def test_persist_result_helper(self):
"""Ensure persist_result_helper works as intended."""
wrapper = AnalysisResultWrapper().save()
analysis_result = AnalysisResultMeta(sample_similarity=wrapper).save()
sample_similarity = create_mvp_sample_similarity()
persist_result_helper(sample_similarity, analysis_result.uuid,
'sample_similarity')
analysis_result.reload()
self.assertIn('sample_similarity', analysis_result)
wrapper = getattr(analysis_result, 'sample_similarity').fetch()
self.assertIn('status', wrapper)
self.assertEqual('S', wrapper.status)
def persist_result(result_data, analysis_result_id, result_name):
"""Persist Microbe Directory results."""
result = MicrobeDirectoryResult(**result_data)
persist_result_helper(result, analysis_result_id, result_name)
def persist_result(result_data, analysis_result_id, result_name):
"""Persist Beta Diversity results."""
result = BetaDiversityResult(**result_data)
persist_result_helper(result, analysis_result_id, result_name)
def persist_result(result_data, analysis_result_id, result_name):
"""Persist Methyl results."""
result = MethylResult(**result_data)
persist_result_helper(result, analysis_result_id, result_name)
def persist_result(result_data, analysis_result_id, result_name):
"""Persist Macrone results."""
result = MacrobeResult(**result_data)
persist_result_helper(result, analysis_result_id, result_name)
def persist_result(result_data, analysis_result_id, result_name):
"""Persist Taxa Tree results."""
result = TaxaTreeResult(**result_data)
persist_result_helper(result, analysis_result_id, result_name)
def persist_result(result_data, analysis_result_id, result_name):
"""Persist Functional Genes results."""
result = FunctionalGenesResult(**result_data)
persist_result_helper(result, analysis_result_id, result_name)
def persist_result(result_data, analysis_result_id, result_name):
"""Persist Reads Classified result."""
result = ReadsClassifiedResult(samples=result_data)
persist_result_helper(result, analysis_result_id, result_name)
def persist_result(result_data, analysis_result_id, result_name):
"""Persist Pathways results."""
result = PathwayResult(**result_data)
persist_result_helper(result, analysis_result_id, result_name)
def persist_result(result_data, analysis_result_id, result_name):
"""Persist HMP results."""
result = HMPResult(**result_data)
persist_result_helper(result, analysis_result_id, result_name)
def persist_result(result_data, analysis_result_id):
"""Persist Sample Similarity results."""
result = SampleSimilarityResult(**result_data)
persist_result_helper(result, analysis_result_id, MODULE_NAME)
def persist_result(result_data, analysis_result_id, result_name):
"""Persist Read Stats results."""
result = ReadStatsResult(**result_data)
persist_result_helper(result, analysis_result_id, result_name)
def persist_result(result_data, analysis_result_id, result_name):
"""Persist Taxon results."""
result = TaxonAbundanceResult(**result_data)
persist_result_helper(result, analysis_result_id, result_name)
def persist_result(result_data, analysis_result_id, result_name):
"""Persist VFDB results."""
result = VFDBResult(**result_data)
persist_result_helper(result, analysis_result_id, result_name)
def persist_result(result_data, analysis_result_id, result_name):
"""Persist CARD AMRS results."""
result = CARDGenesResult(**result_data)
persist_result_helper(result, analysis_result_id, result_name)