help='reshape images to certain dimensions, f.e. -r 512,512,512')
parser.add_argument(
'-lf',
'--likefreesurfer',
action='store_true',
dest='likefreesurfer',
required=False,
default=False,
help=
'normalizes and reshapes images to match the freesurfer default: spacing 1,1,1 and dimensions 256,256,256'
)
parser.add_argument('-n',
'--nii',
action='store_true',
dest='nii',
required=False,
default=False,
help='output in .nii format')
# always show the help if no arguments were specified
if len(sys.argv) == 1:
parser.print_help()
sys.exit(1)
options = parser.parse_args()
logic = EqualizerLogic()
logic.run(options.master, options.input, options.outputdirectory,
options.spacing, options.dimensions, options.likefreesurfer,
options.nii)
"--output",
action="store",
dest="output",
required=True,
help="output trackvis file, f.e. -o /tmp/f_out.trk",
)
parser.add_argument(
"-j",
"--jobs",
action="store",
dest="jobs",
default=multiprocessing.cpu_count(),
help="number of parallel computations, f.e. -j 10",
)
parser.add_argument("-v", "--verbose", action="store_true", dest="verbose", help="show verbose output")
parser.add_argument(
"mode",
choices=["add", "sub"],
help="ADD all input tracks to one file or SUBTRACT all other input tracks from the first specified input",
)
# always show the help if no arguments were specified
if len(sys.argv) == 1:
parser.print_help()
sys.exit(1)
options = parser.parse_args()
logic = TrackvisCalcLogic()
logic.run(options.input, options.output, options.mode, options.verbose, options.jobs)
