def testExecute(self):
self.run()
# Compare results
strXMLExpected = self.readAndParseFile(self.getReferenceDataOutputFile())
xsDataObtained = self.getPlugin().getDataOutput()
xsDataExpected = XSDataMOSFLMOutputIndexing.parseString(strXMLExpected)
EDAssert.strAlmostEqual(xsDataExpected.marshal(), xsDataObtained.marshal(), \
"(MOSFLM indexing result comparison - expected versus obtained)")
def testExecute(self):
self.run()
# Compare results
strXMLExpected = self.readAndParseFile(
self.getReferenceDataOutputFile())
xsDataObtained = self.getPlugin().getDataOutput()
xsDataExpected = XSDataMOSFLMOutputIndexing.parseString(strXMLExpected)
EDAssert.strAlmostEqual(xsDataExpected.marshal(), xsDataObtained.marshal(), \
"(MOSFLM indexing result comparison - expected versus obtained)", _fAbsError=1000.0)
def testGenerateXSDataIndexingResult(self):
strFilename = "XSDataMOSFLMOutputIndexing_reference.xml"
strPath = os.path.join(self.m_strDataPath, strFilename)
strXMLMOSFLMOutputIndexing = EDUtilsTest.readAndParseFile(strPath)
from XSDataMOSFLMv10 import XSDataMOSFLMOutputIndexing
xsDataMOSFLMOutputIndexing = XSDataMOSFLMOutputIndexing.parseString(strXMLMOSFLMOutputIndexing)
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataIndexingResult = EDHandlerXSDataMOSFLMv10.generateXSDataIndexingResult(xsDataMOSFLMOutputIndexing)
strReferenceFilename = "XSDataIndexingResult_reference.xml"
strReferencePath = os.path.join(self.m_strDataPath, strReferenceFilename)
strXMLIndexingOutputReference = EDUtilsTest.readAndParseFile(strReferencePath)
from XSDataMXv1 import XSDataIndexingResult
xsdataIndexingResultReference = XSDataIndexingResult.parseString(strXMLIndexingOutputReference)
EDAssert.equal(xsdataIndexingResultReference.marshal(), xsDataIndexingResult.marshal())
def testGenerateExecutiveSummary(self):
"""
"""
pluginIndexing = self.createPlugin()
pluginIndexing.setScriptExecutable("cat")
pluginIndexing.configure()
from XSDataMOSFLMv10 import XSDataMOSFLMInputIndexing
from XSDataMOSFLMv10 import XSDataMOSFLMOutputIndexing
strMOSFLMInputIndexingXML = self.readAndParseFile(self.strReferenceDataInputFile)
strMOSFLMOutputIndexingXML = self.readAndParseFile(self.strReferenceDataOutputFile)
xsDataMOSFLMInputIndexing = XSDataMOSFLMInputIndexing.parseString(strMOSFLMInputIndexingXML)
xsDataMOSFLMOutputIndexing = XSDataMOSFLMOutputIndexing.parseString(strMOSFLMOutputIndexingXML)
pluginIndexing.setDataInput(xsDataMOSFLMInputIndexing)
pluginIndexing.setDataOutput(xsDataMOSFLMOutputIndexing)
pluginIndexing.generateExecutiveSummary(pluginIndexing)
pluginIndexing.verboseScreenExecutiveSummary()
self.cleanUp(pluginIndexing)
def testCreateDataMOSFLMOutputIndexing(self):
"""
"""
pluginIndexing = self.createPlugin()
pluginIndexing.setScriptExecutable("cat")
pluginIndexing.configure()
strBaseName = pluginIndexing.getBaseName()
shutil.copyfile(os.path.join(self.strUnitTestDataHome, "EDPluginMOSFLMIndexingv10_outputDnaTables_ok.xml"), os.path.join(pluginIndexing.getWorkingDirectory(), strBaseName + "_dnaTables.xml"))
strNewmatFile = os.path.join(self.strUnitTestDataHome, "EDPluginMOSFLMv10_autoindexMat_ok.txt")
pluginIndexing.setNewmatFileName(strNewmatFile)
xsDataMOSFLMOutputIndexing = pluginIndexing.createDataMOSFLMOutputIndexing()
strReferenceXML = self.readAndParseFile(self.strReferenceDataOutputFile)
xsDataMOSFLMOutputIndexingReference = XSDataMOSFLMOutputIndexing.parseString(strReferenceXML)
#print len( strReferenceXML )
#print len( xsDataMOSFLMOutputIndexing.marshal() )
EDAssert.equal(xsDataMOSFLMOutputIndexingReference.marshal(), xsDataMOSFLMOutputIndexing.marshal())
self.cleanUp(pluginIndexing)
def testGenerateExecutiveSummary(self):
"""
"""
pluginIndexing = self.createPlugin()
pluginIndexing.setScriptExecutable("cat")
pluginIndexing.configure()
from XSDataMOSFLMv10 import XSDataMOSFLMInputIndexing
from XSDataMOSFLMv10 import XSDataMOSFLMOutputIndexing
strMOSFLMInputIndexingXML = self.readAndParseFile(self.strReferenceDataInputFile)
strMOSFLMOutputIndexingXML = self.readAndParseFile(self.strReferenceDataOutputFile)
xsDataMOSFLMInputIndexing = XSDataMOSFLMInputIndexing.parseString(strMOSFLMInputIndexingXML)
xsDataMOSFLMOutputIndexing = XSDataMOSFLMOutputIndexing.parseString(strMOSFLMOutputIndexingXML)
pluginIndexing.setDataInput(xsDataMOSFLMInputIndexing)
pluginIndexing.setDataOutput(xsDataMOSFLMOutputIndexing)
pluginIndexing.generateExecutiveSummary(pluginIndexing)
pluginIndexing.verboseScreenExecutiveSummary()
self.cleanUp(pluginIndexing)
def testCreateDataMOSFLMOutputIndexing(self):
"""
"""
pluginIndexing = self.createPlugin()
pluginIndexing.setScriptExecutable("cat")
pluginIndexing.configure()
strBaseName = pluginIndexing.getBaseName()
shutil.copyfile(os.path.join(self.strUnitTestDataHome, "EDPluginMOSFLMIndexingv10_outputDnaTables_ok.xml"), os.path.join(pluginIndexing.getWorkingDirectory(), strBaseName + "_dnaTables.xml"))
strNewmatFile = os.path.join(self.strUnitTestDataHome, "EDPluginMOSFLMv10_autoindexMat_ok.txt")
pluginIndexing.setNewmatFileName(strNewmatFile)
xsDataMOSFLMOutputIndexing = pluginIndexing.createDataMOSFLMOutputIndexing()
strReferenceXML = self.readAndParseFile(self.strReferenceDataOutputFile)
xsDataMOSFLMOutputIndexingReference = XSDataMOSFLMOutputIndexing.parseString(strReferenceXML)
#print len( strReferenceXML )
#print len( xsDataMOSFLMOutputIndexing.marshal() )
# Replace path to log file since it cannot be determined by the unit test
xsDataMOSFLMOutputIndexing.setPathToLogFile(XSDataFile(XSDataString("MOSFLMIndexingv10.log")))
EDAssert.equal(xsDataMOSFLMOutputIndexingReference.marshal(), xsDataMOSFLMOutputIndexing.marshal())
self.cleanUp(pluginIndexing)
def testGenerateXSDataIndexingResult(self):
strFilename = "XSDataMOSFLMOutputIndexing_reference.xml"
strPath = os.path.join(self.m_strDataPath, strFilename)
strXMLMOSFLMOutputIndexing = EDUtilsTest.readAndParseFile(strPath)
from XSDataMOSFLMv10 import XSDataMOSFLMOutputIndexing
xsDataMOSFLMOutputIndexing = XSDataMOSFLMOutputIndexing.parseString(
strXMLMOSFLMOutputIndexing)
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataIndexingResult = EDHandlerXSDataMOSFLMv10.generateXSDataIndexingResult(
xsDataMOSFLMOutputIndexing)
strReferenceFilename = "XSDataIndexingResult_reference.xml"
strReferencePath = os.path.join(self.m_strDataPath,
strReferenceFilename)
strXMLIndexingOutputReference = EDUtilsTest.readAndParseFile(
strReferencePath)
from XSDataMXv1 import XSDataIndexingResult
xsdataIndexingResultReference = XSDataIndexingResult.parseString(
strXMLIndexingOutputReference)
EDAssert.equal(xsdataIndexingResultReference.marshal(),
xsDataIndexingResult.marshal())
