that either a has a result [email protected] and y has nothing or
# y has a result 1999 and a has nothing
if x.idl == e1.idl:
self.assertEqual(lbr, br)
elif x.idl == e.idl:
self.assertEqual(lar, ar)
else:
self.fail("Unknown object returned from load")
def test_asserts_query_multiple(self):
""" Show that setting the evidence with distinct objects yields
distinct results """
r = DataObject(key='relationship')
e = Evidence(key="a", author='*****@*****.**')
e.asserts(r)
e.save()
e1 = Evidence(key="b", year=1999)
e1.asserts(r)
e1.save()
e0 = Evidence()
e0.asserts(r)
for x in e0.load():
a = x.author.one()
y = x.year()
# Testing that either a has a result [email protected] and y has nothing or
# y has a result 1999 and a has nothing
if x.idl == e1.idl:
self.assertEqual(y, 1999)
elif x.idl == e.idl:
self.assertEqual(a, '*****@*****.**')
else:
self.fail("Unknown object returned from load")
def test_uploader(self):
""" Make sure that we're marking a statement with it's uploader """
g = make_graph(20)
r = DataObject(triples=g, conf=self.config)
r.save()
u = r.uploader()
self.assertEqual(self.config['user.email'], u)
def test_upload_date(self):
""" Make sure that we're marking a statement with it's upload date """
g = make_graph(20)
r = DataObject(triples=g)
r.save()
u = r.upload_date()
self.assertIsNotNone(u)
def test_multiple_evidence_for_single_fact(self):
"""
Can we assert the same fact with two distinct pieces of Evidence?
"""
e1 = Evidence()
e1.pmid('777')
e2 = Evidence()
e2.pmid('888')
c = DataObject(key=23)
e1.asserts(c)
e2.asserts(c)
e1.save()
e2.save()
evs = Evidence()
evs.asserts(c)
saved_pmids = set(['777', '888'])
loaded_pmids = set([x.pmid() for x in evs.load()])
self.assertTrue(saved_pmids.issubset(loaded_pmids))
def test_asserts(self):
"""
Asserting something should allow us to get it back.
"""
e = Evidence(key='WBPaper00044600')
r = DataObject(key="context_data_object")
e.supports(r)
s = list(e.supports.get())
self.assertIn(r, s)
def test_asserts_query(self):
""" Show that we can store the evidence on an object and later retrieve it """
e = self.ctx.Evidence(key="a")
r = DataObject(key="relationship")
e.supports(r)
self.save()
e0 = self.ctx.Evidence()
e0.supports(r)
s = list(e0.load())
self.assertIn(e, s)
def test_asserts(self):
"""
Asserting something should allow us to get it back.
"""
e = Evidence(key='WBPaper00044600', wormbase='WBPaper00044600')
r = DataObject(key="relationship")
e.asserts(r)
e.save()
l = list(e.asserts())
self.assertIn(r, l)
def test_asserts_query(self):
""" Show that we can store the evidence on an object and later retrieve it """
e = Evidence(key="a", author='*****@*****.**')
r = DataObject(key="relationship")
e.asserts(r)
e.save()
e0 = Evidence()
e0.asserts(r)
s = list(e0.load())
author = s[0].author.one()
self.assertIn('*****@*****.**', author)
def setUp(self):
super(Issue211EvidenceTest, self).setUp()
self.e1 = self.ctx.Evidence()
self.e2 = self.ctx.Evidence()
c = DataObject(key=23)
self.e1.supports(c)
self.e2.supports(c)
self.evs = self.context.stored(Evidence)()
self.evs.supports(c)
self.expected_ids = set(['777', '888'])
def test_asserts_query_multiple_author_matches(self):
""" Show that setting the evidence with distinct objects yields
distinct results even if there are matching values """
e = Evidence(key="k", author='*****@*****.**')
r = DataObject(key="a_statement")
e.asserts(r)
e.save()
e1 = Evidence(key="j", author='*****@*****.**')
e1.asserts(r)
e1.save()
e0 = Evidence()
e0.asserts(r)
self.assertEqual(2, len(list(e0.load())))
def test_evidence_retrieves_instead_of_overwrites(self):
"""
Test that creating a new Evidence with the same attributes of an
already-saved Evidence does not overwrite the previous Evidence,
but instead retrieves it.
"""
e = Evidence(key="NBK",
author='Rodney Dangerfield',
title="Natural Born Killers")
r = DataObject(key='Dangerfields_dramatic_range')
e.asserts(r)
e.save()
e1 = Evidence(author='Rodney Dangerfield')
facts = list(e1.asserts())
self.assertIn(r, facts)
def test_context_setter(self):
a = DataObject()
a.context = 42
self.assertEquals(a.context, 42)
def test_repr(self):
self.assertRegexpMatches(
repr(DataObject(ident="http://example.com")),
r"DataObject\(ident=rdflib\.term\.URIRef\("
r"u?[\"']http://example.com[\"']\)\)")
def test_identifier(self):
""" Test that we can set and return an identifier """
do = DataObject(ident="http://example.org")
self.assertEqual(do.identifier, R.URIRef("http://example.org"))
def test_context_getter(self):
a = DataObject()
self.assertIsNone(a.context)
def test_rdfs_comment_property(self):
a = DataObject(rdfs_comment='Hello')
self.assertIn('Hello', a.rdfs_comment())
def assertEvidences(self, prop):
self.e1.reference(DataObject(ident='777'))
self.e2.reference(DataObject(ident='888'))
self.save()
loaded_ids = set(str(x.identifier) for x in self.evs.reference.get())
self.assertTrue(self.expected_ids.issubset(loaded_ids))
def test_DataUser(self):
do = DataObject()
self.assertTrue(isinstance(do, DataUser))