def test_asserts_query_multiple(self):
""" Show that setting the evidence with distinct objects yields
distinct results """
r = DataObject(key='relationship')
e = Evidence(key="a", author='*****@*****.**')
e.asserts(r)
e.save()
e1 = Evidence(key="b", year=1999)
e1.asserts(r)
e1.save()
e0 = Evidence()
e0.asserts(r)
for x in e0.load():
a = x.author.one()
y = x.year()
# Testing that either a has a result [email protected] and y has nothing or
# y has a result 1999 and a has nothing
if x.idl == e1.idl:
self.assertEqual(y, 1999)
elif x.idl == e.idl:
self.assertEqual(a, '*****@*****.**')
else:
self.fail("Unknown object returned from load")
def test_multiple_evidence_for_single_fact(self):
"""
Can we assert the same fact with two distinct pieces of Evidence?
"""
e1 = Evidence()
e1.pmid('777')
e2 = Evidence()
e2.pmid('888')
c = DataObject(key=23)
e1.asserts(c)
e2.asserts(c)
e1.save()
e2.save()
evs = Evidence()
evs.asserts(c)
saved_pmids = set(['777', '888'])
loaded_pmids = set([x.pmid() for x in evs.load()])
self.assertTrue(saved_pmids.issubset(loaded_pmids))
def test_multiple_evidence_for_single_fact(self):
"""
Can we assert the same fact with two distinct pieces of Evidence?
"""
e1 = Evidence()
e1.pmid('777')
e2 = Evidence()
e2.pmid('888')
c = DataObject(key=23)
e1.asserts(c)
e2.asserts(c)
e1.save()
e2.save()
evs = Evidence()
evs.asserts(c)
saved_pmids = set(['777', '888'])
loaded_pmids = set([x.pmid() for x in evs.load()])
self.assertTrue(saved_pmids.issubset(loaded_pmids))
def test_asserts_query_multiple(self):
""" Show that setting the evidence with distinct objects yields
distinct results """
r = DataObject(key='relationship')
e = Evidence(key="a", author='*****@*****.**')
e.asserts(r)
e.save()
e1 = Evidence(key="b", year=1999)
e1.asserts(r)
e1.save()
e0 = Evidence()
e0.asserts(r)
for x in e0.load():
a = x.author.one()
y = x.year()
# Testing that either a has a result [email protected] and y has nothing or
# y has a result 1999 and a has nothing
if x.idl == e1.idl:
self.assertEqual(y, 1999)
elif x.idl == e.idl:
self.assertEqual(a, '*****@*****.**')
else:
self.fail("Unknown object returned from load")
def test_evidence_asserts_all_about(self):
""" Test that we can assert_all_about a containing object and
then get evidence for contained objects.
"""
import random
random.seed()
v = values('all')
def make_syn():
import struct
u = struct.pack("=2f", random.random(), random.random())
z = struct.pack("=2f", random.random(), random.random())
a = Neuron(u.encode('hex'))
b = Neuron(z.encode('hex'))
v.value(a.neighbor(b))
return (a, b)
for x in range(200):
make_syn()
# the one we'll check for
a, b = make_syn()
ev = Evidence(author="Homer")
ev.asserts_all_about(ev)
ev.save()
eve = Evidence()
eve.asserts(a.neighbor(b))
def test_evidence_asserts_all_about(self):
""" Test that we can assert_all_about a containing object and
then get evidence for contained objects.
"""
import random
random.seed()
v = values('all')
def make_syn():
import struct
u = struct.pack("=2f", random.random(), random.random())
z = struct.pack("=2f", random.random(), random.random())
a = Neuron(u.encode('hex'))
b = Neuron(z.encode('hex'))
v.value(a.neighbor(b))
return (a, b)
for x in range(200):
make_syn()
# the one we'll check for
a, b = make_syn()
ev = Evidence(author="Homer")
ev.asserts_all_about(ev)
ev.save()
eve = Evidence()
eve.asserts(a.neighbor(b))
def test_asserts(self):
"""
Asserting something should allow us to get it back.
"""
e = Evidence(key='WBPaper00044600', wormbase='WBPaper00044600')
r = DataObject(key="relationship")
e.asserts(r)
e.save()
l = list(e.asserts())
self.assertIn(r, l)
def test_asserts(self):
"""
Asserting something should allow us to get it back.
"""
e = Evidence(key='WBPaper00044600', wormbase='WBPaper00044600')
r = DataObject(key="relationship")
e.asserts(r)
e.save()
l = list(e.asserts())
self.assertIn(r, l)
def test_asserts_query(self):
""" Show that we can store the evidence on an object and later retrieve it """
e = Evidence(key="a", author='*****@*****.**')
r = DataObject(key="relationship")
e.asserts(r)
e.save()
e0 = Evidence()
e0.asserts(r)
s = list(e0.load())
author = s[0].author.one()
self.assertIn('*****@*****.**', author)
def test_asserts_query(self):
""" Show that we can store the evidence on an object and later retrieve it """
e = Evidence(key="a", author='*****@*****.**')
r = DataObject(key="relationship")
e.asserts(r)
e.save()
e0 = Evidence()
e0.asserts(r)
s = list(e0.load())
author = s[0].author.one()
self.assertIn('*****@*****.**', author)
def test_evidence_retrieves_instead_of_overwrites(self):
"""
Test that creating a new Evidence with the same attributes of an
already-saved Evidence does not overwrite the previous Evidence,
but instead retrieves it.
"""
e = Evidence(key="NBK", author='Rodney Dangerfield', title="Natural Born Killers")
r = DataObject(key='Dangerfields_dramatic_range')
e.asserts(r)
e.save()
e1 = Evidence(author='Rodney Dangerfield')
facts = list(e1.asserts())
self.assertIn(r, facts)
def test_asserts_query_multiple_author_matches(self):
""" Show that setting the evidence with distinct objects yields
distinct results even if there are matching values """
e = Evidence(key="k", author='*****@*****.**')
r = DataObject(key="a_statement")
e.asserts(r)
e.save()
e1 = Evidence(key="j", author='*****@*****.**')
e1.asserts(r)
e1.save()
e0 = Evidence()
e0.asserts(r)
self.assertEqual(2, len(list(e0.load())))
def test_asserts_query_multiple_author_matches(self):
""" Show that setting the evidence with distinct objects yields
distinct results even if there are matching values """
e = Evidence(key="k", author='*****@*****.**')
r = DataObject(key="a_statement")
e.asserts(r)
e.save()
e1 = Evidence(key="j", author='*****@*****.**')
e1.asserts(r)
e1.save()
e0 = Evidence()
e0.asserts(r)
self.assertEqual(2, len(list(e0.load())))
def test_evidence_retrieves_instead_of_overwrites(self):
"""
Test that creating a new Evidence with the same attributes of an
already-saved Evidence does not overwrite the previous Evidence,
but instead retrieves it.
"""
e = Evidence(key="NBK",
author='Rodney Dangerfield',
title="Natural Born Killers")
r = DataObject(key='Dangerfields_dramatic_range')
e.asserts(r)
e.save()
e1 = Evidence(author='Rodney Dangerfield')
facts = list(e1.asserts())
self.assertIn(r, facts)
def test_2(self):
# Reference two neurons
n1 = Neuron(name='AVAL')
n2 = Neuron(name='PVCR')
# Declare a connection between them
c = Connection(n1, n2, number=1)
c_id = c.identifier
# Attach some evidence for the connection
e = Evidence(author="Danny Glover")
e.asserts(c)
# look at what else this evidence has stated
e.save()
e = Evidence(author="Danny Glover")
r = e.asserts()
ids = set(x.identifier for x in r)
self.assertIn(c_id, ids)
def test_2(self):
# Reference two neurons
n1 = Neuron(name='AVAL')
n2 = Neuron(name='PVCR')
# Declare a connection between them
c = Connection(n1, n2, number=1)
c_id = c.identifier
# Attach some evidence for the connection
e = Evidence(author="Danny Glover")
e.asserts(c)
# look at what else this evidence has stated
e.save()
e = Evidence(author="Danny Glover")
r = e.asserts()
ids = set(x.identifier for x in r)
self.assertIn(c_id, ids)