def getOutputDataFromDNATableFile(self, _strFileName):
xsDataResultBest = XSDataResultBest()
if os.path.exists(_strFileName):
strDnaTablesXML = self.readProcessFile(_strFileName)
# Fix for MXSUP-1751: Error when parsing broken XML
try:
xsDataDnaTables = dna_tables.parseString(strDnaTablesXML)
except Exception as e:
self.setFailure()
self.error("Parsing of BEST XML file failed: %s" % e)
# Loop through all the tables and fill in the relevant parts of xsDataResultBest
if not self.isFailure():
xsDataStringStrategyOption = self.getDataInput().getStrategyOption()
if (xsDataStringStrategyOption is not None):
strStrategyOption = xsDataStringStrategyOption.getValue()
if (strStrategyOption.find("-DamPar") != -1):
xsDataResultBest = self.getDamParOutputFromDNATables(xsDataDnaTables)
elif (strStrategyOption.find("-Bonly") != -1):
xsDataResultBest = self.getBonlyOutputFromDNATables(xsDataDnaTables)
else:
xsDataResultBest = self.getDataCollectionOutputDataFromDNATables(xsDataDnaTables)
else:
xsDataResultBest = self.getDataCollectionOutputDataFromDNATables(xsDataDnaTables)
return xsDataResultBest
def getOutputDataFromDNATableFile(self, _strFileName):
xsDataResultBest = XSDataResultBest()
if os.path.exists(_strFileName):
strDnaTablesXML = self.readProcessFile(_strFileName)
# Fix for MXSUP-1751: Error when parsing broken XML
try:
xsDataDnaTables = dna_tables.parseString(strDnaTablesXML)
except Exception as e:
self.setFailure()
self.error("Parsing of BEST XML file failed: %s" % e)
# Loop through all the tables and fill in the relevant parts of xsDataResultBest
if not self.isFailure():
xsDataStringStrategyOption = self.getDataInput(
).getStrategyOption()
if (xsDataStringStrategyOption is not None):
strStrategyOption = xsDataStringStrategyOption.getValue()
if (strStrategyOption.find("-DamPar") != -1):
xsDataResultBest = self.getDamParOutputFromDNATables(
xsDataDnaTables)
elif (strStrategyOption.find("-Bonly") != -1):
xsDataResultBest = self.getBonlyOutputFromDNATables(
xsDataDnaTables)
else:
xsDataResultBest = self.getDataCollectionOutputDataFromDNATables(
xsDataDnaTables)
else:
xsDataResultBest = self.getDataCollectionOutputDataFromDNATables(
xsDataDnaTables)
return xsDataResultBest
def getOutputDataFromDNATableFile(self, _strFileName):
strDnaTablesXML = self.readProcessFile(_strFileName)
xsDataDnaTables = dna_tables.parseString(strDnaTablesXML)
xsDataResultBest = XSDataResultBest()
# Loop through all the tables and fill in the relevant parts of xsDataResultBest
xsDataStringStrategyOption = self.getDataInput().getStrategyOption()
if (xsDataStringStrategyOption is not None):
strStrategyOption = xsDataStringStrategyOption.getValue()
if (strStrategyOption.find("-DamPar") != -1 ):
xsDataResultBest = self.getDamParOutputFromDNATables(xsDataDnaTables)
elif (strStrategyOption.find("-Bonly") != -1 ):
xsDataResultBest = self.getBonlyOutputFromDNATables(xsDataDnaTables)
else:
xsDataResultBest = self.getDataCollectionOutputDataFromDNATables(xsDataDnaTables)
else:
xsDataResultBest = self.getDataCollectionOutputDataFromDNATables(xsDataDnaTables)
return xsDataResultBest
def getOutputDataFromDNATableFile(self, _strFileName):
strDnaTablesXML = self.readProcessFile(_strFileName)
xsDataDnaTables = dna_tables.parseString(strDnaTablesXML)
xsDataResultBest = XSDataResultBest()
# Loop through all the tables and fill in the relevant parts of xsDataResultBest
xsDataStringStrategyOption = self.getDataInput().getStrategyOption()
if (xsDataStringStrategyOption is not None):
strStrategyOption = xsDataStringStrategyOption.getValue()
if (strStrategyOption.find("-DamPar") != -1):
xsDataResultBest = self.getDamParOutputFromDNATables(
xsDataDnaTables)
elif (strStrategyOption.find("-Bonly") != -1):
xsDataResultBest = self.getBonlyOutputFromDNATables(
xsDataDnaTables)
else:
xsDataResultBest = self.getDataCollectionOutputDataFromDNATables(
xsDataDnaTables)
else:
xsDataResultBest = self.getDataCollectionOutputDataFromDNATables(
xsDataDnaTables)
return xsDataResultBest
