def get_module_frame(frame: QFrame, model: Model, value: FileWriterModule,
use_simple_tree_view: bool):
if use_simple_tree_view:
module_frame = ModuleView(value, frame)
else:
module_frame = ModuleViewEditable(value, frame, model)
frame.module_frame = module_frame
frame.layout().addWidget(frame.module_frame)
if (isinstance(module_frame, ModuleViewEditable)
and isinstance(value, Dataset)
and value.name in EXCLUDED_PIXEL_GRID):
frame.setEnabled(False)
class PageAbout(QWidget):
def __init__(self, parent=None):
QWidget.__init__(self)
parent.addWidget(self)
self.gridLayout_about = QGridLayout(self)
self.frame_about = QFrame(self)
self.frame_about.setEnabled(True)
self.frame_about.setStyleSheet(styles.frame_about)
self.frame_about.setFrameShape(QFrame.StyledPanel)
self.frame_about.setFrameShadow(QFrame.Raised)
self.gridLayout_about.addWidget(self.frame_about, 0, 1, 1, 1)
self.gridLayout_frame_about = QGridLayout(self.frame_about)
self.gridLayout_frame_about.setContentsMargins(-1, 60, -1, -1)
self.spacer_about_l = QSpacerItem(40, 20, QSizePolicy.Expanding,
QSizePolicy.Minimum)
self.spacer_about_r = QSpacerItem(40, 20, QSizePolicy.Expanding,
QSizePolicy.Minimum)
self.spacer_about_b = QSpacerItem(20, 40, QSizePolicy.Minimum,
QSizePolicy.Expanding)
self.gridLayout_frame_about.addItem(self.spacer_about_l, 0, 0, 1, 1)
self.gridLayout_frame_about.addItem(self.spacer_about_r, 0, 2, 1, 1)
self.gridLayout_frame_about.addItem(self.spacer_about_b, 3, 1, 1, 1)
self.label_about_name = QLabel("WebCheck", self.frame_about)
self.label_about_name.setStyleSheet(styles.label_about_name)
self.label_about_name.setAlignment(Qt.AlignCenter)
self.gridLayout_frame_about.addWidget(self.label_about_name, 0, 1, 1,
1)
self.label_about_name = QLabel(
"Made by Eugene Oros & Michał Piotrowski", self.frame_about)
self.label_about_name.setStyleSheet(styles.label_about_made)
self.label_about_name.setAlignment(Qt.AlignCenter)
self.gridLayout_frame_about.addWidget(self.label_about_name, 1, 1, 1,
1)
self.label_about_version = QLabel("Version 1.0.0", self.frame_about)
self.label_about_version.setStyleSheet(styles.label_about_version)
self.label_about_version.setAlignment(Qt.AlignCenter)
self.gridLayout_frame_about.addWidget(self.label_about_version, 2, 0,
1, 3)
self.label_about_c = QLabel("\u00a9 All rights reserved",
self.frame_about)
self.label_about_c.setStyleSheet(styles.label_about_c)
self.label_about_c.setAlignment(Qt.AlignCenter)
self.gridLayout_frame_about.addWidget(self.label_about_c, 3, 0, 1, 3)
class DataBrowserMain(QWidget):
sliceUpdated = Signal(int, int, int, int)
def __init__(self, parent):
super(DataBrowserMain, self).__init__(parent)
# data import
self.brkraw_obj = self.parent().brkraw_obj
self.selectedScan = None
self.selectedScanTR = None
self.set_viewer_frame()
self.set_controller_frame()
self.set_gridlayouts()
self.set_font()
# self.set_palette() # TODO
self.set_size()
self.set_objectnames()
self.set_texts()
self.ratio_container = []
self.init_connection()
self.inactivate_widgets() # Inactivate during startup
def init_connection(self):
self.parent().dataSelected.connect(
self.selectScanEvent) # run selectScanEvent when data selected
self.event_timer = QTimer()
self.event_timer.timeout.connect(self.sliceUpdateEvent) #
self.sliceUpdated.connect(self.updateImage)
self.xaxis_slider.valueChanged.connect(self.xaxis_spinbox.setValue)
self.xaxis_spinbox.valueChanged.connect(self.xaxis_slider.setValue)
self.yaxis_slider.valueChanged.connect(self.yaxis_spinbox.setValue)
self.yaxis_spinbox.valueChanged.connect(self.yaxis_slider.setValue)
self.zaxis_slider.valueChanged.connect(self.zaxis_spinbox.setValue)
self.zaxis_spinbox.valueChanged.connect(self.zaxis_slider.setValue)
self.frame_slider.valueChanged.connect(self.frame_spinbox.setValue)
self.frame_spinbox.valueChanged.connect(self.frame_slider.setValue)
self.axial_view.pointed.connect(self.axialview_pointing_event)
self.sagittal_view.pointed.connect(self.sagittalview_pointing_event)
self.coronal_view.pointed.connect(self.coronalview_pointing_event)
self.connect_sliders_to_update()
def sagittalview_pointing_event(self, pos_x, pos_y, meta):
max_x = self.yaxis_slider.maximum()
max_y = self.zaxis_slider.maximum()
# print(pos_x, pos_y, max_x, max_y)
self.yaxis_slider.setValue(int(max_x * pos_x))
self.zaxis_slider.setValue(max_y - int(max_y * pos_y))
# print(int(max_x * pos_x), int(max_y * pos_y))
def axialview_pointing_event(self, pos_x, pos_y, meta):
max_x = self.yaxis_slider.maximum()
max_y = self.xaxis_slider.maximum()
# print(pos_x, pos_y, max_x, max_y)
self.yaxis_slider.setValue(int(max_x * pos_x))
self.xaxis_slider.setValue(int(max_y * pos_y))
# print(int(max_x * pos_x), int(max_y * pos_y))
def coronalview_pointing_event(self, pos_x, pos_y, meta):
max_x = self.xaxis_slider.maximum()
max_y = self.zaxis_slider.maximum()
# print(pos_x, pos_y, max_x, max_y)
self.xaxis_slider.setValue(int(max_x * pos_x))
self.zaxis_slider.setValue(max_y - int(max_y * pos_y))
# print(int(max_x * pos_x), int(max_y * pos_y))
def sliderChangeEvent(self):
self.event_timer.start(10)
def sliceUpdateEvent(self):
# This will executed only when timer timeout
x = self.xaxis_slider.value()
y = self.yaxis_slider.value()
z = self.zaxis_slider.value()
t = self.frame_slider.value()
self.sliceUpdated.emit(x, y, z, t)
self.event_timer.stop()
@staticmethod
def slice_data(dataobj, slice_orient, slice_num):
if slice_orient == 'axial':
sliced_data = dataobj[:, :, slice_num]
elif slice_orient == 'sagittal':
sliced_data = dataobj[:, slice_num, ::-1]
elif slice_orient == 'coronal':
sliced_data = dataobj[slice_num, :, ::-1]
else:
popup_error_dialog(UnexpectedError.message)
return None
return sliced_data
def updateImage(self, x, y, z, frame):
if len(self.selectedScan.shape) == 4:
dataobj = self.selectedScan[:, :, :, frame]
else:
dataobj = self.selectedScan[...]
data_xy = self.slice_data(dataobj, 'axial', z)
data_yz = self.slice_data(dataobj, 'sagittal', x)
data_xz = self.slice_data(dataobj, 'coronal', y)
ratio_xy, ratio_yz, ratio_xz = self.ratio_container
# ratio_xy, ratio_yz, ratio_xz = 1, 1, 1
qm_xy = convert_arr2qpixmap(data_xy, ratio_xy)
qm_yz = convert_arr2qpixmap(data_yz, ratio_yz)
qm_xz = convert_arr2qpixmap(data_xz, ratio_xz)
self.axial_view.setPixmap(qm_xy)
self.sagittal_view.setPixmap(qm_yz)
self.coronal_view.setPixmap(qm_xz)
def selectScanEvent(self, delivery_package: list):
""" this event is occurring when a scan selected on scanlist """
self.axial_view.setEnabled(True)
self.sagittal_view.setEnabled(True)
self.coronal_view.setEnabled(True)
self.selectedScan, affine, resol, self.selectedScanTR, is_localizer = delivery_package
self.selectedScanTR /= 1000
from slfmri.imgman import reorient_to_ras, determine_slice_plane
slice_plane_ref = dict(sagittal=0, coronal=1, axial=2)
if is_localizer:
img_container = dict()
for i, aff in enumerate(affine):
size = config.get('ImageViewer', 'size')
data = self.selectedScan[..., i]
slice_plane = determine_slice_plane(2, aff, resol)
ras_data, ras_resol = reorient_to_ras(data[:, :, np.newaxis],
aff, resol)
slice_axis = slice_plane_ref[slice_plane]
ras_data = ras_data.mean(slice_axis)
ras_resol = np.delete(ras_resol, slice_axis)
qpixmap = convert_arr2qpixmap(ras_data, ras_resol, size)
img_container[slice_plane] = qpixmap
self.update_axisview(img_container)
else:
# other than localizer
self.init_data(self.selectedScan)
matrix_size = np.asarray(self.selectedScan.shape)
resol = np.asarray(resol)
fov = matrix_size[:3] * resol
self.ratio_container = [
fov[0] / fov[1], fov[1] / fov[2], fov[0] / fov[2]
]
# reset value
init_x, init_y, init_z = (np.asarray(self.selectedScan.shape[:3]) /
2.0).astype(int)
init_f = 0
self.disconnect_sliders_to_update()
self.xaxis_slider.setValue(init_x)
self.yaxis_slider.setValue(init_y)
self.zaxis_slider.setValue(init_z)
self.frame_slider.setValue(init_f)
self.connect_sliders_to_update()
self.updateImage(init_x, init_y, init_z, init_f)
def connect_sliders_to_update(self):
# connect to check slice update
self.xaxis_slider.valueChanged.connect(self.sliderChangeEvent)
self.yaxis_slider.valueChanged.connect(self.sliderChangeEvent)
self.zaxis_slider.valueChanged.connect(self.sliderChangeEvent)
self.frame_slider.valueChanged.connect(self.sliderChangeEvent)
def disconnect_sliders_to_update(self):
# disconnect to check slice update
self.xaxis_slider.valueChanged.disconnect(self.sliderChangeEvent)
self.yaxis_slider.valueChanged.disconnect(self.sliderChangeEvent)
self.zaxis_slider.valueChanged.disconnect(self.sliderChangeEvent)
self.frame_slider.valueChanged.disconnect(self.sliderChangeEvent)
def init_data(self, dataobj):
self.slicecontrol_pane.setEnabled(True)
dim = len(dataobj.shape)
if dim == 3:
size_x, size_y, size_z = dataobj.shape
size_frame = None
elif dim == 4:
size_x, size_y, size_z, size_frame = dataobj.shape
else:
popup_error_dialog(UnexpectedError.message)
return None
# init sliders and spinboxes
self.xaxis_slider.setRange(0, size_x - 1)
self.yaxis_slider.setRange(0, size_y - 1)
self.zaxis_slider.setRange(0, size_z - 1)
self.xaxis_spinbox.setRange(0, size_x - 1)
self.yaxis_spinbox.setRange(0, size_y - 1)
self.zaxis_spinbox.setRange(0, size_z - 1)
if dim == 3:
self.frame_label.setDisabled(True)
self.frame_slider.setDisabled(True)
self.frame_spinbox.setDisabled(True)
else:
self.frame_label.setEnabled(True)
self.frame_slider.setEnabled(True)
self.frame_spinbox.setEnabled(True)
self.frame_slider.setRange(0, size_frame - 1)
self.frame_spinbox.setRange(0, size_frame - 1)
def update_axisview(self, img_container: dict):
for view_plane, pixmap in img_container.items():
if view_plane == 'axial':
self.axial_view.setPixmap(pixmap)
elif view_plane == 'sagittal':
self.sagittal_view.setPixmap(pixmap)
else:
self.coronal_view.setPixmap(pixmap)
def inactivate_widgets(self):
self.slicecontrol_pane.setDisabled(True)
self.graph_frame.setDisabled(True)
def set_navigationmode(self):
# mouse click will navigate slice.
pass
def set_drawingmode(self):
# roi drawing function
pass
def mask_data_handler(self):
# mask later handler
pass
def slider_event_related(self):
# slider for slicing.
pass
def set_viewer_frame(self):
self.imageframe = QFrame(self)
self.axial_view = SliceViewer(self.imageframe)
self.axial_view.setDisabled(True)
self.sagittal_view = SliceViewer(self.imageframe)
self.sagittal_view.setDisabled(True)
self.coronal_view = SliceViewer(self.imageframe)
self.coronal_view.setDisabled(True)
# TODO: Will reactivate these on later version
# self.axial_title = QLabel(self.imageframe)
# self.coronal_title = QLabel(self.imageframe)
# self.sagittal_title = QLabel(self.imageframe)
#
# self.axialL_label = QLabel(self.imageframe)
# self.axialA_label = QLabel(self.imageframe)
# self.axialR_label = QLabel(self.imageframe)
# self.axialP_label = QLabel(self.imageframe)
#
# self.sagittalS_label = QLabel(self.imageframe)
# self.sagittalA_label = QLabel(self.imageframe)
# self.sagittalI_label = QLabel(self.imageframe)
# self.sagittalP_label = QLabel(self.imageframe)
#
# self.coronalL_label = QLabel(self.imageframe)
# self.coronalS_label = QLabel(self.imageframe)
# self.coronalR_label = QLabel(self.imageframe)
# self.coronalI_label = QLabel(self.imageframe)
#
# self.axial_title.setTextFormat(Qt.MarkdownText)
# self.axialL_label.setTextFormat(Qt.MarkdownText)
# self.axialA_label.setTextFormat(Qt.MarkdownText)
# self.axialR_label.setTextFormat(Qt.MarkdownText)
# self.axialP_label.setTextFormat(Qt.MarkdownText)
#
# self.sagittal_title.setTextFormat(Qt.MarkdownText)
# self.sagittalS_label.setTextFormat(Qt.MarkdownText)
# self.sagittalA_label.setTextFormat(Qt.MarkdownText)
# self.sagittalI_label.setTextFormat(Qt.MarkdownText)
# self.sagittalP_label.setTextFormat(Qt.MarkdownText)
#
# self.coronal_title.setTextFormat(Qt.MarkdownText)
# self.coronalL_label.setTextFormat(Qt.MarkdownText)
# self.coronalS_label.setTextFormat(Qt.MarkdownText)
# self.coronalR_label.setTextFormat(Qt.MarkdownText)
# self.coronalI_label.setTextFormat(Qt.MarkdownText)
#
# self.axial_title.setAlignment(Qt.AlignCenter)
# self.axialL_label.setAlignment(Qt.AlignRight | Qt.AlignTrailing | Qt.AlignVCenter)
# self.axialA_label.setAlignment(Qt.AlignBottom | Qt.AlignHCenter)
# self.axialR_label.setAlignment(Qt.AlignLeading | Qt.AlignLeft | Qt.AlignVCenter)
# self.axialP_label.setAlignment(Qt.AlignHCenter | Qt.AlignTop)
#
# self.sagittal_title.setAlignment(Qt.AlignCenter)
# self.sagittalS_label.setAlignment(Qt.AlignRight | Qt.AlignTrailing | Qt.AlignVCenter)
# self.sagittalA_label.setAlignment(Qt.AlignBottom | Qt.AlignHCenter)
# self.sagittalI_label.setAlignment(Qt.AlignLeading | Qt.AlignLeft | Qt.AlignVCenter)
# self.sagittalP_label.setAlignment(Qt.AlignHCenter | Qt.AlignTop)
#
# self.coronal_title.setAlignment(Qt.AlignCenter)
# self.coronalL_label.setAlignment(Qt.AlignRight | Qt.AlignTrailing | Qt.AlignVCenter)
# self.coronalS_label.setAlignment(Qt.AlignBottom | Qt.AlignHCenter)
# self.coronalR_label.setAlignment(Qt.AlignLeading | Qt.AlignLeft | Qt.AlignVCenter)
# self.coronalI_label.setAlignment(Qt.AlignHCenter | Qt.AlignTop)
def set_controller_frame(self):
self.controller_frame = QFrame(self)
self.slicecontrol_pane = QGroupBox(self.controller_frame)
self.frame_spinbox = QSpinBox(self.slicecontrol_pane)
self.xaxis_label = QLabel(self.slicecontrol_pane)
self.yaxis_label = QLabel(self.slicecontrol_pane)
self.zaxis_label = QLabel(self.slicecontrol_pane)
self.frame_label = QLabel(self.slicecontrol_pane)
self.xaxis_slider = QSlider(self.slicecontrol_pane)
self.yaxis_slider = QSlider(self.slicecontrol_pane)
self.zaxis_slider = QSlider(self.slicecontrol_pane)
self.frame_slider = QSlider(self.slicecontrol_pane)
self.xaxis_spinbox = QSpinBox(self.slicecontrol_pane)
self.yaxis_spinbox = QSpinBox(self.slicecontrol_pane)
self.zaxis_spinbox = QSpinBox(self.slicecontrol_pane)
self.graph_frame = QFrame(self)
self.graph_view = pg.PlotWidget(self.graph_frame)
self.graph_view.setBackground('w')
# TODO: Will reactivate these on later version
# self.graph_view = QGraphicsView(self.graph_frame)
# self.graphcontrol_pane = QGroupBox(self.graph_frame)
# self.addmask_button = QPushButton(self.graphcontrol_pane)
# self.removemask_button = QPushButton(self.graphcontrol_pane)
# self.mask_listview = QListView(self.graphcontrol_pane)
# self.savepng_button = QPushButton(self.graphcontrol_pane)
# self.savecsv_button = QPushButton(self.graphcontrol_pane)
self.axial_view.setAlignment(Qt.AlignHCenter | Qt.AlignVCenter)
self.sagittal_view.setAlignment(Qt.AlignHCenter | Qt.AlignVCenter)
self.coronal_view.setAlignment(Qt.AlignHCenter | Qt.AlignVCenter)
self.xaxis_slider.setOrientation(Qt.Horizontal)
self.yaxis_slider.setOrientation(Qt.Horizontal)
self.zaxis_slider.setOrientation(Qt.Horizontal)
self.frame_slider.setOrientation(Qt.Horizontal)
self.slicecontrol_pane.setAlignment(Qt.AlignCenter)
self.xaxis_label.setAlignment(Qt.AlignCenter)
self.yaxis_label.setAlignment(Qt.AlignCenter)
self.zaxis_label.setAlignment(Qt.AlignCenter)
self.frame_label.setAlignment(Qt.AlignCenter)
# TODO: Will reactivate these on later version
# self.graphcontrol_pane.setAlignment(Qt.AlignCenter)
def set_size(self):
size = int(config.get('ImageViewer', 'size'))
self.imageframe.setLineWidth(0)
self.axial_view.setMinimumSize(QSize(size, size))
self.axial_view.setMaximumSize(QSize(size, size))
self.axial_view.setLineWidth(0)
self.sagittal_view.setMinimumSize(QSize(size, size))
self.sagittal_view.setMaximumSize(QSize(size, size))
self.sagittal_view.setLineWidth(0)
self.coronal_view.setMinimumSize(QSize(size, size))
self.coronal_view.setMaximumSize(QSize(size, size))
self.coronal_view.setLineWidth(0)
# TODO: Will reactivate these on later version
# self.axialL_label.setMinimumSize(QSize(20, 0))
# self.axialA_label.setMinimumSize(QSize(0, 20))
# self.axialR_label.setMinimumSize(QSize(20, 0))
# self.axialP_label.setMinimumSize(QSize(0, 20))
# self.sagittalS_label.setMinimumSize(QSize(20, 0))
# self.sagittalA_label.setMinimumSize(QSize(0, 20))
# self.sagittalI_label.setMinimumSize(QSize(20, 0))
# self.sagittalP_label.setMinimumSize(QSize(0, 20))
# self.coronalL_label.setMinimumSize(QSize(20, 0))
# self.coronalS_label.setMinimumSize(QSize(0, 20))
# self.coronalR_label.setMinimumSize(QSize(20, 0))
# self.coronalI_label.setMinimumSize(QSize(0, 20))
self.controller_frame.setMinimumSize(QSize(300, 300))
self.controller_frame.setMaximumSize(QSize(400, 300))
self.graph_frame.setMinimumSize(QSize(0, 300))
self.graph_frame.setMaximumSize(QSize(4000, 4000))
self.graph_view.setMaximumSize(QSize(4000, 600))
# TODO: Will reactivate these on later version
# self.graphcontrol_pane.setMinimumSize(QSize(300, 0))
# self.graphcontrol_pane.setMaximumSize(QSize(300, 4000))
# self.addmask_button.setMinimumSize(QSize(30, 0))
# self.addmask_button.setMaximumSize(QSize(30, 4000))
# self.removemask_button.setMinimumSize(QSize(30, 0))
# self.removemask_button.setMaximumSize(QSize(30, 4000))
def set_font(self):
self.arial_8 = QFont()
self.arial_8.setFamily(u"Arial")
self.arial_8.setPointSize(8)
self.setFont(self.arial_8)
# TODO: Will reactivate these on later version
# self.axial_title.setFont(self.arial_8)
# self.coronal_title.setFont(self.arial_8)
# self.sagittal_title.setFont(self.arial_8)
# self.axialL_label.setFont(self.arial_8)
# self.axialA_label.setFont(self.arial_8)
# self.axialR_label.setFont(self.arial_8)
# self.axialP_label.setFont(self.arial_8)
# self.sagittalS_label.setFont(self.arial_8)
# self.sagittalA_label.setFont(self.arial_8)
# self.sagittalI_label.setFont(self.arial_8)
# self.sagittalP_label.setFont(self.arial_8)
# self.coronalL_label.setFont(self.arial_8)
# self.coronalS_label.setFont(self.arial_8)
# self.coronalR_label.setFont(self.arial_8)
# self.coronalI_label.setFont(self.arial_8)
self.slicecontrol_pane.setFont(self.arial_8)
# TODO: Will reactivate these on later version
# self.xaxis_label.setFont(self.arial_8)
# self.yaxis_label.setFont(self.arial_8)
# self.zaxis_label.setFont(self.arial_8)
# self.frame_label.setFont(self.arial_8)
# self.graphcontrol_pane.setFont(self.arial_8)
# self.addmask_button.setFont(self.arial_8)
# self.removemask_button.setFont(self.arial_8)
# self.savepng_button.setFont(self.arial_8)
# self.savecsv_button.setFont(self.arial_8)
def set_palette(self):
# Brush
gray_text = QBrush(QColor(171, 171, 171, 255))
gray_text.setStyle(Qt.SolidPattern)
black_background = QBrush(QColor(0, 0, 0, 255))
black_background.setStyle(Qt.SolidPattern)
self.orientation_label_palette = QPalette()
self.orientation_label_palette.setBrush(QPalette.Active,
QPalette.WindowText, gray_text)
self.orientation_label_palette.setBrush(QPalette.Inactive,
QPalette.WindowText, gray_text)
self.orientation_label_palette.setBrush(QPalette.Disabled,
QPalette.WindowText, gray_text)
self.ortho_viewer_palette = QPalette()
self.ortho_viewer_palette.setBrush(QPalette.Active, QPalette.Base,
black_background)
self.ortho_viewer_palette.setBrush(QPalette.Inactive, QPalette.Base,
black_background)
self.ortho_viewer_palette.setBrush(QPalette.Disabled, QPalette.Base,
black_background)
self.axialA_label.setPalette(self.orientation_label_palette)
self.axialL_label.setPalette(self.orientation_label_palette)
self.axialR_label.setPalette(self.orientation_label_palette)
self.axialP_label.setPalette(self.orientation_label_palette)
self.axial_view.setPalette(self.ortho_viewer_palette)
self.sagittalS_label.setPalette(self.orientation_label_palette)
self.sagittalA_label.setPalette(self.orientation_label_palette)
self.sagittalI_label.setPalette(self.orientation_label_palette)
self.sagittalP_label.setPalette(self.orientation_label_palette)
self.sagittal_view.setPalette(self.ortho_viewer_palette)
self.coronalL_label.setPalette(self.orientation_label_palette)
self.coronalS_label.setPalette(self.orientation_label_palette)
self.coronalR_label.setPalette(self.orientation_label_palette)
self.coronalI_label.setPalette(self.orientation_label_palette)
self.coronal_view.setPalette(self.ortho_viewer_palette)
def set_gridlayouts(self):
self.axial_gridLayout = QGridLayout()
self.coronal_gridLayout = QGridLayout()
self.sagittal_gridLayout = QGridLayout()
self.imagecont_gridLayout = QGridLayout(self.slicecontrol_pane)
self.imageframe_gridLayout = QGridLayout(self.imageframe)
# self.graphcontrol_gridLayout = QGridLayout(self.graphcontrol_pane)
self.verticalLayout = QVBoxLayout(self.controller_frame)
self.horizontalLayout = QHBoxLayout(self.graph_frame)
self.main_gridLayout = QGridLayout(self)
# TODO: Will reactivate these on later version
# self.imageframe_gridLayout.addWidget(self.axial_title, 0, 1, 1, 1)
# self.imageframe_gridLayout.addWidget(self.coronal_title, 0, 2, 1, 1)
# self.imageframe_gridLayout.addWidget(self.sagittal_title, 0, 0, 1, 1)
# self.axial_gridLayout.addWidget(self.axialL_label, 1, 0, 1, 1)
# self.axial_gridLayout.addWidget(self.axialA_label, 0, 1, 1, 1)
# self.axial_gridLayout.addWidget(self.axialR_label, 1, 2, 1, 1)
# self.axial_gridLayout.addWidget(self.axialP_label, 2, 1, 1, 1)
self.axial_gridLayout.addWidget(self.axial_view, 1, 1, 1, 1)
# self.sagittal_gridLayout.addWidget(self.sagittalS_label, 1, 0, 1, 1)
# self.sagittal_gridLayout.addWidget(self.sagittalA_label, 0, 1, 1, 1)
# self.sagittal_gridLayout.addWidget(self.sagittalI_label, 1, 2, 1, 1)
# self.sagittal_gridLayout.addWidget(self.sagittalP_label, 2, 1, 1, 1)
self.sagittal_gridLayout.addWidget(self.sagittal_view, 1, 1, 1, 1)
# self.coronal_gridLayout.addWidget(self.coronalL_label, 1, 0, 1, 1)
# self.coronal_gridLayout.addWidget(self.coronalS_label, 0, 1, 1, 1)
# self.coronal_gridLayout.addWidget(self.coronalR_label, 1, 2, 1, 1)
# self.coronal_gridLayout.addWidget(self.coronalI_label, 2, 1, 1, 1)
self.coronal_gridLayout.addWidget(self.coronal_view, 1, 1, 1, 1)
self.imagecont_gridLayout.addWidget(self.xaxis_label, 0, 0, 1, 1)
self.imagecont_gridLayout.addWidget(self.xaxis_slider, 0, 1, 1, 1)
self.imagecont_gridLayout.addWidget(self.xaxis_spinbox, 0, 2, 1, 1)
self.imagecont_gridLayout.addWidget(self.yaxis_label, 1, 0, 1, 1)
self.imagecont_gridLayout.addWidget(self.yaxis_slider, 1, 1, 1, 1)
self.imagecont_gridLayout.addWidget(self.yaxis_spinbox, 1, 2, 1, 1)
self.imagecont_gridLayout.addWidget(self.zaxis_label, 2, 0, 1, 1)
self.imagecont_gridLayout.addWidget(self.zaxis_slider, 2, 1, 1, 1)
self.imagecont_gridLayout.addWidget(self.zaxis_spinbox, 2, 2, 1, 1)
self.imagecont_gridLayout.addWidget(self.frame_label, 3, 0, 1, 1)
self.imagecont_gridLayout.addWidget(self.frame_slider, 3, 1, 1, 1)
self.imagecont_gridLayout.addWidget(self.frame_spinbox, 3, 2, 1, 1)
self.imageframe_gridLayout.addLayout(self.axial_gridLayout, 1, 1, 1, 1)
self.imageframe_gridLayout.addLayout(self.coronal_gridLayout, 1, 2, 1,
1)
self.imageframe_gridLayout.addLayout(self.sagittal_gridLayout, 1, 0, 1,
1)
# self.graphcontrol_gridLayout.addWidget(self.addmask_button, 3, 0, 1, 1)
# self.graphcontrol_gridLayout.addWidget(self.removemask_button, 3, 1, 1, 1)
# self.graphcontrol_gridLayout.addWidget(self.mask_listview, 0, 0, 1, 5)
# self.graphcontrol_gridLayout.addWidget(self.savepng_button, 3, 4, 1, 1)
# self.graphcontrol_gridLayout.addWidget(self.savecsv_button, 3, 3, 1, 1)
self.verticalLayout.addWidget(self.slicecontrol_pane)
self.horizontalLayout.addWidget(self.graph_view)
# self.horizontalLayout.addWidget(self.graphcontrol_pane)
self.main_gridLayout.addWidget(self.imageframe, 0, 0, 1, 2)
self.main_gridLayout.addWidget(self.controller_frame, 1, 0, 1, 1)
self.main_gridLayout.addWidget(self.graph_frame, 1, 1, 1, 1)
def set_objectnames(self):
self.setObjectName(u"data_browser")
self.imageframe.setObjectName(u"image_frame")
self.axial_gridLayout.setObjectName(u"axial_gridLayout")
self.coronal_gridLayout.setObjectName(u"coronal_gridLayout")
self.sagittal_gridLayout.setObjectName(u"sagittal_gridLayout")
# TODO: Will reactivate these on later version
# self.axial_title.setObjectName(u"axial_label")
# self.coronal_title.setObjectName(u"coronal_label")
# self.sagittal_title.setObjectName(u"sagittal_label")
self.axial_view.setObjectName(u"axial_view")
self.sagittal_view.setObjectName(u"sagittal_view")
self.coronal_view.setObjectName(u"coronal_view")
# self.axialL_label.setObjectName(u"axialL_label")
# self.axialR_label.setObjectName(u"axialR_label")
# self.axialA_label.setObjectName(u"axialA_label")
# self.axialP_label.setObjectName(u"axialP_label")
# self.sagittalS_label.setObjectName(u"sagittalS_label")
# self.sagittalA_label.setObjectName(u"sagittalA_label")
# self.sagittalI_label.setObjectName(u"sagittalI_label")
# self.sagittalP_label.setObjectName(u"sagittalP_label")
# self.coronalL_label.setObjectName(u"coronalL_label")
# self.coronalS_label.setObjectName(u"coronalS_label")
# self.coronalR_label.setObjectName(u"coronalR_label")
# self.coronalI_label.setObjectName(u"coronalI_label")
self.controller_frame.setObjectName(u"controller_frame")
self.slicecontrol_pane.setObjectName(u"slicecontrol_pane")
self.xaxis_label.setObjectName(u"xaxis_label")
self.xaxis_slider.setObjectName(u"xaxis_slider")
self.xaxis_spinbox.setObjectName(u"xaxis_spinbox")
self.yaxis_label.setObjectName(u"yaxis_label")
self.yaxis_slider.setObjectName(u"yaxis_slider")
self.yaxis_spinbox.setObjectName(u"yaxis_spinbox")
self.zaxis_label.setObjectName(u"zaxis_label")
self.zaxis_slider.setObjectName(u"zaxis_slider")
self.zaxis_spinbox.setObjectName(u"zaxis_spinbox")
self.frame_label.setObjectName(u"frame_label")
self.frame_slider.setObjectName(u"frame_slider")
self.frame_spinbox.setObjectName(u"frame_spinbox")
self.graph_frame.setObjectName(u"graph_frame")
self.graph_view.setObjectName(u"graph_view")
# TODO: Will reactivate these on later version
# self.graphcontrol_pane.setObjectName(u"graphcontrol_pane")
# self.addmask_button.setObjectName(u"addmask_button")
# self.removemask_button.setObjectName(u"removemask_button")
# self.mask_listview.setObjectName(u"mask_listview")
# self.savepng_button.setObjectName(u"savepng_button")
# self.savecsv_button.setObjectName(u"savecsv_button")
self.imagecont_gridLayout.setObjectName(u"imagecont_gridLayout")
self.imageframe_gridLayout.setObjectName(u"imageframe_gridLayout")
# self.graphcontrol_gridLayout.setObjectName(u"graphcontrol_gridLayout")
self.verticalLayout.setObjectName(u"verticalLayout")
self.horizontalLayout.setObjectName(u"horizontalLayout")
self.main_gridLayout.setObjectName(u"main_gridLayout")
QMetaObject.connectSlotsByName(self)
def set_texts(self):
self.setWindowTitle(u"Data Browser")
# TODO: Will reactivate these on later version
# self.axial_title.setText(u"**Axial**")
# self.coronal_title.setText(u"**Coronal**")
# self.sagittal_title.setText(u"**Sagittal**")
# self.sagittalS_label.setText(u"**S**")
# self.sagittalA_label.setText(u"**A**")
# self.sagittalI_label.setText(u"**I**")
# self.sagittalP_label.setText(u"**P**")
# self.axialL_label.setText(u"**L**")
# self.axialA_label.setText(u"**A**")
# self.axialR_label.setText(u"**R**")
# self.axialP_label.setText( u"**P**")
# self.coronalL_label.setText(u"**L**")
# self.coronalS_label.setText(u"**S**")
# self.coronalR_label.setText(u"**R**")
# self.coronalI_label.setText(u"**I**")
self.slicecontrol_pane.setTitle(u"Slice Control Pane")
self.xaxis_label.setText(u"x")
self.yaxis_label.setText(u"y")
self.zaxis_label.setText(u"z")
self.frame_label.setText(u"Frame")
# TODO: Will reactivate these on later version
# self.graphcontrol_pane.setTitle(u"Graph Control Pane")
# self.addmask_button.setText(u"+")
# self.removemask_button.setText(u"-")
# self.savepng_button.setText(u"toPNG")
# self.savecsv_button.setText(u"toCSV")
def plot_timecourse(self, x, y):
self.graph_frame.setEnabled(True)
self.graph_view.clear()
pen = pg.mkPen(color=(255, 0, 0))
if x is None:
x = [0]
y = [y]
self.graph_view.plot(x, y, pen=pen, symbol='o')
else:
self.graph_view.plot(x, y, pen=pen)
def get_coord(self):
x = self.xaxis_slider.value()
y = self.yaxis_slider.value()
z = self.zaxis_slider.value()
return (x, y, z)
class installAir(confStack):
def __init_stack__(self):
self.dbg = False
self._debug("installer load")
self.description = (_("Air Apps Installer"))
self.menu_description = (_("Install air apps"))
self.icon = ('air-installer')
self.tooltip = (_(
"From here you can manage the air apps installed on your system"))
self.index = 2
self.enabled = True
self.level = 'system'
# self.hideControlButtons()
self.airinstaller = installer.AirManager()
self.setStyleSheet(self._setCss())
#def __init__
def _load_screen(self):
def _fileChooser():
fdia = QFileDialog()
fdia.setNameFilter("air apps(*.air)")
if (fdia.exec_()):
fchoosed = fdia.selectedFiles()[0]
self.inp_file.setText(fchoosed)
self.updateScreen()
box = QGridLayout()
box.addWidget(QLabel(_("Air file")), 0, 0, 1, 1, Qt.AlignBottom)
self.inp_file = QLineEdit()
self.inp_file.setPlaceholderText(_("Choose file for install"))
box.addWidget(self.inp_file, 1, 0, 1, 1, Qt.AlignTop)
btn_file = QPushButton("...")
btn_file.setObjectName("fileButton")
btn_file.clicked.connect(_fileChooser)
box.addWidget(btn_file, 1, 1, 1, 1, Qt.AlignLeft | Qt.AlignTop)
self.frame = QFrame()
box.addWidget(self.frame, 2, 0, 1, 1, Qt.AlignTop)
framebox = QGridLayout()
self.frame.setLayout(framebox)
framebox.addWidget(QLabel(_("App name")), 0, 0, 1, 1, Qt.AlignBottom)
self.btn_icon = QPushButton()
self.btn_icon.setToolTip(_("Push for icon change"))
framebox.addWidget(self.btn_icon, 0, 1, 2, 1, Qt.AlignLeft)
self.inp_name = QLineEdit()
self.inp_name.setObjectName("fileInput")
self.inp_name.setPlaceholderText(_("Application name"))
framebox.addWidget(self.inp_name, 1, 0, 1, 1, Qt.AlignTop)
framebox.addWidget(QLabel(_("App description")), 2, 0, 1, 1,
Qt.AlignBottom)
self.inp_desc = QLineEdit()
self.inp_desc.setPlaceholderText(_("Application description"))
framebox.addWidget(self.inp_desc, 3, 0, 1, 2, Qt.AlignTop)
self.setLayout(box)
self.updateScreen()
return (self)
#def _load_screen
def _loadAppData(self, air=""):
if air:
air_info = installer.AirManager().get_air_info(air)
pb = air_info.get('pb', '')
if pb:
#Convert GDK pixbuf to QPixmap
img = QtGui.QImage(GdkPixbuf.Pixbuf.get_pixels(pb),
GdkPixbuf.Pixbuf.get_width(pb),
GdkPixbuf.Pixbuf.get_height(pb),
QtGui.QImage.Format_ARGB32
) #,GdkPixbuf.Pixbuf.get_rowstride(pb))
icon = QtGui.QIcon(QtGui.QPixmap(img))
self.btn_icon.setIcon(icon)
self.btn_icon.setIconSize(QSize(64, 64))
name = air_info.get('name', os.path.basename(self.inp_file.text()))
self.inp_name.setText(name)
else:
self.inp_name.setText("")
self.inp_desc.setText("")
icon = QtGui.QIcon.fromTheme("application-x-air-installer")
self.btn_icon.setIcon(icon)
self.btn_icon.setIconSize(QSize(64, 64))
self.frame.setEnabled(False)
#def _loadAppData
def updateScreen(self):
self.frame.setEnabled(True)
air = self.inp_file.text()
self._loadAppData(air)
return True
#def _udpate_screen
def writeConfig(self):
tmp_icon = tempfile.mkstemp()[1]
self.btn_icon.icon().pixmap(QSize(64, 64)).save(tmp_icon, "PNG")
subprocess.check_call(['/usr/bin/xhost', '+'])
air = self.inp_file.text()
try:
ins = subprocess.check_call([
'pkexec', '/usr/bin/air-helper-installer.py', 'install', air,
tmp_icon
])
self.install_err = False
except Exception as e:
self._debug(e)
subprocess.check_output([
"xdg-mime", "install",
"/usr/share/mime/packages/x-air-installer.xml"
])
subprocess.check_output([
"xdg-mime", "default",
"/usr/share/applications/air-installer.desktop",
"/usr/share/mime/packages/x-air-installer.xml"
],
input=b"")
subprocess.check_call(['/usr/bin/xhost', '-'])
self.showMsg(_("App %s installed succesfully" % os.path.basename(air)))
#def writeConfig
def _setCss(self):
css = """
#fileButton{
margin:0px;
padding:1px;
}
#fileInput{
margin:0px;
}
#imgButton{
margin:0px;
padding:0px;
}"""
return (css)
class installApp(confStack):
def __init_stack__(self):
self.dbg = False
self._debug("addApp load")
self.description = (_("Add Appimage"))
self.menu_description = (_("Add appimages"))
self.icon = ('x-appimage')
self.tooltip = (
_("From here you can add an appimages from your system"))
self.index = 2
self.enabled = True
self.level = 'system'
self.setStyleSheet(self._setCss())
self.appPath = "%s/Applications" % os.environ["HOME"]
self.appmanager = appmanager()
#def __init__
def _load_screen(self):
def _fileChooser():
fdia = QFileDialog()
fdia.setNameFilter("appimages(*.appimage)")
if (fdia.exec_()):
fchoosed = fdia.selectedFiles()[0]
self.inp_file.setText(fchoosed)
self.updateScreen()
box = QGridLayout()
box.addWidget(QLabel(_("Appimage")), 0, 0, 1, 1, Qt.AlignBottom)
self.inp_file = QLineEdit()
self.inp_file.setPlaceholderText(_("Choose appimage to add"))
box.addWidget(self.inp_file, 1, 0, 1, 1, Qt.AlignTop)
btn_file = QPushButton("...")
btn_file.setObjectName("fileButton")
btn_file.clicked.connect(_fileChooser)
box.addWidget(btn_file, 1, 1, 1, 1, Qt.AlignLeft | Qt.AlignTop)
self.frame = QFrame()
box.addWidget(self.frame, 2, 0, 1, 1, Qt.AlignTop)
framebox = QGridLayout()
self.frame.setLayout(framebox)
framebox.addWidget(QLabel(_("App name")), 0, 0, 1, 1, Qt.AlignBottom)
self.btn_icon = QPushButton()
self.btn_icon.setToolTip(_("Push for icon change"))
framebox.addWidget(self.btn_icon, 0, 1, 2, 1, Qt.AlignLeft)
self.inp_name = QLineEdit()
self.inp_name.setObjectName("fileInput")
self.inp_name.setPlaceholderText(_("Application name"))
framebox.addWidget(self.inp_name, 1, 0, 1, 1, Qt.AlignTop)
framebox.addWidget(QLabel(_("App description")), 2, 0, 1, 1,
Qt.AlignBottom)
self.inp_desc = QLineEdit()
self.inp_desc.setPlaceholderText(_("Application description"))
framebox.addWidget(self.inp_desc, 3, 0, 1, 2, Qt.AlignTop)
self.setLayout(box)
self.updateScreen()
return (self)
#def _load_screen
def _loadAppData(self, app=""):
if app:
data = self.appmanager.getAppData(app)
self.inp_name.setText(data.get('name', ''))
self.inp_desc.setText(data.get('desc', ''))
self.btn_icon.setIcon(data.get('icon', ''))
else:
self.inp_name.setText("")
self.inp_desc.setText("")
icon = QtGui.QIcon.fromTheme("x-appimage")
self.btn_icon.setIcon(icon)
self.btn_icon.setIconSize(QSize(64, 64))
self.frame.setEnabled(False)
#def _loadAppData
def updateScreen(self):
self.frame.setEnabled(True)
app = self.inp_file.text()
self._loadAppData(app)
return True
#def _udpate_screen
def writeConfig(self):
app = self.inp_file.text()
if self.appmanager.localInstall(app):
self.showMsg(
_("App %s installed succesfully" % os.path.basename(app)))
else:
self.showMsg(
_("App %s could not be installed" % os.path.basename(app)))
#def writeConfig
def _setCss(self):
css = """
#fileButton{
margin:0px;
padding:1px;
}
#fileInput{
margin:0px;
}
#imgButton{
margin:0px;
padding:0px;
}"""
return (css)
