def postProcess(self, _edObject=None):
EDPluginExecProcessScript.postProcess(self)
EDVerbose.DEBUG("EDPluginExecAbsCalcv0_1.postProcess")
# Create some output data
self.__xsDataResult = XSDataResultAbsCalc()
self.parseAbsCalcOutputFile()
self.setDataOutput(self.__xsDataResult)
def postProcess(self, _edObject = None):
EDPluginExecProcessScript.postProcess(self)
EDVerbose.DEBUG("EDPluginExecAbsCalcv0_1.postProcess")
# Create some output data
self.__xsDataResult = XSDataResultAbsCalc()
self.parseAbsCalcOutputFile()
self.setDataOutput(self.__xsDataResult)
class EDPluginExecAbsCalcv0_1(EDPluginExecProcessScript ):
"""
[To be replaced with a description of EDPluginExecTemplatev10]
"""
def __init__(self ):
"""
"""
EDPluginExecProcessScript.__init__(self )
self.setXSDataInputClass(XSDataInputAbsCalc)
self.__xsDataResult = None
self.__iNumCompounds = None;
self.__lCompounds = []
self.__tBuffer = {}
self.__strEdge = None
self.__fTransAfterEdge = None
self.__fDiameterDisk = None
def checkParameters(self):
"""
Checks the mandatory parameters.
"""
EDVerbose.DEBUG("EDPluginExecAbsCalcv0_1.checkParameters")
self.checkMandatoryParameters(self.getDataInput(),"Data Input is None")
self.checkAbsTable()
self.__iNumCompounds = int(self.getDataInput().getNumCompounds().getValue())
for _itemCompound in self.getDataInput().getCompoundList():
_tmpCompound = {}
_tmpCompound['formula'] = _itemCompound.getFormula().getValue()
_tmpCompound['fraction'] = _itemCompound.getFraction().getValue()
_tmpCompound['density'] = _itemCompound.getDensity().getValue()
self.__lCompounds.append(_tmpCompound)
self.__tBuffer['formula'] = self.getDataInput().getBuffer().getFormula().getValue()
self.__tBuffer['density'] = self.getDataInput().getBuffer().getDensity().getValue()
self.__strEdge = self.getDataInput().getEdge().getValue()
self.__fTransAfterEdge = float(self.getDataInput().getTransAfterEdge().getValue())
self.__fDiameterDisk = float(self.getDataInput().getDiameterDisk().getValue())
def checkAbsTable(self):
_pluginConfiguration = self.getConfiguration()
_strAbsTable = EDConfiguration.getStringParamValue(_pluginConfiguration, 'absTable')
if os.path.isfile(_strAbsTable):
shutil.copy(_strAbsTable, self.getWorkingDirectory())
else:
EDVerbose.ERROR("EDPluginExecAbsCalcv0_1.checkAbsTable Couldn't find abstable file")
self.setFailure()
def preProcess(self, _edObject = None):
EDPluginExecProcessScript.preProcess(self)
EDVerbose.DEBUG("EDPluginExecAbsCalcv0_1.preProcess")
self.generateAbsCalcScript()
def process(self, _edObject = None):
EDPluginExecProcessScript.process(self)
EDVerbose.DEBUG("EDPluginExecAbsCalcv0_1.process")
def postProcess(self, _edObject = None):
EDPluginExecProcessScript.postProcess(self)
EDVerbose.DEBUG("EDPluginExecAbsCalcv0_1.postProcess")
# Create some output data
self.__xsDataResult = XSDataResultAbsCalc()
self.parseAbsCalcOutputFile()
self.setDataOutput(self.__xsDataResult)
def generateAbsCalcScript(self):
EDVerbose.DEBUG("*** EDPluginExecGnomv0_1.generateGnomScript")
self.setScriptCommandline("")
commandList = ['1', '1', str(self.__iNumCompounds), '1']
map(commandList.extend, [[tmp['formula'], str(tmp['fraction']), str(tmp['density'])] for tmp in self.__lCompounds])
commandList.extend([self.__tBuffer['formula'], str(self.__tBuffer['density'])])
commandList.extend([self.__strEdge, str(self.__fTransAfterEdge), str(self.__fDiameterDisk), '1'])
self.addListCommandExecution('\n'.join(commandList))
def parseAbsCalcOutputFile(self):
_weights = {}
_tmpDensitySample = None
_tmpTransBeforeEdge = None
_tmpTransAfterEdge = None
_tmpDiskThickness = None
_tmpDiskRadius = None
logFile = EDUtilsFile.readFile(os.path.join(self.getWorkingDirectory(), "abs.out"))
logLines = logFile.splitlines()
for line in logLines:
listLine = [tmp for tmp in line.split(' ') if tmp]
if tuple(listLine[0:2]) == ('SAMPLE', 'DENSITY'):
_tmpDensitySample = float(listLine[-1])
if tuple(listLine[0:2]) == ('WEIGHT', 'OF'):
_weights[' '.join(listLine[2:-3])] = float(listLine[-1])
if tuple(listLine[0:3]) == ('TRANSMISSION', 'BEFORE', 'EDGE'):
try:
_tmpTransBeforeEdge = float(listLine[-1])
except Exception:
_tmpTransBeforeEdge = -1
if tuple(listLine[0:3]) == ('TRANSMISSION', 'AFTER', 'EDGE'):
try:
_tmpTransAfterEdge = float(listLine[-1])
except Exception:
_tmpTransAfterEdge = -1
if tuple(listLine[0:2]) == ('DISC', 'THICKNESS'):
_tmpDiskThickness = float(listLine[-1][1:-1])
if tuple(listLine[0:2]) == ('DISC', 'RADIUS'):
_tmpDiskRadius = float(listLine[-1])
_tmpCompounds = self.getDataInput().getCompoundList()
for _tmpCompound in _tmpCompounds:
_tmpCompound.setWeight(XSDataFloat(_weights[str(_tmpCompound.getFormula().getValue()).upper()]))
self.__xsDataResult.setCompoundList(_tmpCompounds)
_tmpBuffer = self.getDataInput().getBuffer()
_tmpBuffer.setWeight(XSDataFloat(_weights[_tmpBuffer.getFormula().getValue()]))
self.__xsDataResult.setBuffer(_tmpBuffer)
self.__xsDataResult.setDensitySample(XSDataFloat(_tmpDensitySample))
self.__xsDataResult.setWeightSample(XSDataFloat(_weights['SAMPLE']))
self.__xsDataResult.setTransBeforeEdge(XSDataFloat(_tmpTransBeforeEdge))
self.__xsDataResult.setTransAfterEdge(XSDataFloat(_tmpTransAfterEdge))
self.__xsDataResult.setThicknessDisk(XSDataFloat(_tmpDiskThickness))
self.__xsDataResult.setRadiusDisk(XSDataFloat(_tmpDiskRadius))
def generateExecutiveSummary(self,__edPlugin=None):
abscalcLog = open(os.path.join(self.getWorkingDirectory(), "abs.out"))
for line in abscalcLog:
self.addExecutiveSummaryLine(line)
class EDPluginExecAbsCalcv0_1(EDPluginExecProcessScript):
"""
[To be replaced with a description of EDPluginExecTemplatev10]
"""
def __init__(self):
"""
"""
EDPluginExecProcessScript.__init__(self)
self.setXSDataInputClass(XSDataInputAbsCalc)
self.__xsDataResult = None
self.__iNumCompounds = None
self.__lCompounds = []
self.__tBuffer = {}
self.__strEdge = None
self.__fTransAfterEdge = None
self.__fDiameterDisk = None
def checkParameters(self):
"""
Checks the mandatory parameters.
"""
EDVerbose.DEBUG("EDPluginExecAbsCalcv0_1.checkParameters")
self.checkMandatoryParameters(self.getDataInput(),
"Data Input is None")
self.checkAbsTable()
self.__iNumCompounds = int(
self.getDataInput().getNumCompounds().getValue())
for _itemCompound in self.getDataInput().getCompoundList():
_tmpCompound = {}
_tmpCompound['formula'] = _itemCompound.getFormula().getValue()
_tmpCompound['fraction'] = _itemCompound.getFraction().getValue()
_tmpCompound['density'] = _itemCompound.getDensity().getValue()
self.__lCompounds.append(_tmpCompound)
self.__tBuffer['formula'] = self.getDataInput().getBuffer().getFormula(
).getValue()
self.__tBuffer['density'] = self.getDataInput().getBuffer().getDensity(
).getValue()
self.__strEdge = self.getDataInput().getEdge().getValue()
self.__fTransAfterEdge = float(
self.getDataInput().getTransAfterEdge().getValue())
self.__fDiameterDisk = float(
self.getDataInput().getDiameterDisk().getValue())
def checkAbsTable(self):
_pluginConfiguration = self.getConfiguration()
_strAbsTable = EDConfiguration.getStringParamValue(
_pluginConfiguration, 'absTable')
if os.path.isfile(_strAbsTable):
shutil.copy(_strAbsTable, self.getWorkingDirectory())
else:
EDVerbose.ERROR(
"EDPluginExecAbsCalcv0_1.checkAbsTable Couldn't find abstable file"
)
self.setFailure()
def preProcess(self, _edObject=None):
EDPluginExecProcessScript.preProcess(self)
EDVerbose.DEBUG("EDPluginExecAbsCalcv0_1.preProcess")
self.generateAbsCalcScript()
def process(self, _edObject=None):
EDPluginExecProcessScript.process(self)
EDVerbose.DEBUG("EDPluginExecAbsCalcv0_1.process")
def postProcess(self, _edObject=None):
EDPluginExecProcessScript.postProcess(self)
EDVerbose.DEBUG("EDPluginExecAbsCalcv0_1.postProcess")
# Create some output data
self.__xsDataResult = XSDataResultAbsCalc()
self.parseAbsCalcOutputFile()
self.setDataOutput(self.__xsDataResult)
def generateAbsCalcScript(self):
EDVerbose.DEBUG("*** EDPluginExecGnomv0_1.generateGnomScript")
self.setScriptCommandline("")
commandList = ['1', '1', str(self.__iNumCompounds), '1']
map(commandList.extend,
[[tmp['formula'],
str(tmp['fraction']),
str(tmp['density'])] for tmp in self.__lCompounds])
commandList.extend(
[self.__tBuffer['formula'],
str(self.__tBuffer['density'])])
commandList.extend([
self.__strEdge,
str(self.__fTransAfterEdge),
str(self.__fDiameterDisk), '1'
])
self.addListCommandExecution('\n'.join(commandList))
def parseAbsCalcOutputFile(self):
_weights = {}
_tmpDensitySample = None
_tmpTransBeforeEdge = None
_tmpTransAfterEdge = None
_tmpDiskThickness = None
_tmpDiskRadius = None
logFile = EDUtilsFile.readFile(
os.path.join(self.getWorkingDirectory(), "abs.out"))
logLines = logFile.splitlines()
for line in logLines:
listLine = [tmp for tmp in line.split(' ') if tmp]
if tuple(listLine[0:2]) == ('SAMPLE', 'DENSITY'):
_tmpDensitySample = float(listLine[-1])
if tuple(listLine[0:2]) == ('WEIGHT', 'OF'):
_weights[' '.join(listLine[2:-3])] = float(listLine[-1])
if tuple(listLine[0:3]) == ('TRANSMISSION', 'BEFORE', 'EDGE'):
try:
_tmpTransBeforeEdge = float(listLine[-1])
except Exception:
_tmpTransBeforeEdge = -1
if tuple(listLine[0:3]) == ('TRANSMISSION', 'AFTER', 'EDGE'):
try:
_tmpTransAfterEdge = float(listLine[-1])
except Exception:
_tmpTransAfterEdge = -1
if tuple(listLine[0:2]) == ('DISC', 'THICKNESS'):
_tmpDiskThickness = float(listLine[-1][1:-1])
if tuple(listLine[0:2]) == ('DISC', 'RADIUS'):
_tmpDiskRadius = float(listLine[-1])
_tmpCompounds = self.getDataInput().getCompoundList()
for _tmpCompound in _tmpCompounds:
_tmpCompound.setWeight(
XSDataFloat(_weights[str(
_tmpCompound.getFormula().getValue()).upper()]))
self.__xsDataResult.setCompoundList(_tmpCompounds)
_tmpBuffer = self.getDataInput().getBuffer()
_tmpBuffer.setWeight(
XSDataFloat(_weights[_tmpBuffer.getFormula().getValue()]))
self.__xsDataResult.setBuffer(_tmpBuffer)
self.__xsDataResult.setDensitySample(XSDataFloat(_tmpDensitySample))
self.__xsDataResult.setWeightSample(XSDataFloat(_weights['SAMPLE']))
self.__xsDataResult.setTransBeforeEdge(
XSDataFloat(_tmpTransBeforeEdge))
self.__xsDataResult.setTransAfterEdge(XSDataFloat(_tmpTransAfterEdge))
self.__xsDataResult.setThicknessDisk(XSDataFloat(_tmpDiskThickness))
self.__xsDataResult.setRadiusDisk(XSDataFloat(_tmpDiskRadius))
def generateExecutiveSummary(self, __edPlugin=None):
abscalcLog = open(os.path.join(self.getWorkingDirectory(), "abs.out"))
for line in abscalcLog:
self.addExecutiveSummaryLine(line)