def __init__(self, spec_name, primary, association, type=None, format=None, # @ReservedAssignment @IgnorePep8
**kwargs):
InputFilesets.__init__(self, spec_name, format,
frequency='per_session', **kwargs)
self._primary = primary
if association not in self.VALID_ASSOCIATIONS:
raise BananaUsageError(
"Invalid association '{}' passed to BidsAssocInput, "
"can be one of '{}'".format(
association, "', '".join(self.VALID_ASSOCIATIONS)))
self._association = association
self._type = type
def __init__(self,
spec_name,
type,
valid_formats=None,
task=None,
modality=None,
**kwargs):
InputFilesets.__init__(self,
spec_name,
pattern=None,
valid_formats=valid_formats,
frequency='per_session',
**kwargs)
BaseBidsFileset.__init__(self, type, modality, task)
def initkwargs(self):
dct = InputFilesets.initkwargs(self)
dct['primary'] = self.primary
dct['format'] = self.primary
dct['association'] = self.association
dct['type'] = self._type
return dct
logger = logging.getLogger('banana')
logger.setLevel(logging.DEBUG)
# Stream Handler
handler = logging.StreamHandler()
formatter = logging.Formatter("%(levelname)s - %(message)s")
handler.setFormatter(formatter)
logger.addHandler(handler)
# File Handler
handler = logging.FileHandler(os.path.join(WORK_PATH, 'out.log'))
formatter = logging.Formatter("%(levelname)s - %(message)s")
handler.setFormatter(formatter)
logger.addHandler(handler)
inputs = [
InputFilesets('series', dicom_format,
'R-L_MRtrix_60_directions_interleaved_B0_ep2d_diff_p2'),
InputFilesets('magnitude', dicom_format,
'L-R_MRtrix_60_directions_interleaved_B0_ep2d_diff_p2')
]
study = DwiStudy(
name=args.study_name,
repository=XnatRepo(project_id='MRH060',
server='https://mbi-xnat.erc.monash.edu.au',
cache_dir=os.path.join(scratch_dir,
'xnat_cache-mnd')),
processor=SingleProc(
work_dir=os.path.join(scratch_dir, 'xnat_working_dir-mnd')),
inputs=inputs,
subject_ids=args.subject,
visit_ids=args.session,
def __hash__(self):
return (InputFilesets.__hash__(self) ^
hash(self.primary) ^
hash(self.format) ^
hash(self.association) ^
hash(self._type))
def __eq__(self, other):
return (InputFilesets.__eq__(self, other) and
self.primary == other.primary and
self.format == other.format and
self.association == other.association and
self._type == other._type)
def initkwargs(self):
dct = InputFilesets.initkwargs(self)
dct.update(BaseBidsFileset.initkwargs(self))
return dct
def __hash__(self):
return (InputFilesets.__hash__(self) ^
BaseBidsFileset.__hash__(self))
def __eq__(self, other):
return (InputFilesets.__eq__(self, other) and
BaseBidsFileset.__eq__(self, other))
def __init__(self, spec_name, type, valid_formats=None, task=None,# @ReservedAssignment @IgnorePep8
modality=None, **kwargs):
InputFilesets.__init__(
self, spec_name, pattern=None, valid_formats=valid_formats,
frequency='per_session', **kwargs) # @ReservedAssignment @IgnorePep8
BaseBidsFileset.__init__(self, type, modality, task)