def preProcess(self, _edObject=None):
EDPluginControl.preProcess(self)
self.DEBUG("EDPluginControlIndexingIndicatorsv10.preProcess")
# Load and prepare the execution plugin
self.__edPluginMOSFLMIndexing = self.loadPlugin(
self.__strMOSFLMIndexingPluginName)
self.__edPluginMOSFLMIndexing.setUseWarningInsteadOfError(True)
xsDataIndexingInput = XSDataIndexingInput()
xsDataIndexingInput.setDataCollection(
self.getDataInput("dataCollection")[0])
if self.hasDataInput("crystal"):
xsDataIndexingInput.setCrystal(self.getDataInput("crystal")[0])
if self.hasDataInput("refinedExperimentalCondition"):
xsDataIndexingInput.setExperimentalCondition(
self.getDataInput("refinedExperimentalCondition")[0])
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataMOSFLMIndexingInput = EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputIndexing(
xsDataIndexingInput)
self.__edPluginMOSFLMIndexing.setDataInput(xsDataMOSFLMIndexingInput)
self.__edPluginControlIndicators = self.loadPlugin(
self.__strControlledIndicatorsPluginName)
# Extract the images from the data collections
xsDataSubWedgeList = self.getDataInput(
"dataCollection")[0].getSubWedge()
xsDataInputControlImageQualityIndicators = XSDataInputControlImageQualityIndicators(
)
for xsDataSubWedge in xsDataSubWedgeList:
xsDataImageList = xsDataSubWedge.getImage()
for xsDataImage in xsDataImageList:
xsDataInputControlImageQualityIndicators.addImage(xsDataImage)
self.__edPluginControlIndicators.setDataInput(
xsDataInputControlImageQualityIndicators)
def preProcess(self, _edObject=None):
EDPluginControl.preProcess(self)
self.DEBUG("EDPluginControlIndexingIndicatorsv1_1.preProcess")
# Load and prepare the execution plugin
self.edPluginIndexingLabelit = self.loadPlugin(self.strPluginIndexingLabelit)
self.edPluginIndexingLabelit.setUseWarningInsteadOfError(True)
xsDataIndexingInput = XSDataIndexingInput()
xsDataIndexingInput.setDataCollection(self.getDataInput("dataCollection")[0])
if self.hasDataInput("crystal"):
xsDataIndexingInput.setCrystal(self.getDataInput("crystal")[0])
if self.hasDataInput("refinedExperimentalCondition"):
self.xsDataExperimentalCondition = self.getDataInput("refinedExperimentalCondition")[0]
else:
self.xsDataExperimentalCondition = self.getDataInput("dataCollection")[0].getSubWedge()[0].getExperimentalCondition()
xsDataIndexingInput.setExperimentalCondition(self.xsDataExperimentalCondition)
from EDHandlerXSDataPhenixv1_1 import EDHandlerXSDataPhenixv1_1
xsDataInputLabelitIndexing = EDHandlerXSDataPhenixv1_1.generateXSDataInputLabelitIndexing(xsDataIndexingInput)
self.edPluginIndexingLabelit.setDataInput(xsDataInputLabelitIndexing)
#
if self.bDoLabelitIndexing:
if (self.getControlledPluginName("indicatorsPlugin") is not None):
self.strControlledIndicatorsPluginName = self.getControlledPluginName("indicatorsPlugin")
self.edPluginControlIndicators = self.loadPlugin(self.strControlledIndicatorsPluginName)
# Extract the images from the data collections
xsDataSubWedgeList = self.getDataInput("dataCollection")[0].getSubWedge()
xsDataInputControlImageQualityIndicators = XSDataInputControlImageQualityIndicators()
for xsDataSubWedge in xsDataSubWedgeList:
xsDataImageList = xsDataSubWedge.getImage()
for xsDataImage in xsDataImageList:
xsDataInputControlImageQualityIndicators.addImage(xsDataImage)
self.edPluginControlIndicators.setDataInput(xsDataInputControlImageQualityIndicators)
def doSuccessReadImageHeader(self, _edPlugin=None):
self.DEBUG("EDPluginControlGridScreeningv1_0.doSuccessReadImageHeader")
self.retrieveSuccessMessages(_edPlugin, "EDPluginControlGridScreeningv1_0.doSuccessReadImageHeader")
xsDataResultReadImageHeader = self.edPluginControlReadImageHeader.getDataOutput()
if xsDataResultReadImageHeader is not None:
xsDataSubWedge = xsDataResultReadImageHeader.getSubWedge()
self.xsDataCollection = XSDataCollection()
self.xsDataCollection.addSubWedge(xsDataSubWedge)
self.xsDataCollection.setDiffractionPlan(self.xsDataDiffractionPlan)
if not self.bDoOnlyIntegrationWithXMLOutput:
xsDataInputControlImageQualityIndicators = XSDataInputControlImageQualityIndicators()
if self.bStoreImageQualityIndicatorsInISPyB:
xsDataInputControlImageQualityIndicators.doUploadToIspyb = XSDataBoolean(True)
else:
xsDataInputControlImageQualityIndicators.doUploadToIspyb = XSDataBoolean(False)
xsDataInputControlImageQualityIndicators.addImage(XSDataImage(path=XSDataString(self.strImageFile)))
self.edPluginControlIndicators.setDataInput(xsDataInputControlImageQualityIndicators)
self.edPluginControlIndicators.connectSUCCESS(self.doSuccessIndicators)
self.edPluginControlIndicators.connectFAILURE(self.doFailureIndicators)
self.executePluginSynchronous(self.edPluginControlIndicators)
else:
xsDataIndexingInput = XSDataIndexingInput()
xsDataIndexingInput.setDataCollection(self.xsDataCollection)
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataMOSFLMIndexingInput = EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputIndexing(xsDataIndexingInput)
self.edPluginMOSFLMIndexing.connectSUCCESS(self.doSuccessIndexingMOSFLM)
self.edPluginMOSFLMIndexing.connectFAILURE(self.doFailureIndexingMOSFLM)
self.edPluginMOSFLMIndexing.setDataInput(xsDataMOSFLMIndexingInput)
self.edPluginMOSFLMIndexing.executeSynchronous()
def doSuccessReadImageHeader(self, _edPlugin=None):
self.DEBUG("EDPluginControlGridScreeningv1_0.doSuccessReadImageHeader")
self.retrieveSuccessMessages(_edPlugin, "EDPluginControlGridScreeningv1_0.doSuccessReadImageHeader")
xsDataResultReadImageHeader = self.edPluginControlReadImageHeader.getDataOutput()
if xsDataResultReadImageHeader is not None:
xsDataSubWedge = xsDataResultReadImageHeader.getSubWedge()
self.xsDataCollection = XSDataCollection()
self.xsDataCollection.addSubWedge(xsDataSubWedge)
self.xsDataCollection.setDiffractionPlan(self.xsDataDiffractionPlan)
xsDataInputControlImageQualityIndicators = XSDataInputControlImageQualityIndicators()
xsDataInputControlImageQualityIndicators.addImage(XSDataImage(path=XSDataString(self.strImageFile)))
self.edPluginControlIndicators.setDataInput(xsDataInputControlImageQualityIndicators)
self.edPluginControlIndicators.connectSUCCESS(self.doSuccessIndicators)
self.edPluginControlIndicators.connectFAILURE(self.doFailureIndicators)
self.executePluginSynchronous(self.edPluginControlIndicators)
def preProcess(self, _edObject=None):
EDPluginControl.preProcess(self)
self.DEBUG("EDPluginControlIndexingIndicatorsv1_1.preProcess")
# Load and prepare the execution plugin
self.edPluginIndexingLabelit = self.loadPlugin(
self.strPluginIndexingLabelit)
self.edPluginIndexingLabelit.setUseWarningInsteadOfError(True)
xsDataIndexingInput = XSDataIndexingInput()
xsDataIndexingInput.setDataCollection(
self.getDataInput("dataCollection")[0])
if self.hasDataInput("crystal"):
xsDataIndexingInput.setCrystal(self.getDataInput("crystal")[0])
if self.hasDataInput("refinedExperimentalCondition"):
self.xsDataExperimentalCondition = self.getDataInput(
"refinedExperimentalCondition")[0]
else:
self.xsDataExperimentalCondition = self.getDataInput(
"dataCollection")[0].getSubWedge()[0].getExperimentalCondition(
)
xsDataIndexingInput.setExperimentalCondition(
self.xsDataExperimentalCondition)
from EDHandlerXSDataPhenixv1_1 import EDHandlerXSDataPhenixv1_1
xsDataInputLabelitIndexing = EDHandlerXSDataPhenixv1_1.generateXSDataInputLabelitIndexing(
xsDataIndexingInput)
self.edPluginIndexingLabelit.setDataInput(xsDataInputLabelitIndexing)
#
if self.bDoLabelitIndexing:
if (self.getControlledPluginName("indicatorsPlugin") is not None):
self.strControlledIndicatorsPluginName = self.getControlledPluginName(
"indicatorsPlugin")
self.edPluginControlIndicators = self.loadPlugin(
self.strControlledIndicatorsPluginName)
# Extract the images from the data collections
xsDataSubWedgeList = self.getDataInput(
"dataCollection")[0].getSubWedge()
xsDataInputControlImageQualityIndicators = XSDataInputControlImageQualityIndicators(
)
for xsDataSubWedge in xsDataSubWedgeList:
xsDataImageList = xsDataSubWedge.getImage()
for xsDataImage in xsDataImageList:
xsDataInputControlImageQualityIndicators.addImage(xsDataImage)
self.edPluginControlIndicators.setDataInput(
xsDataInputControlImageQualityIndicators)
def doSuccessReadImageHeader(self, _edPlugin=None):
self.DEBUG("EDPluginControlGridScreeningv1_0.doSuccessReadImageHeader")
self.retrieveSuccessMessages(_edPlugin, "EDPluginControlGridScreeningv1_0.doSuccessReadImageHeader")
xsDataResultReadImageHeader = self.edPluginControlReadImageHeader.getDataOutput()
if xsDataResultReadImageHeader is not None:
xsDataSubWedge = xsDataResultReadImageHeader.getSubWedge()
self.xsDataCollection = XSDataCollection()
self.xsDataCollection.addSubWedge(xsDataSubWedge)
self.xsDataCollection.setDiffractionPlan(self.xsDataDiffractionPlan)
if not self.bDoOnlyIntegrationWithXMLOutput:
xsDataInputControlImageQualityIndicators = XSDataInputControlImageQualityIndicators()
if self.bStoreImageQualityIndicatorsInISPyB:
xsDataInputControlImageQualityIndicators.doUploadToIspyb = XSDataBoolean(True)
else:
xsDataInputControlImageQualityIndicators.doUploadToIspyb = XSDataBoolean(False)
xsDataInputControlImageQualityIndicators.addImage(XSDataImage(path=XSDataString(self.strImageFile)))
self.edPluginControlIndicators.setDataInput(xsDataInputControlImageQualityIndicators)
self.edPluginControlIndicators.connectSUCCESS(self.doSuccessIndicators)
self.edPluginControlIndicators.connectFAILURE(self.doFailureIndicators)
self.executePluginSynchronous(self.edPluginControlIndicators)
else:
xsDataIndexingInput = XSDataIndexingInput()
xsDataIndexingInput.setDataCollection(self.xsDataCollection)
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataMOSFLMIndexingInput = EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputIndexing(xsDataIndexingInput)
self.edPluginMOSFLMIndexing.connectSUCCESS(self.doSuccessIndexingMOSFLM)
self.edPluginMOSFLMIndexing.connectFAILURE(self.doFailureIndexingMOSFLM)
self.edPluginMOSFLMIndexing.setDataInput(xsDataMOSFLMIndexingInput)
self.edPluginMOSFLMIndexing.executeSynchronous()
def preProcess(self, _edObject=None):
EDPluginControl.preProcess(self)
EDVerbose.DEBUG("EDPluginControlIndexingIndicatorsv10.preProcess")
# Load and prepare the execution plugin
self.__edPluginMOSFLMIndexing = self.loadPlugin(self.__strMOSFLMIndexingPluginName)
xsDataIndexingInput = XSDataIndexingInput()
xsDataIndexingInput.setDataCollection(self.getDataInput("dataCollection")[0])
if self.hasDataInput("crystal"):
xsDataIndexingInput.setCrystal(self.getDataInput("crystal")[0])
if self.hasDataInput("refinedExperimentalCondition"):
xsDataIndexingInput.setExperimentalCondition(self.getDataInput("refinedExperimentalCondition")[0])
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataMOSFLMIndexingInput = EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputIndexing(xsDataIndexingInput)
self.__edPluginMOSFLMIndexing.setDataInput(xsDataMOSFLMIndexingInput)
self.__edPluginControlIndicators = self.loadPlugin(self.__strControlledIndicatorsPluginName)
# Extract the images from the data collections
xsDataSubWedgeList = self.getDataInput("dataCollection")[0].getSubWedge()
xsDataInputControlImageQualityIndicators = XSDataInputControlImageQualityIndicators()
for xsDataSubWedge in xsDataSubWedgeList:
xsDataImageList = xsDataSubWedge.getImage()
for xsDataImage in xsDataImageList:
xsDataInputControlImageQualityIndicators.addImage(xsDataImage)
self.__edPluginControlIndicators.setDataInput(xsDataInputControlImageQualityIndicators)
