def filterStack(self, stackname, minx=600, maxx=1600, miny=82, maxy=150):
runnum = apStack.getNumStacksFromSession(self.sessionname)
filtstackname = "meanfilt%d-%s"%(runnum+1, self.timestamp)
stackid = apStack.getStackIdFromRunName(stackname, self.sessionname)
if not stackid:
apDisplay.printError("Failed to find stack %s for session %s"%(stackname, self.sessionname))
script = os.path.join(self.appiondir, "bin", "stackFilter.py ")
# params = ((" --runname=%s --projectid=%d --old-stack-id=%d --minx=%d --maxx=%d --miny=%d --maxy=%d --description='%s'")
# %(filtstackname, self.params['projectid'], stackid,
# 600, 1000, 82, 105,
# 'filtering junk with test suite application'))
params = ((" --runname=%s --projectid=%d --old-stack-id=%d --minx=%d --maxx=%d --miny=%d --maxy=%d --description='%s'")
%(filtstackname, self.params['projectid'], stackid,
minx, maxx, miny, maxy,
'filtering junk with test suite application'))
# Add appion flags
if self.params['commit'] is True:
params += " --commit "
else:
params += " --no-commit "
self.runCommand(script+" "+params)
stackid = apStack.getStackIdFromSubStackName(filtstackname, self.sessionname)
if not stackid:
apDisplay.printError("Failed to create stack %s for session %s during stackFilter test."%(filtstackname, self.sessionname))
return filtstackname
def maxLike(self, substackname, lowpass=10, highpass=2000, numref=3, bin=2, maxiter=12):
runnum = apAlignment.getNumAlignRunsFromSession(self.sessionname)
maxlikename = "maxlike%d-%s"%(runnum+1, self.timestamp)
stackid = apStack.getStackIdFromSubStackName(substackname, self.sessionname)
if not stackid:
apDisplay.printError("Failed to find stack %s for session %s during maxLikeAlignment test."%(substackname, self.sessionname))
print (self.params['projectid'], stackid, 10, 2000, 3, 1, 12, 'max like with test suite application')
script = os.path.join(self.appiondir, "bin", "maxlikeAlignment.py")
params = (" --runname=%s --projectid=%d --stack=%d --lowpass=%d --highpass=%d --num-ref=%d --bin=%d --savemem --converge=slow --mirror --fast --fast-mode=narrow --max-iter=%d --description='%s'"
%(maxlikename, self.params['projectid'], stackid, lowpass, highpass, numref, bin, maxiter,
'max like with test suite application'))
# Add appion flags
if self.params['commit'] is True:
params += " --commit "
else:
params += " --no-commit "
self.runCommand(script+" "+params)
return maxlikename
def maxLike(self, substackname):
runnum = apAlignment.getNumAlignRunsFromSession(self.sessionname)
maxlikename = "maxlike%d-%s" % (runnum + 1, self.timestamp)
stackid = apStack.getStackIdFromSubStackName(substackname, self.sessionname)
print (self.params["projectid"], stackid, 10, 2000, 3, 1, 12, "max like with test suite application")
script = os.path.join(self.appiondir, "bin", "maxlikeAlignment.py")
params = (
" --runname=%s --projectid=%d --stack=%d --lowpass=%d --highpass=%d --num-ref=%d --bin=%d --savemem --converge=slow --mirror --fast --fast-mode=narrow --max-iter=%d --description='%s'"
% (
maxlikename,
self.params["projectid"],
stackid,
10,
2000,
3,
2,
12,
"max like with test suite application",
)
)
if self.params["commit"] is True:
params += " --commit "
else:
params += " --no-commit "
self.runCommand(script + " " + params)
return maxlikename
def maxLike(self, substackname):
runnum = apAlignment.getNumAlignRunsFromSession(self.sessionname)
maxlikename = "maxlike%d-%s"%(runnum+1, self.timestamp)
stackid = apStack.getStackIdFromSubStackName(substackname, self.sessionname)
print (self.params['projectid'], stackid, 10, 2000, 3, 1, 12, 'max like with test suite application')
script = os.path.join(self.appiondir, "bin", "maxlikeAlignment.py")
params = (" --runname=%s --projectid=%d --stack=%d --lowpass=%d --highpass=%d --num-ref=%d --bin=%d --savemem --converge=slow --mirror --fast --fast-mode=narrow --max-iter=%d --description='%s'"
%(maxlikename, self.params['projectid'], stackid, 10, 2000, 3, 2, 12,
'max like with test suite application'))
if self.params['commit'] is True:
params += " --commit "
else:
params += " --no-commit "
self.runCommand(script+" "+params)
return maxlikename