def main():
parser = OptionParser("usage: %prog [options] config_file.json "
"[config_file2.json, ...]"
"\n\nAtention:\ncalib, raw and product folder must"
"be set in the config files!"
"\n\nUse -vvv for DEBUG.")
parser.add_option("-v", "--verbose", dest="verbose",
action="count",
help="Enable 'DEBUG' output in python log")
parser.add_option("-e", "--skip-exist", dest="check_exist",
action="store_true",
default=False,
help="Skip if the product file already exists.")
parser.add_option("-r", "--raise-error", dest="raise_error",
action="store_true",
default=False,
help="Raise errors instead of just log them.")
parser.add_option("-i", "--include", dest="include_file",
default=None, metavar="FILE",
help="Preload FILE config before run the code.")
parser.add_option("-p", "--product", dest="product",
default=None, metavar="NAME",
help="Product ID inside the configure files.")
parser.add_option("-l", "--save-log", dest="save_log",
default=None, metavar="FILE",
help="Save log to FILE. If '%date' value, automatic name"
" based on date will be created.")
(options, args) = parser.parse_args()
if len(args) < 1:
raise ValueError('No raw folder passed!')
files = args
if options.verbose is None:
logger.setLevel('WARN')
elif options.verbose == 1:
logger.setLevel('INFO')
else:
logger.setLevel('DEBUG')
pipe = MasterPipeline()
if options.include_file is not None:
pipe.load_default_file(options.include_file)
def _process():
for f in files:
if options.product is not None:
pipe.process_product(f, dataset=options.product,
check_exist=options.check_exist,
raise_error=options.raise_error)
else:
pipe.process_product(f, check_exist=options.check_exist,
raise_error=options.raise_error)
if options.save_log is not None:
name = options.save_log
if name == '%date':
d = datetime.datetime.now()
d = d.isoformat(timespec='seconds')
name = "astropop_{}.log".format(d)
with logger.log_to_file(name):
_process()
else:
_process()
def main():
parser = OptionParser("usage: %prog [options] raw_dir [raw_dir2, ...]")
parser.add_option("-s",
"--stack",
action="store_true",
dest="stack_images",
default=False,
help="Stack all science images in one (sum)")
parser.add_option("-i",
"--individual",
action="store_true",
dest="save_calibed",
default=True,
help="Save individual calibed science images "
"in 'calib_images' subfolder")
parser.add_option("-v",
"--verbose",
dest="verbose",
action="store_true",
default=False,
help="Enable 'DEBUG' output in python log")
parser.add_option("-a",
"--astrometry",
dest="astrometry",
action="store_true",
default=False,
help="Enable astrometry solving of stacked images "
"with astrometry.net")
parser.add_option("-n",
"--science-catalog",
dest="science_catalog",
default=None,
metavar="FILE",
help="ASCII catalog to identify science stars. "
"Has to be astropy's table readable with columns "
"ID, RA, DEC")
parser.add_option("-l",
"--save-log",
dest="save_log",
default=None,
metavar="FILE",
help="Save log to FILE. If '%date' value, automatic name"
" based on date will be created.")
parser.add_option("-d",
"--dest",
dest="reduced_folder",
default='~/astropop_reduced',
metavar="FOLDER",
help="Reduced images (and created calib frames) will "
"be saved at inside FOLDER")
parser.add_option("-c",
"--calib",
dest="calib_folder",
default=None,
metavar="FOLDER",
help="Load/save calibration frames from/in FOLDER. "
"If not set, reduced_folder/calib will be used"
" instead.")
(options, args) = parser.parse_args()
if len(args) < 1:
raise ValueError('No raw folder passed!')
raw_dirs = args
if options.verbose:
logger.setLevel('DEBUG')
else:
logger.setLevel('INFO')
stack_images = options.stack_images
individual = options.save_calibed
astrometry = options.astrometry
reduced_folder = os.path.expanduser(options.reduced_folder)
reduced_folder = os.path.abspath(reduced_folder)
mkdir_p(reduced_folder)
if options.calib_folder is not None:
calib_folder = os.path.expanduser(options.calib_folder)
calib_folder = os.path.abspath(calib_folder)
else:
calib_folder = os.path.join(reduced_folder, 'calib')
sci_cat = options.science_catalog
if sci_cat is not None:
sci_cat = ASCIICatalogClass(sci_cat,
id_key='ID',
ra_key='RA',
dec_key='DEC',
format='ascii')
mkdir_p(reduced_folder)
pipe = ImpactonCalib(product_dir=reduced_folder,
calib_dir=calib_folder,
ext=0,
fits_extensions=['.fit'],
compression=True)
if stack_images:
pipe_phot = ImpactonStackedPhotometry(product_dir=reduced_folder,
image_ext=0)
else:
pipe_lc = ImpactonLightCurve(product_dir=reduced_folder, image_ext=0)
def _process():
for fold in raw_dirs:
prods = pipe.run(fold,
stack_images=stack_images,
save_calibed=individual,
astrometry=astrometry)
if stack_images:
pipe_phot.process_products(prods, sci_cat)
else:
pipe_lc.process_products(prods)
if options.save_log is not None:
name = options.save_log
if name == '%date':
d = datetime.datetime.now()
d = d.isoformat(timespec='seconds')
name = "astropop_{}.log".format(d)
name = os.path.join(reduced_folder, name)
with logger.log_to_file(name):
_process()
else:
_process()
def main():
parser = OptionParser("usage: %prog [options] raw_dir [raw_dir2, ...]")
parser.add_option("-v", "--verbose", dest="verbose",
action="store_true",
default=False,
help="Enable 'DEBUG' output in python log")
parser.add_option("-a", "--astrometry", dest="astrometry",
action="store_true",
default=False,
help="Enable astrometry solving of stacked images "
"with astrometry.net")
parser.add_option("-n", "--science-catalog", dest="science_catalog",
default=None, metavar="FILE",
help="ASCII catalog to identify science stars. "
"Has to be astropy's table readable with columns "
"ID, RA, DEC")
parser.add_option("-l", "--save-log", dest="save_log",
default=None, metavar="FILE",
help="Save log to FILE. If '%date' value, automatic name"
" based on date will be created.")
parser.add_option("-d", "--dest", dest="reduced_folder",
default='~/astropop_reduced', metavar="FOLDER",
help="Reduced images (and created calib frames) will "
"be saved at inside FOLDER")
(options, args) = parser.parse_args()
if len(args) < 1:
raise ValueError('No raw folder passed!')
raw_dirs = args
if options.verbose:
logger.setLevel('DEBUG')
else:
logger.setLevel('INFO')
reduced_folder = os.path.expanduser(options.reduced_folder)
reduced_folder = os.path.abspath(reduced_folder)
mkdir_p(reduced_folder)
sci_cat = options.science_catalog
if sci_cat is not None:
sci_cat = ASCIICatalogClass(sci_cat, id_key='ID', ra_key='RA',
dec_key='DEC', format='ascii')
mkdir_p(reduced_folder)
pipe_phot = BSMStackedPhotometry(product_dir=reduced_folder, image_ext=0)
def _process():
for fold in raw_dirs:
pipe_phot.run(fold, sci_cat, options.astrometry)
if options.save_log is not None:
name = options.save_log
if name == '%date':
d = datetime.datetime.now()
d = d.isoformat(timespec='seconds')
name = "astropop_{}.log".format(d)
name = os.path.join(reduced_folder, name)
with logger.log_to_file(name):
_process()
else:
_process()