def _cache_path(self, fileset, name=None, dataset=None):
if dataset is None:
dataset = fileset.dataset
subj_dir, sess_dir = self._get_item_labels(fileset, dataset=dataset)
cache_dir = op.join(self._cache_dir, dataset.name, subj_dir, sess_dir)
makedirs(cache_dir, exist_ok=True)
if name is None:
name = '{}-{}'.format(fileset.id,
special_char_re.sub('_', fileset.name))
return op.join(cache_dir, name)
def test_data_dir(cls):
try:
return cls._test_data_dir
except AttributeError:
try:
cls._test_data_dir = os.environ['ARCANA_TEST_DATA']
makedirs(cls._test_data_dir, exist_ok=True)
except KeyError:
cls._test_data_dir = op.join(cls.BASE_TEST_DIR, 'data')
return cls._test_data_dir
def __init__(self, server, cache_dir, user=None,
password=None, check_md5=True, race_cond_delay=30,
session_filter=None):
super().__init__()
if not isinstance(server, basestring):
raise ArcanaUsageError(
"Invalid server url {}".format(server))
self._server = server
self._cache_dir = cache_dir
makedirs(self._cache_dir, exist_ok=True)
self._user = user
self._password = password
self._race_cond_delay = race_cond_delay
self._check_md5 = check_md5
self._session_filter = session_filter
self._login = None
def __init__(self,
server,
project_id,
cache_dir,
user=None,
password=None,
check_md5=True,
race_cond_delay=30):
super(XnatRepository, self).__init__()
self._project_id = project_id
self._server = server
self._cache_dir = cache_dir
makedirs(self._cache_dir, exist_ok=True)
self._user = user
self._password = password
self._race_cond_delay = race_cond_delay
self._check_md5 = check_md5
self._login = None
def _make_dir(self, path):
makedirs(path, exist_ok=True)
return path
def __init__(self, root_dir):
self._root_dir = root_dir
derivatives_path = op.join(root_dir, self.DERIVATIVES_SUB_PATH)
makedirs(derivatives_path, exist_ok=True)
DirectoryRepository.__init__(derivatives_path)
self._layout = gb.BIDSLayout(self.base_dir)
def _cache_path(self, fileset):
subj_dir, sess_dir = self._get_item_labels(fileset)
cache_dir = op.join(self._cache_dir, self.project_id, subj_dir,
sess_dir)
makedirs(cache_dir, exist_ok=True)
return op.join(cache_dir, fileset.fname)