def parse_subject_wrapper(self, subject_line):
# used by core.parse_subject, but only if locus tag not in self.seqlengths
with patch.object(core, 'get_cds_lengths', returns=self.seqlengths):
with patch.object(Record,
'get_cds_by_name',
returns=DummyCDS(1, 301)):
return core.parse_subject(subject_line, self.seqlengths,
self.seq_record)
def parse_subject_wrapper(self, subject_line):
seq_record = Record("dummy")
seqlengths = {}
# used by core.parse_subject, but only if locus tag not in self.seqlengths
with patch.object(core, 'get_cds_lengths', return_value={}):
with patch.object(Record,
'get_cds_by_name',
return_value=DummyCDS(1, 101)):
return core.parse_subject(subject_line, seqlengths, seq_record)
def parse_subject_wrapper(self, subject_line):
return core.parse_subject(subject_line, self.seqlengths,
self.geneclustergenes, self.seq_record)
def parse_subject_wrapper(self, subject_line):
geneclustergenes = {}
seq_record = Record("dummy")
seqlengths = {}
return core.parse_subject(subject_line, seqlengths, geneclustergenes,
seq_record)
