def handle_edit_action(self, action, data):
if form.applyChanges(self.context, self.form_fields, data,
self.adapters):
self.status = _("Changes saved.")
self._on_save(data)
else:
self.status = _("No changes made.")
def handle_cancel_action(self, action, data):
IStatusMessage(self.request).addStatusMessage(_("Changes canceled."),
type="info")
url = getMultiAdapter((self.context, self.request),
name='absolute_url')()
self.request.response.redirect(url)
return ''
def action_save(self, action, data):
"""
2008-04-22 one question remains. how to use the portal factory tool. need to move the object out of the portal_factory
"""
if form.applyChanges(
self.context, self.form_fields, data, self.adapters):
context = aq_inner(self.context)
newId = data['title'].replace(' ','-')
newId = newId.replace('/', '-')
#newId = context.generateNewId()
#context.invokeFactory(id=newId, type_name='Phenotype')
#new_context = getattr(context, newId)
#import sys
#sys.stderr.write("id: %s, title: %s, newId: %s.\n"%(context.id, context.title, newId))
#sys.stderr.write("type(newId): %s, dir(newId): %s.\n"%(repr(type(newId)), repr(dir(newId)) ))
#use below to decide if this is first time being created by portal_factory or followup editing
grandpa = aq_parent(aq_parent(context))
if grandpa.id=='portal_factory':
#phenotype.generateNewId()
#2008-04-23. below is probably a simpler line. don't know where i got it.
#new_context = context.portal_factory.doCreate(context, id)
#2008-04-23. got the clue from FactoryTool.doCreate() of Products/CMFPlone/FactoryTool.py
type_name = aq_parent(context).id # get the ID of the TempFolder
folder = aq_parent(aq_parent(aq_parent(context)))
folder.invokeFactory(id=newId, type_name=type_name)
new_context = getattr(folder, newId)
new_context.setId(str(newId)) #type of newId is unicode. and str is required for catalog
#manually set all these properties
new_context.title = data['title']
new_context.description = data['description']
new_context.QC_method_id = data['QC_method_id']
new_context.input_dir = data['input_dir']
else:
new_context = context
new_context.setId(str(newId))
#import pdb
#pdb.set_trace()
new_context.short_name = unicode(str(new_context.QC_method_id))
settings = getUtility(IStockDatabaseSettings, name='variation.stockdatabasesettings')
from variation.src.QC_250k import QC_250k
QC_method_id2cmp_data_filename = {1: '/usr/local/home_ubuntu/crocea/script/variation/data/2010/data_2010_x_250k_y0001.tsv',
2: '/usr/local/home_ubuntu/crocea/script/variation/data/perlegen/data_perlegen_ecotype_id_x_250k_y0101.tsv',
3: '/usr/local/home_ubuntu/crocea/script/variation/stock20080403/data_y10001101.tsv'}
from pymodule import ProcessOptions
argv_list = ['QC_250k.py', '-i', QC_method_id2cmp_data_filename[int(new_context.QC_method_id)], \
'-n', new_context.input_dir, '-m', new_context.QC_method_id, '-u', settings.username, '-p', settings.password]
po = ProcessOptions(argv_list, QC_250k.option_default_dict, error_doc=QC_250k.__doc__)
#instance = QC_250k(**po.long_option2value)
#new_context.row_id2NA_mismatch_rate = instance.plone_run()
#del instance
zope.event.notify(
ObjectModifiedEvent(new_context)
)
# TODO: Needs locale support. See also Five.form.EditView.
self.status = _(
"Updated on ${date_time}",
mapping={'date_time': str(datetime.utcnow())}
)
#confirm = u"Phenotype Checked Out."
#IStatusMessage(self.request).addStatusMessage(confirm, type='info')
#04/18/08 old way of handling from the (The Definitive Guide to Plone)
#self.state.set(context=new_context, portal_status_message="Phenotype Checked out.")
self.request.response.redirect(new_context.absolute_url())
else:
#use below to decide if this is first time being created by portal_factory or followup editing
context = aq_inner(self.context)
grandpa = aq_parent(aq_parent(context))
if grandpa.id=='portal_factory':
context = aq_parent(aq_parent(aq_parent(aq_inner(self.context))))
confirm = u"Cancelled."
IStatusMessage(self.request).addStatusMessage(confirm, type='info')
self.request.response.redirect(context.absolute_url())
def action_save(self, action, data):
"""
2008-04-22 one question remains. how to use the portal factory tool. need to move the object out of the portal_factory
"""
if form.applyChanges(
self.context, self.form_fields, data, self.adapters):
#method_id = method_id_short_name.split(' ')[0]
#method_id = int(method_id)
context = aq_inner(self.context)
newId = data['title'].replace(' ','-')
newId = newId.replace('/', '-')
#newId = context.generateNewId()
#context.invokeFactory(id=newId, type_name='Phenotype')
#new_context = getattr(context, newId)
#import sys
#sys.stderr.write("id: %s, title: %s, newId: %s.\n"%(context.id, context.title, newId))
#sys.stderr.write("type(newId): %s, dir(newId): %s.\n"%(repr(type(newId)), repr(dir(newId)) ))
#use below to decide if this is first time being created by portal_factory or followup editing
grandpa = aq_parent(aq_parent(context))
if grandpa.id=='portal_factory':
#phenotype.generateNewId()
#2008-04-23. below is probably a simpler line. don't know where i got it.
#new_context = context.portal_factory.doCreate(context, id)
#2008-04-23. got the clue from FactoryTool.doCreate() of Products/CMFPlone/FactoryTool.py
type_name = aq_parent(context).id # get the ID of the TempFolder
folder = aq_parent(aq_parent(aq_parent(context)))
folder.invokeFactory(id=newId, type_name=type_name)
new_context = getattr(folder, newId)
new_context.setId(str(newId)) #type of newId is unicode. and str is required for catalog
#manually set all these properties
new_context.title = data['title']
new_context.description = data['description']
new_context.method_id_ls = data['method_id_ls']
else:
new_context = context
new_context.setId(str(newId))
locator = getUtility(IDBLocator)
new_context.phenotype_obj_ls = locator.get_phenotype_obj_ls(new_context.method_id_ls)
zope.event.notify(
ObjectModifiedEvent(new_context)
)
# TODO: Needs locale support. See also Five.form.EditView.
self.status = _(
"Phenotype Updated on ${date_time}",
mapping={'date_time': str(datetime.utcnow())}
)
#confirm = u"Phenotype Checked Out."
#IStatusMessage(self.request).addStatusMessage(confirm, type='info')
#04/18/08 old way of handling from the (The Definitive Guide to Plone)
#self.state.set(context=new_context, portal_status_message="Phenotype Checked out.")
self.request.response.redirect(new_context.absolute_url())
else:
#use below to decide if this is first time being created by portal_factory or followup editing
context = aq_inner(self.context)
grandpa = aq_parent(aq_parent(context))
if grandpa.id=='portal_factory':
context = aq_parent(aq_parent(aq_parent(aq_inner(self.context))))
confirm = u"Phenotype Unchanged."
IStatusMessage(self.request).addStatusMessage(confirm, type='info')
self.request.response.redirect(context.absolute_url())
from Products.ATContentTypes.content import folder
from Products.ATContentTypes.content.schemata import finalizeATCTSchema
from Variation.SNP250k.interfaces import IVariationFolder
from Variation.SNP250k.config import PROJECTNAME
from Variation.SNP250k import VariationMessageFactory as _
VariationFolderSchema = folder.ATBTreeFolderSchema.copy() + atapi.Schema((
atapi.TextField('text',
required=False,
searchable=True,
storage=atapi.AnnotationStorage(),
default_output_type='text/html',
allowable_content_types = ('text/plain', 'text/restructured', 'text/html',),
widget=atapi.RichWidget(label=_(u"Descriptive text"),
description=_(u""),
rows=25,
allow_file_upload=True),
),
))
VariationFolderSchema['title'].storage = atapi.AnnotationStorage()
VariationFolderSchema['description'].storage = atapi.AnnotationStorage()
finalizeATCTSchema(VariationFolderSchema, folderish=True, moveDiscussion=False)
class VariationFolder(folder.ATBTreeFolder):
"""Contains multiple films.
"""
implements(IVariationFolder)