def saveSelections(self, event=None):
headers = ['class_num']
spiderDictionary = {}
key = 0
selectKeys = self.select_dictionary.keys()
selectKeys.sort()
# print "keys:", selectKeys
for counter in selectKeys:
key = key + 1
spiderDictionary[key] = [counter, self.select_dictionary[counter]]
# print "spiderDictionary:", key, counter, self.select_dictionary[counter]
# if non-empty, backup prior versions
if len(self.select_dictionary) > 0: backup(self.savefilename)
if Spiderutils.writeSpiderDocFile(self.savefilename,
spiderDictionary,
headers=headers,
append=1):
print 'Wrote', key, 'keys to %s' % os.path.basename(
self.savefilename)
else:
# showerror("Error!", "Unable to write to %s" % os.path.basename(self.savefilename))
print "Unable to write to", self.savefilename
def saveSelections(self, event=None) :
headers = ['class_num']
spiderDictionary = {}
key = 0
selectKeys = self.select_dictionary.keys()
selectKeys.sort()
for counter in selectKeys:
key = key + 1
spiderDictionary[key] = [counter, self.select_dictionary[counter]]
# if non-empty, backup prior versions
if len(self.select_dictionary) > 0 : backup(self.savefilename)
if Spiderutils.writeSpiderDocFile(self.savefilename, spiderDictionary, headers=headers, append=1):
print 'Wrote', key, 'keys to %s' % os.path.basename(self.savefilename)
else:
print "Unable to write to", self.savefilename
# read contents
for line in listL:
key += 1
split = line.split()
xdim = float(split[2])
ydim = float(split[3])
xcoord = float(split[0])
ycoord = float(split[1])
xcenter = xcoord + xdim/2
ycenter = ycoord + ydim/2
# ycenter = mic_y - (ycoord + ydim/2)
dictF[key] = [xcenter,ycenter,key,dummy]
# print filenum
# headers = ['XCOORD','YCOORD','PARTICLE','PEAK_HT','XDIM','YDIM']
headers = ['XCOORD','YCOORD','PARTICLE','PEAK_HT']
backup(outputdoc)
if Spiderutils.writeSpiderDocFile(outputdoc,dictF, headers=headers, append=0):
print 'Wrote', key, 'keys to %s' % os.path.basename(outputdoc)
else:
print "Error!", "Unable to write to %s" % os.path.basename(outputdoc)
else:
print "Error!", "Unable to read %s" % file
else:
print "syntax: emancoords2spiderdoc.py input_eman_coords output_spider_doc"
# print "syntax: emancoords2spiderdoc.py input_eman_coords input_micrograph output_spider_doc"
# read contents
for line in listL:
key += 1
split = line.split()
xdim = float(split[2])
ydim = float(split[3])
xcoord = float(split[0])
ycoord = float(split[1])
xcenter = xcoord + xdim/2
ycenter = ycoord + ydim/2
# ycenter = mic_y - (ycoord + ydim/2)
dictF[key] = [key,xcenter,ycenter,xcenter,ycenter,dummy]
# print filenum
# headers = ['XCOORD','YCOORD','PARTICLE','PEAK_HT','XDIM','YDIM']
headers = ['XCOORD','YCOORD','PARTICLE','PEAK_HT']
backup(outputdoc)
if Spiderutils.writeSpiderDocFile(outputdoc,dictF, headers=headers, append=0):
print 'Wrote', key, 'keys to %s' % os.path.basename(outputdoc)
else:
print "Error!", "Unable to write to %s" % os.path.basename(outputdoc)
else:
print "Error!", "Unable to read %s" % file
else:
print "syntax: emanrctcoords2spiderdoc.py input_eman_coords output_spider_doc"
# print "syntax: emancoords2spiderdoc.py input_eman_coords input_micrograph output_spider_doc"
filename = sys.argv[2]
F = {} # initialize dictionary
key = 0 # initialize key
if os.path.exists(file):
input = open(file, 'r')
L = input.readlines() # read line-by-line
input.close()
# read contents
for line in L:
filenum = Spiderutils.getfilenumber(line)
key += 1
F[key] = [filenum]
# print filenum
headers = ['file_number']
if Spiderutils.writeSpiderDocFile(filename,
F,
headers=headers,
append=0):
print 'Wrote', key, 'keys to %s' % os.path.basename(filename)
else:
print "Error!", "Unable to write to %s" % os.path.basename(
filename)
else:
print "Error!", "Unable to read %s" % file
else:
print "Syntax: makefilenums.py inputtextfile outputspiderdoc"