def postProcess(self, _edObject=None):
EDPluginExec.postProcess(self)
self.DEBUG("EDPluginExecSaxsCurvesv1_1.postProcess")
# Create some output data
xsDataResult = XSDataResultSaxsCurvesv1_0()
if self.outputDataFile is None:
self.outputDataFile = "output.edf"
if os.path.isfile(self.outputDataFile):
xsdFile = XSDataFile()
xsdFile.setPath(XSDataString(os.path.abspath(self.outputDataFile)))
xsDataResult.setOutputDataFile(xsdFile)
self.setDataOutput(xsDataResult)
def preProcess(self):
"""
PreProcess of the execution test: download a set of images from http://www.edna-site.org
and remove any existing output file
"""
EDTestCasePluginExecute.preProcess(self)
self.loadTestImage([ "bsa_013_08.ang", "bsa_013_08.dat" ])
strExpectedOutput = self.readAndParseFile (self.getReferenceDataOutputFile())
EDVerbose.DEBUG("strExpectedOutput:" + strExpectedOutput)
xsDataResultReference = XSDataResultSaxsCurvesv1_0.parseString(strExpectedOutput)
self.refOutput = xsDataResultReference.getOutputDataFile().getPath().getValue()
EDVerbose.DEBUG(" Output file is %s" % self.refOutput)
if not os.path.isdir(os.path.dirname(self.refOutput)):
os.makedirs(os.path.dirname(self.refOutput))
if os.path.isfile(self.refOutput):
EDVerbose.DEBUG(" Output file exists %s, I will remove it" % self.refOutput)
os.remove(self.refOutput)
def preProcess(self):
"""
PreProcess of the execution test: download a set of images from http://www.edna-site.org
and remove any existing output file
"""
EDTestCasePluginExecute.preProcess(self)
self.loadTestImage(["bsa_013_08.ang", "bsa_013_08.dat"])
strExpectedOutput = self.readAndParseFile(
self.getReferenceDataOutputFile())
EDVerbose.DEBUG("strExpectedOutput:" + strExpectedOutput)
xsDataResultReference = XSDataResultSaxsCurvesv1_0.parseString(
strExpectedOutput)
self.refOutput = xsDataResultReference.getOutputDataFile().getPath(
).getValue()
EDVerbose.DEBUG(" Output file is %s" % self.refOutput)
if not os.path.isdir(os.path.dirname(self.refOutput)):
os.makedirs(os.path.dirname(self.refOutput))
if os.path.isfile(self.refOutput):
EDVerbose.DEBUG(" Output file exists %s, I will remove it" %
self.refOutput)
os.remove(self.refOutput)
def testExecute(self):
"""
"""
self.run()
plugin = self.getPlugin()
strExpectedOutput = self.readAndParseFile (self.getReferenceDataOutputFile())
# strObtainedOutput = self.readAndParseFile (self.m_edObtainedOutputDataFile)
EDVerbose.DEBUG("Checking obtained result...")
xsDataResultReference = XSDataResultSaxsCurvesv1_0.parseString(strExpectedOutput)
xsDataResultObtained = plugin.getDataOutput()
EDAssert.strAlmostEqual(xsDataResultReference.marshal(), xsDataResultObtained.marshal(), "XSDataResult output are the same")
outputData = open(xsDataResultObtained.getOutputDataFile().getPath().getValue(), "rb").read()
referenceData = open(os.path.join(self.getTestsDataImagesHome(), "bsa_013_08.dat"), "rb").read()
EDVerbose.DEBUG("Expected= %s" % os.path.join(self.getTestsDataImagesHome(), "bsa_013_08.dat"))
EDVerbose.DEBUG("Obtained= %s" % xsDataResultObtained.getOutputDataFile().getPath().getValue())
EDAssert.strAlmostEqual(outputData, referenceData, _strComment="Curves are the same", _strExcluded="bsa_013_08")
def testExecute(self):
"""
"""
self.run()
plugin = self.getPlugin()
strExpectedOutput = self.readAndParseFile(
self.getReferenceDataOutputFile())
# strObtainedOutput = self.readAndParseFile (self.m_edObtainedOutputDataFile)
EDVerbose.DEBUG("Checking obtained result...")
xsDataResultReference = XSDataResultSaxsCurvesv1_0.parseString(
strExpectedOutput)
xsDataResultObtained = plugin.getDataOutput()
EDAssert.strAlmostEqual(xsDataResultReference.marshal(),
xsDataResultObtained.marshal(),
"XSDataResult output are the same")
outputData = os.linesep.join([
i.strip() for i in open(
xsDataResultObtained.getOutputDataFile().getPath().getValue(),
"rb") if not i.startswith("#")
])
referenceData = os.linesep.join([
i.strip() for i in open(
os.path.join(self.getTestsDataImagesHome(), "bsa_013_08.dat"),
"rb") if not i.startswith("#")
])
# EDVerbose.DEBUG("Expected= %s" % os.path.join(self.getTestsDataImagesHome(), "bsa_013_08.dat"))
# EDVerbose.DEBUG("Obtained= %s" % xsDataResultObtained.getOutputDataFile().getPath().getValue())
EDAssert.strAlmostEqual(
outputData,
referenceData,
_strComment="Curves are the same",
)
def postProcess(self, _edObject=None):
EDPluginExecProcessScript.postProcess(self)
EDVerbose.DEBUG("EDPluginExecSaxsCurvesv1_0.postProcess")
#Append the headers is needed
if self.extraHeader != []:
datalines = open(self.outputDataFile, "rb").readlines()
datafile = open(self.outputDataFile, "w")
for oneLine in self.extraHeader:
datafile.write(self.headerMarker + oneLine.strip() +
os.linesep)
for oneLine in datalines:
datafile.write(oneLine.strip() + os.linesep)
datafile.close()
# Create some output data
xsDataResult = XSDataResultSaxsCurvesv1_0()
if self.outputDataFile is None:
self.outputDataFile = "output.edf"
if os.path.isfile(self.outputDataFile):
xsdFile = XSDataFile()
xsdFile.setPath(XSDataString(os.path.abspath(self.outputDataFile)))
xsDataResult.setOutputDataFile(xsdFile)
self.setDataOutput(xsDataResult)
