def testCheckParameters(self):
     EDVerbose.DEBUG("EDTestCasePluginUnitControlDiffractionCTv1_0.testCheckParameters")
     xsDataInput = XSDataInputDiffractionCT()
     xsDataImage = XSDataImage()
     xsDataInput.setImage(xsDataImage)
     xsDataFile = XSDataFile()
     xsDataInput.setDestinationDirectory(xsDataFile)
     xsDataInput.setSinogramFileNamePrefix(XSDataString("FakePrefix"))
     xsDataInput.setPowderDiffractionSubdirectory(XSDataString("Powder"))
     edPluginControlDCTPowderIntegration = self.createPlugin()
     edPluginControlDCTPowderIntegration.setDataInput(xsDataInput)
     edPluginControlDCTPowderIntegration.checkParameters()
Esempio n. 2
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    def makeXML(self, filename):
        """Here we create the XML string to be passed to the EDNA plugin from the input filename
        This can / should be modified by the final user
        
        @param filename: full path of the input file
        @type filename: python string representing the path
        @rtype: XML string
        @return: python string  
        """
        bProcessFile = False
        basename = os.path.basename(filename)
        for oneExt in self.listExtensions:
            if basename.endswith(oneExt):
                bProcessFile = True
                break
        if bProcessFile:
            for onePref in self.listExcludedPrefix:
                if basename.startswith(onePref):
                    bProcessFile = False
        if not bProcessFile:
            EDVerbose.screen("Not processing file: %s" % filename)
            return
        xsdimage = XSDataImage()
        xsdimage.setPath(XSDataString(filename))
        xsd = XSDataInputDiffractionCT()
        xsd.setImage(xsdimage)
        xsd.setDestinationDirectory(self.destinationDirectory)
        xsd.setSinogramFileNamePrefix(self.sinogramFileNamePrefix)
        xsd.setPowderDiffractionSubdirectory(
            self.powderDiffractionSubdirectory)
        xsd.setPowderDiffractionFormat(self.powderDiffractionFormat)
        if self.indexOffset is not None and self.fastMotorSteps is not None:
            idx = 0
            basename = list(os.path.splitext(os.path.basename(filename))[0])
            basename.reverse()
            number = ""
            for i in basename:
                if i.isdigit():
                    number = i + number
                else:
                    break
            idx = int(number) - self.indexOffset
            if idx < 0: return

            self.forceInstrument.set_tomo_spec_displ_x(
                XSDataLength(idx % (self.fastMotorSteps + 1)))
            self.forceInstrument.set_tomo_spec_displ_rotation(
                XSDataLength(idx // (self.fastMotorSteps + 1)))
        xsd.setOverrideScanParam(self.forceInstrument)
        xsd.setOverrideImageParam(self.forceImage)

        return xsd.marshal()
 def testCheckParameters(self):
     EDVerbose.DEBUG(
         "EDTestCasePluginUnitControlDiffractionCTv1_0.testCheckParameters")
     xsDataInput = XSDataInputDiffractionCT()
     xsDataImage = XSDataImage()
     xsDataInput.setImage(xsDataImage)
     xsDataFile = XSDataFile()
     xsDataInput.setDestinationDirectory(xsDataFile)
     xsDataInput.setSinogramFileNamePrefix(XSDataString("FakePrefix"))
     xsDataInput.setPowderDiffractionSubdirectory(XSDataString("Powder"))
     edPluginControlDCTPowderIntegration = self.createPlugin()
     edPluginControlDCTPowderIntegration.setDataInput(xsDataInput)
     edPluginControlDCTPowderIntegration.checkParameters()
Esempio n. 4
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    def makeXML(self, filename):
        """Here we create the XML string to be passed to the EDNA plugin from the input filename
        This can / should be modified by the final user
        
        @param filename: full path of the input file
        @type filename: python string representing the path
        @rtype: XML string
        @return: python string  
        """
        bProcessFile = False
        basename = os.path.basename(filename)
        for oneExt in self.listExtensions:
            if basename.endswith(oneExt):
                bProcessFile = True
                break
        if bProcessFile:
            for onePref in self.listExcludedPrefix:
                if basename.startswith(onePref):
                    bProcessFile = False
        if not bProcessFile:
            EDVerbose.screen("Not processing file: %s" % filename)
            return
        xsdimage = XSDataImage()
        xsdimage.setPath(XSDataString(filename))
        xsd = XSDataInputDiffractionCT()
        xsd.setImage(xsdimage)
        xsd.setDestinationDirectory(self.destinationDirectory)
        xsd.setSinogramFileNamePrefix(self.sinogramFileNamePrefix)
        xsd.setPowderDiffractionSubdirectory(self.powderDiffractionSubdirectory)
        xsd.setPowderDiffractionFormat(self.powderDiffractionFormat)
        if self.indexOffset is not None and self.fastMotorSteps is not None:
            idx = 0
            basename = list(os.path.splitext(os.path.basename(filename))[0])
            basename.reverse()
            number = ""
            for i in basename:
                if i.isdigit():
                    number = i + number
                else: break
            idx = int(number) - self.indexOffset
            if idx < 0:return

            self.forceInstrument.set_tomo_spec_displ_x(XSDataLength(idx % (self.fastMotorSteps + 1)))
            self.forceInstrument.set_tomo_spec_displ_rotation(XSDataLength(idx // (self.fastMotorSteps + 1)))
        xsd.setOverrideScanParam(self.forceInstrument)
        xsd.setOverrideImageParam(self.forceImage)

        return xsd.marshal()