def finalize_node(self, node:nn.ModuleList, node_index:int,
node_desc:NodeDesc, max_final_edges:int,
cov:np.array, cell: Cell, node_id: int,
*args, **kwargs)->NodeDesc:
# node is a list of edges
assert len(node) >= max_final_edges
# covariance matrix shape must be square 2-D
assert len(cov.shape) == 2
assert cov.shape[0] == cov.shape[1]
# the number of primitive operators has to be greater
# than equal to the maximum number of final edges
# allowed
assert cov.shape[0] >= max_final_edges
# get the order and alpha of all ops other than 'none'
in_ops = [(edge,op,alpha,i) for i, edge in enumerate(node) \
for op, alpha in edge._op.ops()
if not isinstance(op, Zero)]
assert len(in_ops) >= max_final_edges
# order all the ops by alpha
in_ops_sorted = sorted(in_ops, key=lambda in_op:in_op[2], reverse=True)
# keep under consideration top half of the ops
num_to_keep = max(max_final_edges, len(in_ops_sorted)//2)
top_ops = in_ops_sorted[:num_to_keep]
# get the covariance submatrix of the top ops only
cov_inds = []
for edge, op, alpha, edge_num in top_ops:
ind = self._divnas_cells[cell].node_num_to_node_op_to_cov_ind[node_id][op]
cov_inds.append(ind)
cov_top_ops = cov[np.ix_(cov_inds, cov_inds)]
assert len(cov_inds) == len(top_ops)
assert len(top_ops) >= max_final_edges
assert cov_top_ops.shape[0] == cov_top_ops.shape[1]
assert len(cov_top_ops.shape) == 2
# run brute force set selection algorithm
# only on the top ops
max_subset, max_mi = compute_brute_force_sol(cov_top_ops, max_final_edges)
# note that elements of max_subset are indices into top_ops only
selected_edges = []
for ind in max_subset:
edge, op, alpha, edge_num = top_ops[ind]
op_desc, _ = op.finalize()
new_edge = EdgeDesc(op_desc, edge.input_ids)
logger.info(f'selected edge: {edge_num}, op: {op_desc.name}')
selected_edges.append(new_edge)
# save diagnostic information to disk
expdir = get_expdir()
sns.heatmap(cov_top_ops, annot=True, fmt='.1g', cmap='coolwarm')
savename = os.path.join(
expdir, f'cell_{cell.desc.id}_node_{node_id}_cov.png')
plt.savefig(savename)
logger.info('')
return NodeDesc(selected_edges, node_desc.conv_params)
def search(self, conf_search: Config, model_desc_builder: ModelDescBuilder,
trainer_class: TArchTrainer,
finalizers: Finalizers) -> SearchResult:
logger.pushd('search')
# region config vars
self.conf_search = conf_search
conf_checkpoint = conf_search['checkpoint']
resume = conf_search['resume']
conf_post_train = conf_search['post_train']
final_desc_foldername = conf_search['final_desc_foldername']
conf_petridish = conf_search['petridish']
# petridish distributed search related parameters
self._convex_hull_eps = conf_petridish['convex_hull_eps']
self._sampling_max_try = conf_petridish['sampling_max_try']
self._max_madd = conf_petridish['max_madd']
self._max_hull_points = conf_petridish['max_hull_points']
self._checkpoints_foldername = conf_petridish['checkpoints_foldername']
# endregion
self._checkpoint = nas_utils.create_checkpoint(conf_checkpoint, resume)
# parent models list
self._hull_points: List[ConvexHullPoint] = []
self._ensure_dataset_download(conf_search)
# checkpoint will restore the hull we had
is_restored = self._restore_checkpoint()
# seed the pool with many seed models of different
# macro parameters like number of cells, reductions etc if parent pool
# could not be restored and/or this is the first time this job has been run.
future_ids = [] if is_restored else self._create_seed_jobs(
conf_search, model_desc_builder)
while not self._is_search_done():
logger.info(f'Ray jobs running: {len(future_ids)}')
if future_ids:
# get first completed job
job_id_done, future_ids = ray.wait(future_ids)
hull_point = ray.get(job_id_done[0])
logger.info(
f'Hull point id {hull_point.id} with stage {hull_point.job_stage.name} completed'
)
if hull_point.is_trained_stage():
self._update_convex_hull(hull_point)
# sample a point and search
sampled_point = sample_from_hull(self._hull_points,
self._convex_hull_eps,
self._sampling_max_try)
future_id = SearcherPetridish.search_model_desc_dist.remote(
self, conf_search, sampled_point, model_desc_builder,
trainer_class, finalizers, common.get_state())
future_ids.append(future_id)
logger.info(
f'Added sampled point {sampled_point.id} for search')
elif hull_point.job_stage == JobStage.SEARCH:
# create the job to train the searched model
future_id = SearcherPetridish.train_model_desc_dist.remote(
self, conf_post_train, hull_point, common.get_state())
future_ids.append(future_id)
logger.info(
f'Added sampled point {hull_point.id} for post-search training'
)
else:
raise RuntimeError(
f'Job stage "{hull_point.job_stage}" is not expected in search loop'
)
# cancel any remaining jobs to free up gpus for the eval phase
for future_id in future_ids:
ray.cancel(future_id,
force=True) # without force, main process stops
ray.wait([future_id])
# plot and save the hull
expdir = common.get_expdir()
assert expdir
plot_frontier(self._hull_points, self._convex_hull_eps, expdir)
best_point = save_hull_frontier(self._hull_points,
self._convex_hull_eps,
final_desc_foldername, expdir)
save_hull(self._hull_points, expdir)
plot_pool(self._hull_points, expdir)
# return best point as search result
search_result = SearchResult(best_point.model_desc,
search_metrics=None,
train_metrics=best_point.metrics)
self.clean_log_result(conf_search, search_result)
logger.popd()
return search_result
def fit(self, data_loaders: data.DataLoaders) -> Metrics:
logger.pushd(self._title)
assert data_loaders.train_dl is not None
self._metrics = Metrics(self._title,
self._apex,
logger_freq=self._logger_freq)
# create optimizers and schedulers
self._multi_optim = self.create_multi_optim(len(data_loaders.train_dl))
# before checkpoint restore, convert to amp
self.model = self._apex.to_amp(
self.model,
self._multi_optim,
batch_size=data_loaders.train_dl.batch_size)
self._lossfn = self._lossfn.to(self.get_device())
self.pre_fit(data_loaders)
# we need to restore checkpoint after all objects are created because
# restoring checkpoint requires load_state_dict calls on these objects
self._start_epoch = 0
# do we have a checkpoint
checkpoint_avail = self._checkpoint is not None
checkpoint_val = checkpoint_avail and 'trainer' in self._checkpoint
resumed = False
if checkpoint_val:
# restore checkpoint
resumed = True
self.restore_checkpoint()
elif checkpoint_avail: # TODO: bad checkpoint?
self._checkpoint.clear()
logger.warn({
'resumed': resumed,
'checkpoint_avail': checkpoint_avail,
'checkpoint_val': checkpoint_val,
'start_epoch': self._start_epoch,
'total_epochs': self._epochs
})
logger.info({
'aux_weight': self._aux_weight,
'grad_clip': self._grad_clip,
'drop_path_prob': self._drop_path_prob,
'validation_freq': self._validation_freq,
'batch_chunks': self.batch_chunks
})
if self._start_epoch >= self._epochs:
logger.warn(
f'fit done because start_epoch {self._start_epoch}>={self._epochs}'
)
return self.get_metrics(
) # we already finished the run, we might be checkpointed
logger.pushd('epochs')
for epoch in range(self._start_epoch, self._epochs):
logger.pushd(epoch)
self._set_epoch(epoch, data_loaders)
self.pre_epoch(data_loaders)
self._train_epoch(data_loaders.train_dl)
self.post_epoch(data_loaders)
logger.popd()
logger.popd()
self.post_fit(data_loaders)
# make sure we don't keep references to the graph
del self._multi_optim
logger.popd()
return self.get_metrics()
def _train_dist(evaluater: Evaluater, conf_eval: Config,
model_desc_builder: ModelDescBuilder,
model_desc_filename: str, common_state) -> ConvexHullPoint:
"""Train given a model"""
common.init_from(common_state)
# region config vars
conf_model_desc = conf_eval['model_desc']
max_cells = conf_model_desc['n_cells']
conf_checkpoint = conf_eval['checkpoint']
resume = conf_eval['resume']
conf_petridish = conf_eval['petridish']
cell_count_scale = conf_petridish['cell_count_scale']
#endregion
#register ops as we are in different process now
model_desc_builder.pre_build(conf_model_desc)
model_filename = utils.append_to_filename(model_desc_filename,
'_model', '.pt')
full_desc_filename = utils.append_to_filename(model_desc_filename,
'_full', '.yaml')
metrics_filename = utils.append_to_filename(model_desc_filename,
'_metrics', '.yaml')
model_stats_filename = utils.append_to_filename(
model_desc_filename, '_model_stats', '.yaml')
# DEBUG
print(f'received {model_desc_filename}')
# create checkpoint for this specific model desc by changing the config
checkpoint = None
if conf_checkpoint is not None:
conf_checkpoint['filename'] = model_filename.split(
'.')[0] + '_checkpoint.pth'
checkpoint = nas_utils.create_checkpoint(conf_checkpoint, resume)
if checkpoint is not None and resume:
if 'metrics_stats' in checkpoint:
# return the output we had recorded in the checkpoint
convex_hull_point = checkpoint['metrics_stats']
return convex_hull_point
# template model is what we used during the search
template_model_desc = ModelDesc.load(model_desc_filename)
# we first scale this model by number of cells, keeping reductions same as in search
n_cells = math.ceil(
len(template_model_desc.cell_descs()) * cell_count_scale)
n_cells = min(n_cells, max_cells)
# DEBUG
print(
f'{model_desc_filename} has {len(template_model_desc.cell_descs())} cells, scaling to {n_cells} cells via {cell_count_scale} factor'
)
conf_model_desc = copy.deepcopy(conf_model_desc)
conf_model_desc['n_cells'] = n_cells
conf_model_desc[
'n_reductions'] = n_reductions = template_model_desc.cell_type_count(
CellType.Reduction)
model_desc = model_desc_builder.build(conf_model_desc,
template=template_model_desc)
# save desc for reference
model_desc.save(full_desc_filename)
model = evaluater.model_from_desc(model_desc)
train_metrics = evaluater.train_model(conf_eval, model, checkpoint)
train_metrics.save(metrics_filename)
# get metrics_stats
model_stats = nas_utils.get_model_stats(model)
# save metrics_stats
with open(model_stats_filename, 'w') as f:
yaml.dump(model_stats, f)
# save model
if model_filename:
model_filename = utils.full_path(model_filename)
ml_utils.save_model(model, model_filename)
logger.info({'model_save_path': model_filename})
hull_point = ConvexHullPoint(
JobStage.EVAL_TRAINED,
0,
0,
model_desc,
(n_cells, n_reductions, len(model_desc.cell_descs()[0].nodes())),
metrics=train_metrics,
model_stats=model_stats)
if checkpoint:
checkpoint.new()
checkpoint['metrics_stats'] = hull_point
checkpoint.commit()
return hull_point