def testStripReport(self):
"""
_testStripReport_
Test whether or not we can strip input file information
from a FWJR and create a smaller object.
"""
myReport = Report("cmsRun1")
myReport.parse(self.xmlPath)
path1 = os.path.join(self.testDir, 'testReport1.pkl')
path2 = os.path.join(self.testDir, 'testReport2.pkl')
myReport.save(path1)
info = FileTools.getFileInfo(filename=path1)
sizeBefore = info['Size']
inputFiles = myReport.getAllInputFiles()
self.assertEqual(len(inputFiles), 1)
myReport.stripInputFiles()
self.assertEqual(len(myReport.getAllInputFiles()), 0)
myReport.save(path2)
info = FileTools.getFileInfo(filename=path2)
sizeAfter = info['Size']
self.assertGreater(sizeBefore, sizeAfter)
return
def testStripReport(self):
"""
_testStripReport_
Test whether or not we can strip input file information
from a FWJR and create a smaller object.
"""
myReport = Report("cmsRun1")
myReport.parse(self.xmlPath)
path1 = os.path.join(self.testDir, 'testReport1.pkl')
path2 = os.path.join(self.testDir, 'testReport2.pkl')
myReport.save(path1)
info = FileTools.getFileInfo(filename=path1)
sizeBefore = info['Size']
inputFiles = myReport.getAllInputFiles()
self.assertEqual(len(inputFiles), 1)
myReport.stripInputFiles()
self.assertEqual(len(myReport.getAllInputFiles()), 0)
myReport.save(path2)
info = FileTools.getFileInfo(filename=path2)
sizeAfter = info['Size']
self.assertGreater(sizeBefore, sizeAfter)
return
def __call__(self, errCode, executor, **args):
logging.critical("%s Diagnostic Handler invoked", self.__class__.__name__)
msg = "Error in CMSSW: %s\n" % (errCode)
jobRepXml = os.path.join(executor.step.builder.workingDir,
executor.step.output.jobReport)
excepInst = args.get('ExceptionInstance', None)
description = "Misc. CMSSW error"
if excepInst:
if hasattr(excepInst, 'detail'):
description = excepInst.detail
msg += str(excepInst)
if os.path.exists(jobRepXml):
# job report XML exists, load the exception information from it
try:
executor.report.parse(jobRepXml)
except FwkJobReportException:
# Job report is bad, the parse already puts a 50115 in the file
pass
reportStep = executor.report.retrieveStep(executor.stepName)
reportStep.status = errCode
# Grab stderr log from CMSSW
errLog = os.path.join(os.path.dirname(jobRepXml),
'%s-stderr.log' % (executor.stepName))
outLog = os.path.join(os.path.dirname(jobRepXml),
'%s-stdout.log' % (executor.stepName))
if os.path.exists(errLog):
logTail = FileTools.tail(errLog, DEFAULT_TAIL_LINES_FROM_LOG)
msg += '\n Adding last %s lines of CMSSW stderr:\n' % DEFAULT_TAIL_LINES_FROM_LOG
msg += logTail
if os.path.exists(outLog):
logTail = FileTools.tail(outLog, DEFAULT_TAIL_LINES_FROM_LOG)
msg += '\n Adding last %s lines of CMSSW stdout:\n' % DEFAULT_TAIL_LINES_FROM_LOG
msg += logTail
# If it exists, grab the SCRAM log
errLog = os.path.join(os.path.dirname(jobRepXml),
'scramOutput.log')
if os.path.exists(errLog):
logTail = FileTools.tail(errLog, 25)
msg += '\n Adding last ten lines of SCRAM error log:\n'
msg += logTail
# make sure the report has the error in it
dummy = getattr(executor.report.report, "errors", None) # Seems to do nothing
executor.report.addError(executor.stepName,
errCode, description, msg)
return
def __call__(self, errCode, executor, **args):
"""
Added for Steve to handle SCRAM script failure
Must fail job (since SCRAM didn't run)
"""
msg = "SCRAM scripts failed to run!\n"
if args.get('ExceptionInstance', False):
msg += str(args.get('ExceptionInstance'))
jobReport = os.path.join(executor.step.builder.workingDir,
executor.step.output.jobReport)
errLog = os.path.join(os.path.dirname(jobReport),
'scramOutput.log')
if os.path.exists(errLog):
logTail = FileTools.tail(errLog, DEFAULT_TAIL_LINES_FROM_LOG)
msg += '\n Adding last %s lines of SCRAM error log:\n' % DEFAULT_TAIL_LINES_FROM_LOG
msg += logTail
executor.report.addError(executor.stepName,
50513, "SCRAMScriptFailure", msg)
# Then mark the job as failed
if executor.report.report.status == 0:
executor.report.report.status = 1
def __call__(self, errCode, executor, **args):
print("%s Diagnostic Handler invoked" % self.__class__.__name__)
msg = "Exit %s: %s Exception from cmsRun" % (self.code, self.desc)
jobRepXml = os.path.join(executor.step.builder.workingDir,
executor.step.output.jobReport)
if os.path.exists(jobRepXml):
# job report XML exists, load the exception information from it
try:
self.parse(executor, jobRepXml)
except FwkJobReportException:
# Job report is bad, the parse already puts a 50115 in the file
pass
reportStep = executor.report.retrieveStep(executor.stepName)
reportStep.status = self.code
errLog = os.path.join(os.path.dirname(jobRepXml),
'%s-stderr.log' % (executor.stepName))
outLog = os.path.join(os.path.dirname(jobRepXml),
'%s-stdout.log' % (executor.stepName))
if os.path.exists(errLog):
logTail = FileTools.tail(errLog, DEFAULT_TAIL_LINES_FROM_LOG)
msg += '\n Adding last %s lines of CMSSW stderr:\n' % DEFAULT_TAIL_LINES_FROM_LOG
msg += logTail
if os.path.exists(outLog):
logTail = FileTools.tail(outLog, DEFAULT_TAIL_LINES_FROM_LOG)
msg += '\n Adding last %s lines of CMSSW stdout:\n' % DEFAULT_TAIL_LINES_FROM_LOG
msg += logTail
# make sure the report has the error in it
errSection = getattr(executor.report.report, "errors", None)
if errSection is None:
executor.report.addError(executor.stepName,
self.code, self.desc, msg)
else:
if not hasattr(errSection, self.desc):
executor.report.addError(executor.stepName,
self.code, self.desc, msg)
print(executor.report.report.errors)
return
def testChecksum(self):
"""
Test file checksums calculation
"""
filename = os.path.join(self.testDir, 'fileInfo.test')
with open(filename, 'w') as fObj:
fObj.write("")
(adler32, cksum) = FileTools.calculateChecksums(filename=filename)
self.assertEqual(adler32, "00000001")
self.assertEqual(cksum, "4294967295")
silly = "This is a rather ridiculous string"
with open(filename, 'w') as fObj:
fObj.write(silly * 100001)
(adler32, cksum) = FileTools.calculateChecksums(filename=filename)
self.assertEqual(adler32, "827db5b1")
self.assertEqual(cksum, "3774692924")
return
def __call__(self, errCode, executor, **args):
print("%s Diagnostic Handler invoked" % self.__class__.__name__)
msg = "Exit %s: %s Exception from cmsRun" % (self.code, self.desc)
jobRepXml = os.path.join(executor.step.builder.workingDir,
executor.step.output.jobReport)
if os.path.exists(jobRepXml):
# job report XML exists, load the exception information from it
try:
executor.report.parse(jobRepXml)
except FwkJobReportException:
# Job report is bad, the parse already puts a 50115 in the file
pass
reportStep = executor.report.retrieveStep(executor.stepName)
reportStep.status = self.code
errLog = os.path.join(os.path.dirname(jobRepXml),
'%s-stderr.log' % (executor.stepName))
outLog = os.path.join(os.path.dirname(jobRepXml),
'%s-stdout.log' % (executor.stepName))
if os.path.exists(errLog):
logTail = FileTools.tail(errLog, DEFAULT_TAIL_LINES_FROM_LOG)
msg += '\n Adding last %s lines of CMSSW stderr:\n' % DEFAULT_TAIL_LINES_FROM_LOG
msg += logTail
if os.path.exists(outLog):
logTail = FileTools.tail(outLog, DEFAULT_TAIL_LINES_FROM_LOG)
msg += '\n Adding last %s lines of CMSSW stdout:\n' % DEFAULT_TAIL_LINES_FROM_LOG
msg += logTail
# make sure the report has the error in it
errSection = getattr(executor.report.report, "errors", None)
if errSection == None:
executor.report.addError(executor.stepName,
self.code, self.desc, msg)
else:
if not hasattr(errSection, self.desc):
executor.report.addError(executor.stepName,
self.code, self.desc, msg)
print(executor.report.report.errors)
return
def test_tail(self):
"""
_tail_
Can we tail a file?
"""
a = "a\nb\nc\nd\ne\nf\ng\nh\ni\nj\nk\nl\nm\nn\no\np\n"
f = open('tmpfile.tmp', 'w')
f.write(a)
f.close()
self.assertEqual(FileTools.tail('tmpfile.tmp', 10), "g\nh\ni\nj\nk\nl\nm\nn\no\np\n")
self.assertEqual(FileTools.tail('tmpfile.tmp', 2), "o\np\n")
os.remove('tmpfile.tmp')
return
def test_tail(self):
"""
_tail_
Can we tail a file?
"""
a = "a\nb\nc\nd\ne\nf\ng\nh\ni\nj\nk\nl\nm\nn\no\np\n"
f = open('tmpfile.tmp', 'w')
f.write(a)
f.close()
self.assertEqual(FileTools.tail('tmpfile.tmp', 10), "g\nh\ni\nj\nk\nl\nm\nn\no\np\n")
self.assertEqual(FileTools.tail('tmpfile.tmp', 2), "o\np\n")
os.remove('tmpfile.tmp')
return
def test_fileInfo(self):
"""
_fileInfo_
Test for basic file info
"""
silly = "This is a rather ridiculous string"
filename = os.path.join(self.testDir, 'fileInfo.test')
with open(filename, 'w') as fObj:
fObj.write(silly)
info = FileTools.getFileInfo(filename=filename)
self.assertEqual(info['Name'], filename)
self.assertEqual(info['Size'], 34)
return
def test_fileInfo(self):
"""
_fileInfo_
Test for basic file info
"""
silly = "This is a rather ridiculous string"
filename = os.path.join(self.testDir, 'fileInfo.test')
f = open(filename, 'w')
f.write(silly)
f.close()
info = FileTools.getFileInfo(filename=filename)
self.assertEqual(info['Name'], filename)
self.assertEqual(info['Size'], 34)
return
def __call__(self, errCode, executor, **args):
"""
_operator()_
Look for the XML job report, try and read it and extract the error information from it
"""
jobRepXml = os.path.join(executor.step.builder.workingDir,
executor.step.output.jobReport)
errLog = os.path.join(os.path.dirname(jobRepXml),
'%s-stderr.log' % (executor.stepName))
outLog = os.path.join(os.path.dirname(jobRepXml),
'%s-stdout.log' % (executor.stepName))
addOn = '\n'
if os.path.exists(errLog):
logTail = FileTools.tail(errLog, 10)
addOn += '\nAdding last ten lines of CMSSW stderr:\n'
addOn += logTail
else:
logging.error("No stderr from CMSSW")
logging.error(os.listdir(os.path.basename(jobRepXml)))
if os.path.exists(outLog):
logTail = FileTools.tail(outLog, DEFAULT_TAIL_LINES_FROM_LOG)
msg = '\n Adding last %s lines of CMSSW stdout:\n' % DEFAULT_TAIL_LINES_FROM_LOG
msg += logTail
# Add the error we were sent
ex = args.get('ExceptionInstance', None)
executor.report.addError(executor.stepName,
errCode, "CMSSWStepFailure", msg + str(ex))
if not os.path.exists(jobRepXml):
# no report => Error
msg = "No Job Report Found: %s" % jobRepXml
executor.report.addError(executor.stepName,
50115, "MissingJobReport", msg)
return
# job report XML exists, load the exception information from it
try:
executor.report.parse(jobRepXml)
except FwkJobReportException:
# Job report is bad, the parse already puts a 50115 in the file
# just go on
pass
# make sure the report has the error in it
errSection = getattr(executor.report.report, "errors", None)
if errSection == None:
msg = "Job Report contains no error report, but cmsRun exited non-zero: %s" % errCode
msg += addOn
executor.report.addError(executor.stepName,
50116, "MissingErrorReport", msg)
return
else:
# check exit code in report is non zero
if executor.report.report.status == 0:
msg = "Job Report contains no error report, but cmsRun exited non-zero: %s" % errCode
msg += addOn
executor.report.addError(executor.stepName,
50116, "MissingErrorReport", msg)
else:
msg = "Adding extra error in order to hold error report"
msg += addOn
executor.report.addError(executor.stepName,
99999, "ErrorLoggingAddition", msg)
return
def complete(self, jobs):
"""
Do any completion work required
In this case, look for a returned logfile
"""
for job in jobs:
if job.get('cache_dir', None) is None or job.get('retry_count', None) is None:
# Then we can't do anything
logging.error("Can't find this job's cache_dir or retry count: %s", job)
continue
reportName = os.path.join(job['cache_dir'], 'Report.%i.pkl' % job['retry_count'])
if os.path.isfile(reportName) and os.path.getsize(reportName) > 0:
# everything in order, move on
continue
elif os.path.isdir(reportName):
# Then something weird has happened. Report error, do nothing
logging.error("The job report for job with id %s and gridid %s is a directory", job['id'],
job['gridid'])
logging.error("Ignoring this, but this is very strange")
else:
logging.error("No job report for job with id %s and gridid %s", job['id'], job['gridid'])
if os.path.isfile(reportName):
os.remove(reportName)
# create a report from scratch
condorReport = Report()
logOutput = 'Could not find jobReport\n'
if os.path.isdir(job['cache_dir']):
condorErr = "condor.%s.err" % job['gridid']
condorOut = "condor.%s.out" % job['gridid']
condorLog = "condor.%s.log" % job['gridid']
exitCode = 99303
exitType = "NoJobReport"
for condorFile in [condorErr, condorOut, condorLog]:
condorFilePath = os.path.join(job['cache_dir'], condorFile)
logOutput += "\n========== %s ==========\n" % condorFile
if os.path.isfile(condorFilePath):
logTail = FileTools.tail(condorFilePath, 50)
logOutput += 'Adding end of %s to error message:\n\n' % condorFile
logOutput += logTail
logOutput += '\n\n'
if condorFile == condorLog:
# for condor log, search for the information
for matchObj in getIterMatchObjectOnRegexp(condorFilePath, CONDOR_LOG_FILTER_REGEXP):
condorReason = matchObj.group("Reason")
if condorReason:
logOutput += condorReason
if "SYSTEM_PERIODIC_REMOVE" in condorReason or "via condor_rm" in condorReason:
exitCode = 99400
exitType = "RemovedByGLIDEIN"
else:
exitCode = 99401
siteName = matchObj.group("Site")
if siteName:
condorReport.data.siteName = siteName
else:
condorReport.data.siteName = "NoReportedSite"
else:
for matchObj in getIterMatchObjectOnRegexp(condorFilePath, WMEXCEPTION_REGEXP):
errMsg = matchObj.group('WMException')
if errMsg:
logOutput += "\n\n%s\n" % errMsg
errMsg = matchObj.group('ERROR')
if errMsg:
logOutput += "\n\n%s\n" % errMsg
logOutput += '\n\n'
condorReport.addError(exitType, exitCode, exitType, logOutput)
else:
msg = "Serious Error in Completing condor job with id %s!\n" % job['id']
msg += "Could not find jobCache directory %s\n" % job['cache_dir']
msg += "Creating a new cache_dir for failed job report\n"
logging.error(msg)
os.makedirs(job['cache_dir'])
condorReport.addError("NoJobReport", 99304, "NoCacheDir", logOutput)
condorReport.save(filename=reportName)
logging.debug("Created failed job report for job with id %s and gridid %s", job['id'], job['gridid'])
return
def complete(self, jobs):
"""
Do any completion work required
In this case, look for a returned logfile
"""
for job in jobs:
if job.get('cache_dir', None) is None or job.get('retry_count', None) is None:
# Then we can't do anything
logging.error("Can't find this job's cache_dir or retry count: %s", job)
continue
reportName = os.path.join(job['cache_dir'], 'Report.%i.pkl' % job['retry_count'])
if os.path.isfile(reportName) and os.path.getsize(reportName) > 0:
# everything in order, move on
continue
elif os.path.isdir(reportName):
# Then something weird has happened. Report error, do nothing
logging.error("The job report for job with id %s and gridid %s is a directory", job['id'],
job['gridid'])
logging.error("Ignoring this, but this is very strange")
else:
logging.error("No job report for job with id %s and gridid %s", job['id'], job['gridid'])
if os.path.isfile(reportName):
os.remove(reportName)
# create a report from scratch
condorReport = Report()
logOutput = 'Could not find jobReport\n'
if os.path.isdir(job['cache_dir']):
condorErr = "condor.%s.err" % job['gridid']
condorOut = "condor.%s.out" % job['gridid']
condorLog = "condor.%s.log" % job['gridid']
exitCode = 99303
exitType = "NoJobReport"
for condorFile in [condorErr, condorOut, condorLog]:
condorFilePath = os.path.join(job['cache_dir'], condorFile)
logOutput += "\n========== %s ==========\n" % condorFile
if os.path.isfile(condorFilePath):
logTail = FileTools.tail(condorFilePath, 50)
logOutput += 'Adding end of %s to error message:\n\n' % condorFile
logOutput += logTail
logOutput += '\n\n'
if condorFile == condorLog:
# for condor log, search for the information
for matchObj in getIterMatchObjectOnRegexp(condorFilePath, CONDOR_LOG_FILTER_REGEXP):
condorReason = matchObj.group("Reason")
if condorReason:
logOutput += condorReason
if "SYSTEM_PERIODIC_REMOVE" in condorReason or "via condor_rm" in condorReason:
exitCode = 99400
exitType = "RemovedByGLIDEIN"
else:
exitCode = 99401
siteName = matchObj.group("Site")
if siteName:
condorReport.data.siteName = siteName
else:
condorReport.data.siteName = "NoReportedSite"
else:
for matchObj in getIterMatchObjectOnRegexp(condorFilePath, WMEXCEPTION_REGEXP):
errMsg = matchObj.group('WMException')
if errMsg:
logOutput += "\n\n%s\n" % errMsg
errMsg = matchObj.group('ERROR')
if errMsg:
logOutput += "\n\n%s\n" % errMsg
logOutput += '\n\n'
condorReport.addError(exitType, exitCode, exitType, logOutput)
else:
msg = "Serious Error in Completing condor job with id %s!\n" % job['id']
msg += "Could not find jobCache directory %s\n" % job['cache_dir']
msg += "Creating a new cache_dir for failed job report\n"
logging.error(msg)
os.makedirs(job['cache_dir'])
condorReport.addError("NoJobReport", 99304, "NoCacheDir", logOutput)
condorReport.save(filename=reportName)
logging.debug("Created failed job report for job with id %s and gridid %s", job['id'], job['gridid'])
return
def test_getFullPath(self):
fullPath = FileTools.getFullPath("cd")
#assuming there is path for cd
self.assertIsNotNone(fullPath)
fullPath = FileTools.getFullPath("this_shouldnt_be")
self.assertEqual(fullPath, None)
def test_getFullPath(self):
fullPath = FileTools.getFullPath("cd")
#assuming there is path for cd
self.assertIsNotNone(fullPath)
fullPath = FileTools.getFullPath("this_shouldnt_be")
self.assertEqual(fullPath, None)
