def strip_record(record: Record) -> None:
""" Discard antismash specific features and feature qualifiers """
logging.debug(
"Stripping antiSMASH features and annotations from record: %s",
record.id)
record.clear_clusters()
record.clear_cluster_borders()
record.clear_cds_motifs()
record.clear_antismash_domains()
record.clear_pfam_domains()
# clean up antiSMASH annotations in CDS features
for feature in record.get_cds_features():
feature.sec_met = None
feature.gene_functions.clear()
def strip_record(record: Record) -> None:
""" Discard antismash specific features and feature qualifiers """
logging.debug(
"Stripping antiSMASH features and annotations from record: %s",
record.id)
record.clear_clusters()
record.clear_superclusters()
record.clear_subregions()
record.clear_regions()
record.clear_antismash_domains()
record.clear_pfam_domains()
# clean up antiSMASH-created CDSMotifs, but leave the rest
motifs = list(record.get_cds_motifs())
record.clear_cds_motifs()
for motif in motifs:
if not motif.created_by_antismash:
record.add_cds_motif(motif)
# clean up antiSMASH annotations in CDS features
for feature in record.get_cds_features():
feature.sec_met = SecMetQualifier()
feature.gene_functions.clear()
