Esempio n. 1
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 def find(self, seq, threshold=None, offset=0):
     """
     Search the given sequence for matches with scores less than or
     equal to the given threshold.  If no threshold given, assume
     exact match to IUPAC motif.
     """
     if threshold is None:
         threshold = len(self)
     return _motility.find_pwm(seq, self._m, threshold, offset=offset)
Esempio n. 2
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 def find(self, seq, threshold=None, offset=0):
     """
     Search the given sequence for matches with scores less than or
     equal to the given threshold.  If no threshold given, assume
     exact match to IUPAC motif.
     """
     if threshold is None:
         threshold = len(self)
     return _motility.find_pwm(seq, self._m, threshold, offset=offset)
Esempio n. 3
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 def find(self, seq, threshold, offset=0):
     """
     Search the given sequence for matches with scores less than or
     equal to the given threshold.
     """
     return _motility.find_pwm(seq, self._m, threshold, offset=offset)
Esempio n. 4
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 def find(self, seq, threshold, offset=0):
     """
     Search the given sequence for matches with scores less than or
     equal to the given threshold.
     """
     return _motility.find_pwm(seq, self._m, threshold, offset=offset)