def update_galaxy():
"""Update the user apikey
Returns
-------
json
The user with his new apikey
"""
data = request.get_json()
if not (data and data.get("gurl") and data.get("gkey")):
return jsonify({
'error': True,
'errorMessage': "Missing parameters",
'user': session["user"]
}), 400
local_auth = LocalAuth(current_app, session)
if session["user"]["galaxy"]:
updated_user = local_auth.update_galaxy_account(
session["user"], data["gurl"], data["gkey"])
else:
updated_user = local_auth.add_galaxy_account(session["user"],
data["gurl"],
data["gkey"])
session["user"] = updated_user["user"]
current_app.logger.debug(updated_user["user"])
return jsonify({
'error': updated_user['error'],
'errorMessage': updated_user['error_message'],
'user': updated_user['user']
})
def main(self):
"""Insert the user and the eventualy galaxy account"""
# Inseret user in database
inputs = {
"fname": self.args.first_name,
"lname": self.args.last_name,
"username": self.args.username,
"email": self.args.email,
"password": self.args.password,
"apikey": self.args.api_key
}
local_auth = LocalAuth(self.application, self.session)
if local_auth.get_number_of_users() > 0:
self.application.logger.error(
"Database is not empty, user {} will not be created".format(
self.args.username))
return
self.application.logger.info("Create user {}".format(
self.args.username))
self.user = local_auth.persist_user(inputs)
self.session["user"] = self.user
local_auth.create_user_directories(self.user["id"],
self.user["username"])
# insert Galaxy account if set
if self.args.galaxy_url and self.args.galaxy_apikey:
result = local_auth.add_galaxy_account(self.user,
self.args.galaxy_url,
self.args.galaxy_apikey)
self.user = result["user"]
def create_user(self, username):
"""Summary
Parameters
----------
username : TYPE
Description
Returns
-------
TYPE
Description
"""
galaxy = None
if username == "jdoe":
galaxy = {"url": "http://*****:*****@askomics.org"
if username == "jdoe" else "*****@*****.**",
"apikey": "0000000001" if username == "jdoe" else "0000000002",
"galaxy": None,
"quota": 0 if username == "jdoe" else 0,
}
auth = LocalAuth(self.app, self.session)
user = auth.persist_user(uinfo)
if galaxy:
self.session["user"] = user
user = auth.add_galaxy_account(user, galaxy["url"],
galaxy["apikey"])["user"]
self.session = {}
auth.create_user_directories(user["id"], user["username"])
return user