def build_form(self):
kit_id = self.current_user
ag_login_id = ag_data.get_user_for_kit(kit_id)
kit_barcodes = ag_data.getAvailableBarcodes(ag_login_id)
form = LogSample()
form.barcode.choices = [(v, v) for v in kit_barcodes]
form.sample_site.choices = self._get_sample_sites()
return form
def build_form(self):
kit_id = self.current_user
ag_login_id = ag_data.get_user_for_kit(kit_id)
kit_barcodes = ag_data.getAvailableBarcodes(ag_login_id)
form = LogSample()
form.barcode.choices = [(v, v) for v in kit_barcodes]
form.sample_site.choices = self._get_sample_sites()
return form
def get(self):
kit_id = self.current_user
ag_login_id = ag_data.get_user_for_kit(kit_id)
kit_barcodes = ag_data.getAvailableBarcodes(ag_login_id)
participant_name = self.get_argument('participant_name',
'environmental')
form = LogSample()
form.barcode.choices = [(v, v) for v in kit_barcodes]
form.sample_site.choices = self._get_sample_sites()
self.render('add_sample.html', skid=kit_id,
kit_barcodes=kit_barcodes,
participant_name=participant_name,
form=form)
def test_post_general(self):
self.mock_login(
ag_data.ut_get_supplied_kit_id(
'd8592c74-9694-2135-e040-8a80115d6401'))
# make sure barcode properly removed
self.assertIn(
'000005628',
ag_data.getAvailableBarcodes(
'd8592c74-9694-2135-e040-8a80115d6401'))
# Run test
response = self.post(
'/authed/add_sample_general/', {
'participant_name': 'environmental',
'barcode': '000005628',
'sample_site': 'Biofilm',
'sample_date': '12/11/2014',
'sample_time': '10:12 PM',
'notes': 'TESTING TORNADO LOGGING GENERAL'
})
self.assertEqual(response.code, 200)
self.assertTrue(response.effective_url.endswith('/authed/portal/'))
obs = ag_data.getAGBarcodeDetails('000005628')
exp = {
'status': '',
'ag_kit_barcode_id': 'db447092-620e-54d8-e040-8a80115d3637',
'ag_kit_id': 'db447092-6209-54d8-e040-8a80115d3637',
'barcode': '000005628',
'site_sampled': None,
'environment_sampled': 'Biofilm',
'sample_date': datetime.date(2014, 12, 11),
'sample_time': datetime.time(22, 12),
'notes': 'TESTING TORNADO LOGGING GENERAL',
'overloaded': None,
'withdrawn': None,
'other': None,
'moldy': None,
'refunded': None,
'date_of_last_email': None
}
# only look at those fields, that are not subject to scrubbing
self.assertEqual({k: obs[k] for k in exp}, exp)
def test_post_general(self):
self.mock_login('tst_LbxUH')
# make sure barcode properly removed
self.assertIn('000005628', ag_data.getAvailableBarcodes(
'd8592c74-9694-2135-e040-8a80115d6401'))
# Run test
response = self.post('/authed/add_sample_general/',
{'participant_name': 'environmental',
'barcode': '000005628',
'sample_site': 'Biofilm',
'sample_date': '12/11/2014',
'sample_time': '10:12 PM',
'notes': 'TESTING TORNADO LOGGING GENERAL'})
self.assertEqual(response.code, 200)
self.assertTrue(
response.effective_url.endswith('/authed/portal/'))
obs = ag_data.getAGBarcodeDetails('000005628')
exp = {
'status': None,
'ag_kit_barcode_id': 'db447092-620e-54d8-e040-8a80115d3637',
'ag_kit_id': 'db447092-6209-54d8-e040-8a80115d3637',
'barcode': '000005628',
'site_sampled': None,
'environment_sampled': 'Biofilm',
'name': 'REMOVED',
'sample_date': datetime.date(2014, 12, 11),
'sample_time': datetime.time(22, 12),
'notes': 'TESTING TORNADO LOGGING GENERAL',
'overloaded': None,
'withdrawn': None,
'email': 'REMOVED',
'other': None,
'moldy': None,
'participant_name': None,
'refunded': None,
'date_of_last_email': None,
'other_text': 'REMOVED'
}
self.assertDictEqual(obs, exp)
def test_post_human(self):
ag_login_id = 'd8592c74-9694-2135-e040-8a80115d6401'
self.mock_login(ag_data.ut_get_supplied_kit_id(ag_login_id))
# make sure barcode properly removed
self.assertIn('000005628', ag_data.getAvailableBarcodes(ag_login_id))
# Run test
names = ag_data.ut_get_participant_names_from_ag_login_id(ag_login_id)
response = self.post('/authed/add_sample_human/',
{'participant_name': names[0],
'barcode': '000005628',
'sample_site': 'Stool',
'sample_date': '12/13/2014',
'sample_time': '11:12 PM',
'notes': 'TESTING TORNADO LOGGING HUMAN'})
self.assertEqual(response.code, 200)
self.assertTrue(
response.effective_url.endswith('/authed/portal/'))
obs = ag_data.getAGBarcodeDetails('000005628')
exp = {
'status': '',
'ag_kit_barcode_id': 'db447092-620e-54d8-e040-8a80115d3637',
'ag_kit_id': 'db447092-6209-54d8-e040-8a80115d3637',
'barcode': '000005628',
'site_sampled': 'Stool',
'environment_sampled': None,
'sample_date': datetime.date(2014, 12, 13),
'sample_time': datetime.time(23, 12),
'notes': 'TESTING TORNADO LOGGING HUMAN',
'overloaded': None,
'withdrawn': None,
'other': None,
'moldy': None,
'refunded': None,
'date_of_last_email': None,
}
# only look at those fields, that are not subject to scrubbing
self.assertEqual({k: obs[k] for k in exp}, exp)
def test_post_bad_data(self):
self.mock_login('tst_LbxUH')
# Malformed date
# make sure barcode properly removed
self.assertIn('000005628', ag_data.getAvailableBarcodes(
'd8592c74-9694-2135-e040-8a80115d6401'))
# Run test
response = self.post('/authed/add_sample_general/',
{'participant_name': 'environmental',
'barcode': '000005628',
'sample_site': 'Biofilm',
'sample_date': '98/98/1998',
'sample_time': '10:12 PM',
'notes': 'TESTING TORNADO LOGGING GENERAL'})
self.assertEqual(response.code, 200)
self.assertTrue(
response.effective_url.endswith('/authed/add_sample_general/'))
# Malformed Time
# make sure barcode properly removed
self.assertIn('000005628', ag_data.getAvailableBarcodes(
'd8592c74-9694-2135-e040-8a80115d6401'))
# Run test
response = self.post('/authed/add_sample_general/',
{'participant_name': 'environmental',
'barcode': '000005628',
'sample_site': 'Biofilm',
'sample_date': '12/12/2014',
'sample_time': '10:98 PM',
'notes': 'TESTING TORNADO LOGGING GENERAL'})
self.assertEqual(response.code, 200)
self.assertTrue(
response.effective_url.endswith('/authed/add_sample_general/'))
# Missing data
# make sure barcode properly removed
self.assertIn('000005628', ag_data.getAvailableBarcodes(
'd8592c74-9694-2135-e040-8a80115d6401'))
# Run test
response = self.post('/authed/add_sample_general/',
{'participant_name': 'environmental',
'barcode': '000005628',
'sample_site': 'Biofilm',
'sample_date': '12/12/2014',
'sample_time': '',
'notes': 'TESTING TORNADO LOGGING GENERAL'})
self.assertEqual(response.code, 200)
self.assertTrue(
response.effective_url.endswith('/authed/add_sample_general/'))
# Non-owned barcode
response = self.post('/authed/add_sample_general/',
{'participant_name': 'environmental',
'barcode': '000002122',
'sample_site': 'Biofilm',
'sample_date': '12/12/2014',
'sample_time': '10:12 PM',
'notes': 'TESTING TORNADO LOGGING GENERAL'})
self.assertEqual(response.code, 200)
self.assertTrue(
response.effective_url.endswith('/authed/add_sample_general/'))
self.assertIn('000002011', ag_data.getAvailableBarcodes(
'd8592c74-8710-2135-e040-8a80115d6401'))
def test_post_animal(self):
self.mock_login('tst_DbGvP')
# make sure barcode properly removed
self.assertIn('000002011', ag_data.getAvailableBarcodes(
'd8592c74-8710-2135-e040-8a80115d6401'))
def test_post_bad_data(self):
ag_login_id = 'd8592c74-9694-2135-e040-8a80115d6401'
self.mock_login(ag_data.ut_get_supplied_kit_id(ag_login_id))
# Malformed date
# make sure barcode properly removed
self.assertIn('000005628', ag_data.getAvailableBarcodes(ag_login_id))
# Run test
names = ag_data.ut_get_participant_names_from_ag_login_id(ag_login_id)
response = self.post('/authed/add_sample_general/',
{'participant_name': names[0],
'barcode': '000005628',
'sample_site': 'Biofilm',
'sample_date': '98/98/1998',
'sample_time': '10:12 PM',
'notes': 'TESTING TORNADO LOGGING GENERAL'})
self.assertEqual(response.code, 200)
self.assertTrue(
response.effective_url.endswith('/authed/add_sample_general/'))
# Malformed Time
# make sure barcode properly removed
self.assertIn('000005628', ag_data.getAvailableBarcodes(
ag_login_id))
# Run test
response = self.post('/authed/add_sample_general/',
{'participant_name': names[0][0],
'barcode': '000005628',
'sample_site': 'Biofilm',
'sample_date': '12/12/2014',
'sample_time': '10:98 PM',
'notes': 'TESTING TORNADO LOGGING GENERAL'})
self.assertEqual(response.code, 200)
self.assertTrue(
response.effective_url.endswith('/authed/add_sample_general/'))
# Missing data
# make sure barcode properly removed
self.assertIn('000005628', ag_data.getAvailableBarcodes(ag_login_id))
# Run test
response = self.post('/authed/add_sample_general/',
{'participant_name': names[0][0],
'barcode': '000005628',
'sample_site': 'Biofilm',
'sample_date': '12/12/2014',
'sample_time': '',
'notes': 'TESTING TORNADO LOGGING GENERAL'})
self.assertEqual(response.code, 200)
self.assertTrue(
response.effective_url.endswith('/authed/add_sample_general/'))
# Non-owned barcode
barcode = '000001015'
ag_login_id = ag_data.ut_get_ag_login_id_from_barcode(barcode)
name = \
ag_data.ut_get_participant_names_from_ag_login_id(ag_login_id)[0]
response = self.post('/authed/add_sample_general/',
{'participant_name': escape.url_escape(name),
'barcode': barcode,
'sample_site': 'Biofilm',
'sample_date': '12/12/2014',
'sample_time': '10:12 PM',
'notes': 'TESTING TORNADO LOGGING GENERAL'})
self.assertEqual(response.code, 200)
self.assertTrue(
response.effective_url.endswith('/authed/add_sample_general/'))
self.assertIn(barcode, ag_data.getAvailableBarcodes(ag_login_id))
def test_post_animal(self):
barcode = '000001015'
ag_login_id = ag_data.ut_get_ag_login_id_from_barcode(barcode)
self.mock_login(ag_data.ut_get_supplied_kit_id(ag_login_id))
# make sure barcode properly removed
self.assertIn('000001015', ag_data.getAvailableBarcodes(ag_login_id))
def test_post_animal(self):
barcode = '000001015'
ag_login_id = ag_data.ut_get_ag_login_id_from_barcode(barcode)
self.mock_login(ag_data.ut_get_supplied_kit_id(ag_login_id))
# make sure barcode properly removed
self.assertIn('000001015', ag_data.getAvailableBarcodes(ag_login_id))
