def fitness(self, ind, user_feedback):
'''
Compute fitness.
user_feedback is a list of the user's input,
the list contents are ordered the same as the
feedback variable in the config yaml file.
[best]
'''
best = user_feedback[0]
ind.fitness = hamming(ind.genome, best.genome)
def fitness(self, ind, user_feedback):
'''
Compute fitness.
user_feedback is [best]
'''
best = user_feedback[0]
subj = 0
if ind.genome == best.genome:
subj = self.geneLen
else:
subj += hamming(ind, best)
ind.scalefit = ind.fitness = subj
def fitness(self, ind, user_feedback):
'''
Compute fitness.
user_feedback is a list of the user's input,
the list contents are ordered the same as the
feedback variable in the config yaml file.
[best]
'''
best = user_feedback[0]
subj = 0
if ind.genome == best.genome:
subj = self.geneLen
else:
subj += hamming(ind, best)
ind.scalefit = ind.fitness = subj
def fitness(self, ind, user_feedback):
'''
Compute fitness.
user_feedback is [best,worst]
'''
best, worst = user_feedback
sumValue = 0
if ind.genome == best.genome:
sumValue = 2 * len(ind.genome)
elif ind.genome == worst.genome:
sumValue = 0
else:
#sumValue += lcs(ind.genome, best.genome)
#sumValue += len(ind.genome)-lcs(ind.genome, worst.genome)
sumValue += hamming(ind, best, worst)
ind.scalefit = ind.fitness = sumValue
def fitness(self, ind, user_feedback):
'''
Compute fitness.
user_feedback is a list of the user's input,
the list contents are ordered the same as the
feedback variable in the config yaml file.
[best]
'''
best = user_feedback[0]
if self.clear:
self.decode(best)
self.clear = False
self.decode(ind)
f1 = hamming(ind.bit_chrome, best.bit_chrome)
f1 /= float(len(ind.bit_chrome))
ind_root = ind.decoded_data
ind_root.stats()
best_root = best.decoded_data
best_root.stats()
f3 = compareTrees(ind_root, best_root)
f3 /= float(max(ind_root.num_children, best_root.num_children)+1)
f2 = 0
#print 'comp: ', f3, f1
#d = 0
#printTree(d, ind_root)
#printTree(d, best_root)
ind.fitness = (f1*2 + f2 + f3) * 100
def fitness(self, ind, user_feedback):
'''
Compute fitness.
user_feedback is [best,worst]
'''
best,worst = user_feedback
subj = 0
widgetNum = self.widgetNum
if ind.genome == best.genome:
subj = 2 * len(ind.genome['grid'])+len(ind.genome['style'])
elif ind.genome == worst.genome:
subj = 0
else:
#sum += lcs(ind.genome, best.genome)
#sum += len(ind.genome)-lcs(ind.genome, worst.genome)
subj += hamming(ind, best, worst)
#-------------------------------------------------------------#
# BEGIN OBJECTIVE EVALUATION
#-------------------------------------------------------------#
red = green = blue = 0
colorFitness = 0
myValues = self.decode(ind.genome['style'])
# Compare widget colors, we want the colors to be similar, so a low value is good
# start from 1, since at pos 0 we store window color
for i in xrange(1, widgetNum - 1):
for j in xrange(i + 1, widgetNum):
red = abs(myValues[i][0] - myValues[j][0])
green = abs(myValues[i][1] - myValues[j][1])
blue = abs(myValues[i][2] - myValues[j][2])
distance = (red*red + green*green + blue*blue)**0.5
colorFitness += (self.maxDist-distance) / self.maxDist * 100.
windColor = 0
# compare all widgets to the window color, we want a high color diff between each widget
# and the background color
# A high value is good
for i in xrange(1, widgetNum):
# window color is stored at pos 0
red = abs(myValues[i][0] - myValues[0][0])
green = abs(myValues[i][1] - myValues[0][1])
blue = abs(myValues[i][2] - myValues[0][2])
distance = (red*red + green*green + blue*blue)**0.5
windColor += distance / self.maxDist * 100.
obj = colorFitness + windColor
#-------------------------------------------------------------#
# END OBJECTIVE EVALUATION
#-------------------------------------------------------------#
subj = float(subj)
# Scale objective and subjective fitness components
objFitness = (obj-self.objMin)/(self.objMax-self.objMin) * self.objScaleMax + self.objScaleMin
subjFitness = (subj-self.subjMin)/(self.subjMax-self.subjMin) * self.subjScaleMax + self.subjScaleMin
w1, w2 = self.params['weight1'], self.params['weight2']
#ind.scalefit = ind.fitness = objFitness * w1 + subjFitness * w2
ind.objFitness = objFitness
ind.subjFitness = subjFitness
ind.fitness = [objFitness, subjFitness]
def report(self, pop, subset, gen):
app.Application.report(self, pop, gen)
maxFit = 0.0
sumFit = 0.0
minFit = 100000.0
sumObjFit = 0.0
sumSubjFit = 0.0
best = None
worst = None
## this can be replaced with a max and min function
#for ind in pop:
# if ind.fitness > maxFit:
# maxFit = ind.fitness
# best = ind
# if ind.fitness < minFit:
# minFit = ind.fitness
# worst = ind
#
# sumFit += ind.fitness
# sumObjFit += ind.objFitness
# sumSubjFit += ind.subjFitness
#
#popLen = len(pop)
#print '%i) Best Fit: %.2f, Avg Fit: %.2f' % (gen, best.fitness, sumFit/popLen)
## Compute avg objective and subjective fitness
#objFit = sumObjFit / popLen
#subjFit = sumSubjFit / popLen
## gen max avg min opt
#self.fout.write("%5d %10.2f %10.2f %10.2f " % (gen,
# best.fitness, sumFit/len(pop), worst.fitness))
## obj_max obj_avg obj_min subj_max subj_avg subj_min
#self.fout.write("%10.2f %10.2f %10.2f %10.2f %10.2f %10.2f\n" % (best.objFitness, objFit,
# worst.objFitness, best.subjFitness, subjFit, worst.subjFitness))
# minus fitness bias dimension
#len_fit = len(pop[0].fitness) - 1
#fit = [0.] * len_fit
#for ind in pop:
# for i in xrange(len_fit):
# fit[i] += (ind.fitness[i] - self.limits['min'][i])/ self.limits['max'][i]
#pop_len = len(pop)
#self.fout.write('%d\t%.5f\t%.5f\n' % (gen, fit[0]/pop_len, fit[1]/pop_len))
avg_hd = 0.
pop_len = len(pop)
for i in xrange(pop_len-1):
for j in xrange(i+1, pop_len):
avg_hd += hamming(pop[i].genome['grid']+pop[i].genome['style'],
pop[j].genome['grid']+pop[j].genome['style'])
avg_hd /= float(pop_len)
self.fout.write('%d\t%.5f\n' % (gen, avg_hd))
f = open('data/xul_gen_%d' % gen, 'w')
i = 0
pop.sort(lambda a,b: cmp(a.rank, b.rank))
for i in xrange(10):
f.write('%.2f %.2f\n' % (pop[i].fitness[0], pop[i].fitness[1]))
f.close()