Esempi in Python per run_with_seqs

Esempio n. 1

def ali_stringarray(ls):
    return      [ali.run_with_seqs(\
            ls[0].replace('N',''),\
                ls[i].replace('N',''))[1] 
                 for i in range(len(ls))]

Esempio n. 2

File: sequencing.py Progetto: bh0085/zhang

def align_seqs(ref,seqs):
    seqs = dict([(k,seqs[k]) for k in seqs.keys()[0:1]])
    return dict([(k, ali.run_with_seqs(\
            ref.seq.tostring().upper().replace('N',''),\
                seqs[k].replace('N',''))[1]) 
            for k,v in seqs.iteritems()])

Esempio n. 3

def align_seqs():
    ls = load_seqs()
    return [ali.run_with_seqs(\
            ls.values()[0].replace('N',''),\
                ls.values()[i].replace('N',''))[1] 
            for i in range(5)]