def start_RepTate(argv):
"""
Main RepTate application.
:param list argv: Command line parameters passed to Reptate
"""
loglevel = logging.DEBUG
GUI = True
QApplication.setStyle("Fusion") # comment that line for a native look
# for a list of available styles: "from PyQt5.QtWidgets import QStyleFactory; print(QStyleFactory.keys())"
# app = QApplication(sys.argv)
# FOR DEBUGGING PURPOSES: Set Single or MultiThread (default)
CmdBase.calcmode = CalcMode.singlethread
ex = QApplicationManager(loglevel=loglevel)
ex.setStyleSheet("QTabBar::tab { color:black; height: 22px; }")
########################################################
# THE FOLLOWING LINES ARE FOR TESTING A PARTICULAR CASE
# Open a particular application
ex.handle_new_app("React")
#####################
# Open a Dataset
ex.applications["React1"].new_tables_from_files([
"data%sReact%sout1.reac" % ((os.sep, ) * 2),
])
# Open a theory
ex.applications["React1"].datasets["Set1"].new_theory("BOB Architecture")
ex.show()
sys.exit(app.exec_())
def start_RepTate(argv):
"""
Main RepTate application.
:param list argv: Command line parameters passed to Reptate
"""
loglevel = logging.DEBUG
GUI = True
QApplication.setStyle("Fusion") # comment that line for a native look
# for a list of available styles: "from PyQt5.QtWidgets import QStyleFactory; print(QStyleFactory.keys())"
app = QApplication(sys.argv)
# FOR DEBUGGING PURPOSES: Set Single or MultiThread (default)
CmdBase.calcmode = CalcMode.singlethread
ex = QApplicationManager(loglevel=loglevel)
ex.setStyleSheet("QTabBar::tab { color:black; height: 22px; }")
ex.show()
########################################################
# THE FOLLOWING LINES ARE FOR TESTING A PARTICULAR CASE
# Open a particular application
ex.handle_new_app("TTS")
# Open a Dataset
pi_dir = "data%sPI_LINEAR%sosc%s" % ((os.sep, ) * 3)
ex.applications["TTS1"].new_tables_from_files([
pi_dir + "PI223k-14c_-45C_FS2_PP10.osc",
pi_dir + "PI223k-14c_-40C_FS_PP10.osc",
pi_dir + "PI223k-14c_-30C_FS_PP10.osc",
pi_dir + "PI223k-14_-10C_FS_PP10.osc",
pi_dir + "PI223k-14c_-20C_FS_PP10.osc",
pi_dir + "PI223k-14b_0C_FS4_PP10.osc",
pi_dir + "PI223k-14_10C_FS_PP10.osc",
pi_dir + "PI223k-14b_25C_FS3_PP10.osc",
pi_dir + "PI223k-14_25C_FS3_PP10.osc",
pi_dir + "PI223k-14c_30C_FS3_PP10.osc",
pi_dir + "PI223k-14_40C_FS_PP10.osc",
pi_dir + "PI223k-14_50C_FS_PP10.osc",
])
# Open a theory
ex.applications["TTS1"].datasets["Set1"].new_theory("Automatic TTS Shift")
# Minimize the theory
ex.applications["TTS1"].datasets["Set1"].handle_actionMinimize_Error()
# Open a theory
ex.applications["TTS1"].datasets["Set1"].new_theory("WLF Shift")
# Minimize the theory
ex.applications["TTS1"].datasets["Set1"].handle_actionMinimize_Error()
sys.exit(app.exec_())
def start_RepTate(argv):
"""
Main RepTate application.
:param list argv: Command line parameters passed to Reptate
"""
loglevel = logging.DEBUG
GUI = True
QApplication.setStyle("Fusion") # comment that line for a native look
# for a list of available styles: "from PyQt5.QtWidgets import QStyleFactory; print(QStyleFactory.keys())"
app = QApplication(sys.argv)
# FOR DEBUGGING PURPOSES: Set Single or MultiThread (default)
CmdBase.calcmode = CalcMode.singlethread
ex = QApplicationManager(loglevel=loglevel)
ex.setStyleSheet("QTabBar::tab { color:black; height: 22px; }")
ex.show()
########################################################
# THE FOLLOWING LINES ARE FOR TESTING A PARTICULAR CASE
# Open a particular application
ex.handle_new_app("MWD")
#####################
# Open a Dataset
gt_dir = "data%sMWD%s" % ((os.sep, ) * 2)
ex.applications["MWD1"].new_tables_from_files([
gt_dir + "Munstedt_PSIII.gpc",
])
# Open a theory
ex.applications["MWD1"].datasets["Set1"].new_theory("Discretize MWD")
ex.applications["MWD1"].datasets["Set1"].new_theory("LogNormal")
ex.applications["MWD1"].datasets["Set1"].new_theory("GEX")
sys.exit(app.exec_())
ex.handle_new_app("MWD")
# THE TEST FAILS FOR THE CODE BELOW... STRANGE!
ex.applications["MWD2"].new_tables_from_files([
gt_dir + "Munstedt_PSIV.gpc",
])
# Open a theory
ex.applications["MWD2"].datasets["Set1"].new_theory("Discretize MWD")
ex.applications["MWD2"].datasets["Set1"].new_theory("LogNormal")
ex.applications["MWD2"].datasets["Set1"].new_theory("GEX")
sys.exit(app.exec_())
def start_RepTate(argv):
"""
Main RepTate application.
:param list argv: Command line parameters passed to Reptate
"""
loglevel = logging.DEBUG
GUI = True
QApplication.setStyle("Fusion") # comment that line for a native look
# for a list of available styles: "from PyQt5.QtWidgets import QStyleFactory; print(QStyleFactory.keys())"
app = QApplication(sys.argv)
# FOR DEBUGGING PURPOSES: Set Single or MultiThread (default)
CmdBase.calcmode = CalcMode.singlethread
ex = QApplicationManager(loglevel=loglevel)
ex.setStyleSheet("QTabBar::tab { color:black; height: 22px; }")
ex.show()
########################################################
# THE FOLLOWING LINES ARE FOR TESTING A PARTICULAR CASE
# Open a particular application
ex.handle_new_app("Gt")
#####################
# TEST MaxwellModesTime
# Open a Dataset
gt_dir = "data%sGt%s" % ((os.sep, ) * 2)
ex.applications["Gt1"].new_tables_from_files([
gt_dir + "C0224_NVT_450K_1atm.gt",
])
# Open a theory
ex.applications["Gt1"].datasets["Set1"].new_theory("Maxwell Modes")
# Minimize the theory
ex.applications["Gt1"].datasets["Set1"].handle_actionMinimize_Error()
ex.applications["Gt1"].datasets["Set1"].new_theory("Rouse")
# # Minimize the theory
ex.applications["Gt1"].datasets["Set1"].handle_actionMinimize_Error()
sys.exit(app.exec_())
def start_RepTate(argv):
"""
Main RepTate application.
:param list argv: Command line parameters passed to Reptate
"""
loglevel = logging.DEBUG
GUI = True
QApplication.setStyle("Fusion") # comment that line for a native look
# for a list of available styles: "from PyQt5.QtWidgets import QStyleFactory; print(QStyleFactory.keys())"
app = QApplication(sys.argv)
# FOR DEBUGGING PURPOSES: Set Single or MultiThread (default)
CmdBase.calcmode = CalcMode.singlethread
ex = QApplicationManager(loglevel=loglevel)
ex.setStyleSheet("QTabBar::tab { color:black; height: 22px; }")
ex.show()
########################################################
# THE FOLLOWING LINES ARE FOR TESTING A PARTICULAR CASE
# Open a particular application
ex.handle_new_app("LVE")
#####################
# TEST Likhtman-McLeish
# Open a Dataset
pi_dir = "data%sPI_LINEAR%s" % ((os.sep,) * 2)
ex.applications["LVE1"].new_tables_from_files(
[
pi_dir + "PI_13.5k_T-35.tts",
pi_dir + "PI_23.4k_T-35.tts",
pi_dir + "PI_33.6k_T-35.tts",
pi_dir + "PI_94.9k_T-35.tts",
pi_dir + "PI_225.9k_T-35.tts",
pi_dir + "PI_483.1k_T-35.tts",
pi_dir + "PI_634.5k_T-35.tts",
pi_dir + "PI_1131k_T-35.tts",
]
)
# Open a theory
ex.applications["LVE1"].datasets["Set1"].new_theory("Likhtman-McLeish")
# Minimize the theory
ex.applications["LVE1"].datasets["Set1"].handle_actionMinimize_Error()
# Open a theory
ex.applications["LVE1"].datasets["Set1"].new_theory("Rouse")
# Minimize the theory
ex.applications["LVE1"].datasets["Set1"].handle_actionMinimize_Error()
#####################
# TEST Carreau-Yasuda
# Open a Dataset
ex.handle_new_app("LVE")
ex.applications["LVE2"].new_tables_from_files(
[pi_dir + "PI_483.1k_T-35.tts",]
)
# Switch the view
ex.applications["LVE2"].view_switch("logetastar")
# Open a theory
ex.applications["LVE2"].datasets["Set1"].new_theory("Carreau-Yasuda")
# Minimize the theory
ex.applications["LVE2"].datasets["Set1"].handle_actionMinimize_Error()
# Open a theory
ex.applications["LVE2"].datasets["Set1"].new_theory("Maxwell Modes")
# Minimize the theory
ex.applications["LVE2"].datasets["Set1"].handle_actionMinimize_Error()
#####################
# TEST DTD
# Open a Dataset
ex.handle_new_app("LVE")
pi_dir = "data%sPI_STAR%s" % ((os.sep,) * 2)
ex.applications["LVE3"].new_tables_from_files(
[pi_dir + "S6Z8.1T40.tts", pi_dir + "S6Z12T40.tts", pi_dir + "S6Z16T40.tts",]
)
ex.applications["LVE3"].datasets["Set1"].new_theory("DTD Stars")
ex.applications["LVE3"].datasets["Set1"].handle_actionMinimize_Error()
sys.exit(app.exec_())
def start_RepTate(argv):
"""
Main RepTate application.
:param list argv: Command line parameters passed to Reptate
"""
GUI = True
parser = argparse.ArgumentParser(
description=
"RepTate: Rheology of Entangled Polymers: Toolkit for the Analysis of Theory and Experiment.",
epilog=
"(c) Jorge Ramirez ([email protected], UPM), Victor Boudara (U. Leeds) (2017-2020)",
)
parser.add_argument("-d",
"--dpi",
help="High DPI support on Windows",
action="store_true")
parser.add_argument("-l",
"--tool",
help="Open the tool L (if available)",
default="",
metavar="L")
parser.add_argument(
"-s",
"--single",
help="Run Reptate as a single thread application",
action="store_true",
)
parser.add_argument(
"-t",
"--theory",
help="Open the theory T (if available)",
default="",
metavar="T",
)
parser.add_argument("-v",
"--verbose",
help="Write debug information to stdout",
action="store_true")
parser.add_argument("-V",
"--version",
help="Print RepTate version and exit",
action="store_true")
parser.add_argument("finlist", nargs="*")
args = parser.parse_args(args=argv)
# Get files from command line
dictfiles = get_argument_files(args.finlist)
if args.version:
print(QApplicationManager.intro)
sys.exit()
if args.verbose:
loglevel = logging.DEBUG
else:
loglevel = logging.INFO
QApplication.setStyle("Fusion") # comment that line for a native look
# for a list of available styles: "from PyQt5.QtWidgets import QStyleFactory; print(QStyleFactory.keys())"
if args.dpi or sys.platform == "darwin":
os.environ["QT_AUTO_SCREEN_SCALE_FACTOR"] = "1"
QCoreApplication.setAttribute(Qt.AA_EnableHighDpiScaling, True)
QApplication.setAttribute(Qt.AA_EnableHighDpiScaling, True)
QApplication.setAttribute(Qt.AA_UseHighDpiPixmaps, True)
app = QApplication(sys.argv)
app.setApplicationName("RepTate")
if args.dpi and sys.platform == "win32":
#os.environ["QT_AUTO_SCREEN_SCALE_FACTOR"] = "1"
import matplotlib
#matplotlib.pyplot.matplotlib.rcParams['figure.dpi'] = int (np.round(app.desktop().physicalDpiX()/10))
matplotlib.pyplot.matplotlib.rcParams['figure.dpi'] = 34
#matplotlib.pyplot.matplotlib.rcParams['figure.dpi'] = app.desktop().physicalDpiX()/4
splash = SplashScreen()
splash.show()
ex = QApplicationManager(loglevel=loglevel)
ex.setStyleSheet("QTabBar::tab { color:black; height: 22px; }")
# splash.showMessage("Loading RepTate...")
splash.finish(ex)
# Handle files & open apps accordingly
CmdBase.calcmode = (
CalcMode.singlethread
) # avoid troubles when loading multiple apps/files/theories
d = {
ex.extension: ex.appname
for ex in list(ex.available_applications.values())
}
toolopen = False
for k in dictfiles.keys():
if k == "rept":
ex.open_project(dictfiles[k][0])
elif np.any([k == key for key in d.keys()]):
# exact match
ex.handle_new_app(d[k])
appname = "%s%d" % (d[k], ex.application_counter)
ex.applications[appname].new_tables_from_files(dictfiles[k])
if args.theory in list(ex.applications[appname].theories.keys()):
ex.applications[appname].datasets["Set1"].new_theory(
args.theory)
if args.tool in (
list(ex.applications[appname].availabletools.keys()) +
list(ex.applications[appname].extratools.keys())):
ex.applications[appname].new_tool(args.tool)
ex.applications[appname].update_all_ds_plots()
ex.applications[appname].showDataInspector(True)
toolopen = True
elif np.any([k in key
for key in d.keys()]): # works with spaces in extensions
for key in d.keys():
if k in key:
ex.handle_new_app(d[key])
appname = "%s%d" % (d[key], ex.application_counter)
ex.applications[appname].new_tables_from_files(
dictfiles[k])
if args.theory in list(
ex.applications[appname].theories.keys()):
ex.applications[appname].datasets["Set1"].new_theory(
args.theory)
if args.tool in (
list(
ex.applications[appname].availabletools.keys())
+
list(ex.applications[appname].extratools.keys())):
ex.applications[appname].new_tool(args.tool)
ex.applications[appname].update_all_ds_plots()
ex.applications[appname].showDataInspector(True)
toolopen = True
break
else:
print("File type %s cannot be opened" % k)
# set the calmode back
if args.single:
CmdBase.calcmode = CalcMode.singlethread
else:
CmdBase.calcmode = CalcMode.multithread
ex.showMaximized()
sys.exit(app.exec_())
def start_RepTate(argv):
"""
Main RepTate application.
:param list argv: Command line parameters passed to Reptate
"""
GUI = True
parser = argparse.ArgumentParser(
description=
'RepTate: Rheologhy of Entangled Polymers: Toolkit for the Analysis of Theory and Experiment.',
epilog=
'(c) Jorge Ramirez - [email protected] - UPM , Victor Boudara - U. Leeds (2018)'
)
parser.add_argument('-d',
'--dpi',
help='High DPI support on Windows',
action='store_true')
parser.add_argument('-s',
'--single',
help='Run Reptate as a single thread application',
action='store_true')
parser.add_argument('-t',
'--theory',
help='Open the given theory (if available)',
default='')
parser.add_argument('-v',
'--verbose',
help='Write debug information to stdout',
action='store_true')
parser.add_argument('-V',
'--version',
help='Print RepTate version and exit',
action='store_true')
parser.add_argument('finlist', nargs='*')
args = parser.parse_args(args=argv)
# Get files from command line
dictfiles = get_argument_files(args.finlist)
if args.version:
print(QApplicationManager.intro)
sys.exit()
if args.verbose:
loglevel = logging.DEBUG
else:
loglevel = logging.INFO
QApplication.setStyle("Fusion") #comment that line for a native look
#for a list of available styles: "from PyQt5.QtWidgets import QStyleFactory; print(QStyleFactory.keys())"
if args.dpi:
os.environ["QT_AUTO_SCREEN_SCALE_FACTOR"] = "1"
QCoreApplication.setAttribute(Qt.AA_EnableHighDpiScaling, True)
QApplication.setAttribute(Qt.AA_EnableHighDpiScaling, True)
QApplication.setAttribute(Qt.AA_UseHighDpiPixmaps, True)
app = QApplication(sys.argv)
#if args.dpi:
# app.setAttribute(Qt.AA_EnableHighDpiScaling)
splash = SplashScreen()
# splash.showMessage("Loading RepTate...\n")
splash.show()
ex = QApplicationManager(loglevel=loglevel)
ex.setStyleSheet("QTabBar::tab { color:black; height: 22px; }")
# splash.showMessage("Loading RepTate...")
splash.finish(ex)
# Handle files & open apps accordingly
CmdBase.calcmode = CalcMode.singlethread # avoid troubles when loading multiple apps/files/theories
d = {
ex.extension: ex.appname
for ex in list(ex.available_applications.values())
}
for k in dictfiles.keys():
if k == 'rept':
ex.open_project(dictfiles[k][0])
elif np.any([k == key for key in d.keys()]):
# exact match
ex.handle_new_app(d[k])
appname = "%s%d" % (d[k], ex.application_counter)
ex.applications[appname].new_tables_from_files(dictfiles[k])
if args.theory in list(ex.applications[appname].theories.keys()):
ex.applications[appname].datasets['Set1'].new_theory(
args.theory)
elif np.any([k in key
for key in d.keys()]): # works with spaces in extensions
for key in d.keys():
if k in key:
ex.handle_new_app(d[key])
appname = "%s%d" % (d[key], ex.application_counter)
ex.applications[appname].new_tables_from_files(
dictfiles[k])
if args.theory in list(
ex.applications[appname].theories.keys()):
ex.applications[appname].datasets['Set1'].new_theory(
args.theory)
break
else:
print("File type %s cannot be opened" % k)
# set the calmode back
if args.single:
CmdBase.calcmode = CalcMode.singlethread
else:
CmdBase.calcmode = CalcMode.multithread
def my_excepthook(type, value, tb):
"""Catch exceptions and print error message. Open email client to report bug to devlopers"""
tb_msg = ''
for e in traceback.format_tb(tb):
tb_msg += str(e)
tb_msg += "%s: %s\n" % (type.__name__, str(value))
#print(tb_msg) # JR: Not needed anymore
l = logging.getLogger('RepTate')
if CmdBase.mode == CmdMode.GUI:
l.error(tb_msg.replace('\n', '<br>'))
else:
l.error(tb_msg)
msg = 'Sorry, something went wrong:\n \"%s: %s\".\nTry to save your work and quit RepTate.\nDo you want to help RepTate developers by reporting this bug?' % (
type.__name__, str(value))
ans = QMessageBox.critical(ex, 'Critical Error', msg,
QMessageBox.Yes | QMessageBox.No)
if ans == QMessageBox.Yes:
address = "*****@*****.**"
subject = "Something went wrong"
body = "%s\nIf you can, please describe below what you were doing with RepTate when the error happened (apps and theories or tools open if any) and send the message\nPlease, do NOT include confidential information\n%s\nError Traceback:\n %s" % (
"-" * 60, "-" * 60 + "\n" * 10 + "-" * 60, tb_msg)
QDesktopServices.openUrl(
QUrl(
"mailto:?to=%s&subject=%s&body=%s" %
(address, subject, body), QUrl.TolerantMode))
sys.excepthook = my_excepthook
ex.showMaximized()
sys.exit(app.exec_())
def start_RepTate(argv):
"""
Main RepTate application.
:param list argv: Command line parameters passed to Reptate
"""
loglevel = logging.DEBUG
GUI = True
QApplication.setStyle("Fusion") # comment that line for a native look
# for a list of available styles: "from PyQt5.QtWidgets import QStyleFactory; print(QStyleFactory.keys())"
app = QApplication(sys.argv)
# FOR DEBUGGING PURPOSES: Set Single or MultiThread (default)
CmdBase.calcmode = CalcMode.singlethread
ex = QApplicationManager(loglevel=loglevel)
ex.setStyleSheet("QTabBar::tab { color:black; height: 22px; }")
ex.show()
########################################################
# THE FOLLOWING LINES ARE FOR TESTING A PARTICULAR CASE
# Open a particular application
####################
# open linear rheology data to import the Maxwell modes
ex.handle_new_app("LVE")
dow_dir = "data%sDOW%sLinear_Rheology_TTS%s" % ((os.sep, ) * 3)
ex.applications["LVE1"].new_tables_from_files([
dow_dir + "DOWLDPEL150R_160C.tts",
])
ex.applications["LVE1"].datasets["Set1"].new_theory("Maxwell Modes")
ex.applications["LVE1"].datasets["Set1"].handle_actionMinimize_Error()
#####################
# TEST Rolie-Poly
# Open a Dataset
ex.handle_new_app("NLVE")
dow_dir = "data%sDOW%sNon-Linear_Rheology%sStart-up_Shear%s" % (
(os.sep, ) * 4)
ex.applications["NLVE2"].new_tables_from_files([
dow_dir + "My_dow150-160-1 shear.shear",
dow_dir + "My_dow150-160-01 shear.shear",
dow_dir + "My_dow150-160-001 shear.shear",
dow_dir + "My_dow150-160-3 shear.shear",
dow_dir + "My_dow150-160-03 shear.shear",
dow_dir + "My_dow150-160-003 shear.shear",
dow_dir + "My_dow150-160-0003 shear.shear",
])
# Open a theory
ex.applications["NLVE2"].datasets["Set1"].new_theory("Rolie-Poly")
# Minimize the theory
# Copy Maxwell Modes
ex.applications["NLVE2"].datasets["Set1"].theories["RP1"].do_copy_modes(
"LVE1.Set1.MM1")
ex.applications["NLVE2"].datasets["Set1"].handle_actionMinimize_Error()
#####################
# TEST Rolie-Poly uniaxial extension
# Open a Dataset
ex.handle_new_app("NLVE")
dow_dir = "data%sDOW%sNon-Linear_Rheology%sStart-up_extension%s" % (
(os.sep, ) * 4)
ex.applications["NLVE3"].new_tables_from_files([
dow_dir + "My_dow150-160-01.uext",
dow_dir + "My_dow150-160-001.uext",
dow_dir + "My_dow150-160-0001.uext",
dow_dir + "My_dow150-160-03.uext",
dow_dir + "My_dow150-160-003.uext",
dow_dir + "My_dow150-160-0003.uext",
])
# Open a theory
ex.applications["NLVE3"].datasets["Set1"].new_theory("Rolie-Poly")
# select uniaxial extension
ex.applications["NLVE3"].datasets["Set1"].theories[
"RP1"].select_extensional_flow()
# Copy Maxwell Modes
ex.applications["NLVE3"].datasets["Set1"].theories["RP1"].do_copy_modes(
"LVE1.Set1.MM1")
# Minimize the theory
ex.applications["NLVE3"].datasets["Set1"].handle_actionMinimize_Error()
# Open a theory
ex.applications["NLVE3"].datasets["Set1"].new_theory("Pom-Pom")
sys.exit(app.exec_())