def test_single_zenith_source_uvdata():
"""Test single zenith source using test uvdata file."""
hera_uv = UVData()
hera_uv.read_uvfits(EW_uvfits_file)
time = Time(hera_uv.time_array[0], scale='utc', format='jd')
array_location = EarthLocation.from_geocentric(
hera_uv.telescope_location[0],
hera_uv.telescope_location[1],
hera_uv.telescope_location[2],
unit='m')
freq = hera_uv.freq_array[0, 0] * units.Hz
# get antennas positions into ENU
antpos = hera_uv.antenna_positions[0:2, :] + hera_uv.telescope_location
antpos = uvutils.ENU_from_ECEF(antpos.T,
*hera_uv.telescope_location_lat_lon_alt).T
antenna1 = pyuvsim.Antenna('ant1', 1, np.array(antpos[0, :]), 0)
antenna2 = pyuvsim.Antenna('ant2', 2, np.array(antpos[1, :]), 0)
# setup the things that don't come from pyuvdata:
# make a source at zenith
time.location = array_location
source = create_zenith_source(time, 'zensrc')
beam = UVBeam()
beam.read_cst_beam(beam_files,
beam_type='efield',
frequency=[100e6, 123e6],
telescope_name='HERA',
feed_name='PAPER',
feed_version='0.1',
feed_pol=['x'],
model_name='E-field pattern - Rigging height 4.9m',
model_version='1.0')
beam_list = [beam]
baseline = pyuvsim.Baseline(antenna1, antenna2)
array = pyuvsim.Telescope('telescope_name', array_location, beam_list)
task = pyuvsim.UVTask(source, time, freq, baseline, array)
engine = pyuvsim.UVEngine(task)
visibility = engine.make_visibility()
nt.assert_true(np.allclose(visibility, np.array([.5, .5, 0, 0]),
atol=5e-3))
def test_add_obs(self):
t1 = Time('2016-01-10 01:15:23', scale='utc')
t2 = t1 + TimeDelta(120.0, format='sec')
# t1.delta_ut1_utc = mc.iers_a.ut1_utc(t1)
# t2.delta_ut1_utc = mc.iers_a.ut1_utc(t2)
from math import floor
obsid = floor(t1.gps)
t1.location = EarthLocation.from_geodetic(observations.HERA_LON, observations.HERA_LAT)
expected = [observations.Observation(obsid=obsid, start_time_jd=t1.jd,
stop_time_jd=t2.jd,
lst_start_hr=t1.sidereal_time('apparent').hour)]
self.test_session.add(observations.Observation.new_with_astropy(t1, t2))
result = self.test_session.get_obs()
self.assertEqual(result, expected)
def height_time(coord, time, time_left=False, limalt=0.0*u.deg, site=EarthLocation(0.0, 0.0, 0.0), fuse=TimeDelta(0, format='sec', scale='tai')):
"""
"""
coord = coord_pack(coord)
timeut = time - fuse
if len(time.shape) == 1:
timeut = Time([[i] for i in timeut.jd], format='jd', scale='utc')
timeut.location = site
timeut.delta_ut1_utc = 0
ra, ts = mesh_coord(coord, timeut)
hourangle = Angle(ts-ra)
distzen = np.arccos(np.sin(coord.dec)*np.sin(site.latitude) + np.cos(coord.dec)*np.cos(site.latitude)*np.cos(hourangle))
altura = 90*u.deg - distzen
if time_left == True:
poente = sky_time(coord, time, rise_set=True, limalt=limalt, site=site, fuse=fuse)[2]
time_rest = poente - time
return altura, time_rest
return altura
def sky_time(coord, time, rise_set=False, limalt=0*u.deg, site=EarthLocation(0.0, 0.0, 0.0), fuse=TimeDelta(0, format='sec', scale='tai')):
"""
"""
if type(limalt) != u.quantity.Quantity:
limalt = limalt*u.deg
if time.isscalar == True:
time = Time([time.iso], format='iso', scale='utc')
coord = coord_pack(coord)
timeut = time - fuse
if len(time.shape) == 1:
timeut = Time([[i] for i in timeut.jd], format='jd', scale='utc')
timeut.delta_ut1_utc = 0
timeut.location = site
ra, ts = mesh_coord(coord, timeut[:,0])
dif_h_sid = Angle(ra-ts)
dif_h_sid.wrap_at('180d', inplace=True)
dif_h_sol = dif_h_sid * (23.0 + 56.0/60.0 + 4.0916/3600.0) / 24.0
dif = TimeDelta(dif_h_sol.hour*u.h, scale='tai')
culminacao = timeut + dif
culminacao.delta_ut1_utc = 0
culminacao.location = site
if (site.latitude > 0*u.deg):
alwaysup = np.where(coord.dec >= 90*u.deg - site.latitude + limalt)
neverup = np.where(coord.dec <= -(90*u.deg - site.latitude - limalt))
else:
alwaysup = np.where(coord.dec <= -(90*u.deg + site.latitude + limalt))
neverup = np.where(coord.dec >= 90*u.deg + site.latitude - limalt)
if rise_set == True:
hangle_lim = np.arccos((np.cos(90.0*u.deg-limalt) - np.sin(coord.dec)*np.sin(site.latitude)) / (np.cos(coord.dec)*np.cos(site.latitude)))
tsg_lim = Angle(ra + hangle_lim)
dtsg_lim = tsg_lim - culminacao.sidereal_time('mean')
dtsg_lim.wrap_at(360 * u.deg, inplace=True)
dtsg_lim_sol = dtsg_lim * (23.0 + 56.0/60.0 + 4.0916/3600.0) / 24.0
a = np.where(np.isnan(dtsg_lim_sol))
dtsg_lim_sol[a] = Angle([48.0]*len(a[0])*u.hour)
dtsg_np = TimeDelta((dtsg_lim_sol.hour*u.h))
sunrise = culminacao - dtsg_np
sunset = culminacao + dtsg_np
culminacao = culminacao + fuse
sunrise = sunrise + fuse
sunset = sunset + fuse
return culminacao, sunrise, sunset, alwaysup, neverup
culminacao = culminacao + fuse
return culminacao, alwaysup, neverup
def sky_time(coord, time, rise_set=False, limalt=0*u.deg, site=EarthLocation(0.0, 0.0, 0.0), fuse=TimeDelta(0, format='sec', scale='tai')):
"""
"""
if type(limalt) != u.quantity.Quantity:
limalt = limalt*u.deg
if time.isscalar == True:
time = Time([time.iso], format='iso', scale='utc')
coord = coord_pack(coord)
timeut = time - fuse
if len(time.shape) == 1:
timeut = Time([[i] for i in timeut.jd], format='jd', scale='utc')
timeut.delta_ut1_utc = 0
timeut.location = site
ra, ts = mesh_coord(coord, timeut)
dif_h_sid = Angle(ra-ts)
dif_h_sid.wrap_at('180d', inplace=True)
dif_h_sol = dif_h_sid * (23.0 + 56.0/60.0 + 4.0916/3600.0) / 24.0
dif = TimeDelta(dif_h_sol.hour*u.h, scale='tai')
culminacao = timeut + dif
culminacao.delta_ut1_utc = 0
culminacao.location = site
if rise_set == True:
hangle_lim = np.arccos((np.cos(90.0*u.deg-limalt) - np.sin(coord.dec)*np.sin(site.latitude)) / (np.cos(coord.dec)*np.cos(site.latitude)))
tsg_lim = Angle(ra + hangle_lim)
dtsg_lim = tsg_lim - culminacao.sidereal_time('mean')
dtsg_lim.wrap_at(360 * u.deg, inplace=True)
dtsg_lim_sol = dtsg_lim * (23.0 + 56.0/60.0 + 4.0916/3600.0) / 24.0
a = np.where(np.isnan(dtsg_lim_sol))
dtsg_lim_sol[a] = Angle([48.0]*len(a[0])*u.hour)
dtsg_np = TimeDelta((dtsg_lim_sol.hour*u.h))
sunrise = culminacao - dtsg_np
sunset = culminacao + dtsg_np
if (site.latitude > 0*u.deg):
alwaysup = np.where(coord.dec >= 90*u.deg - site.latitude + limalt)
neverup = np.where(coord.dec <= -(90*u.deg - site.latitude - limalt))
else:
alwaysup = np.where(coord.dec <= -(90*u.deg + site.latitude + limalt))
neverup = np.where(coord.dec >= 90*u.deg + site.latitude - limalt)
culminacao = culminacao + fuse
sunrise = sunrise + fuse
sunset = sunset + fuse
return culminacao, sunrise, sunset, alwaysup, neverup
culminacao = culminacao + fuse
return culminacao
def test_add_obs(mcsession):
test_session = mcsession
t1 = Time('2016-01-10 01:15:23', scale='utc')
t2 = t1 + TimeDelta(120.0, format='sec')
# generated test hera_lat, hera_lon using the output of geo.py -c
# with this website:
# http://www.uwgb.edu/dutchs/usefuldata/ConvertUTMNoOZ.HTM
obsid_calc = int(floor(t1.gps))
obsid = utils.calculate_obsid(t1)
assert obsid_calc == obsid
t1.location = EarthLocation.from_geodetic(21.4283038269, -30.7215261207)
expected = Observation(obsid=obsid,
starttime=t1.gps,
stoptime=t2.gps,
jd_start=t1.jd,
lst_start_hr=t1.sidereal_time('apparent').hour)
test_session.add_obs(t1, t2, obsid)
result = test_session.get_obs()
assert len(result) == 1
result = result[0]
assert result.length == 120.0
assert result.isclose(expected)
t3 = t1 + TimeDelta(10 * 60., format='sec')
t4 = t2 + TimeDelta(10 * 60., format='sec')
test_session.add_obs(t3, t4, utils.calculate_obsid(t3))
result_mult = test_session.get_obs_by_time(starttime=t1, stoptime=t4)
assert len(result_mult) == 2
result_most_recent = test_session.get_obs_by_time(most_recent=True)
assert result_most_recent[0] == result_mult[1]
result_orig = test_session.get_obs(obsid=obsid)
assert len(result_orig) == 1
result_orig = result_orig[0]
assert result_orig.isclose(expected)
def test_single_zenith_source():
"""Test single zenith source."""
time = Time('2018-03-01 00:00:00', scale='utc')
array_location = EarthLocation(lat='-30d43m17.5s',
lon='21d25m41.9s',
height=1073.)
time.location = array_location
freq = (150e6 * units.Hz)
source = create_zenith_source(time, 'zensrc')
antenna1 = pyuvsim.Antenna('ant1', 1, np.array([0, 0, 0]), 0)
antenna2 = pyuvsim.Antenna('ant2', 2, np.array([107, 0, 0]), 0)
baseline = pyuvsim.Baseline(antenna1, antenna2)
beam = UVBeam()
beam.read_cst_beam(beam_files,
beam_type='efield',
frequency=[150e6, 123e6],
telescope_name='HERA',
feed_name='PAPER',
feed_version='0.1',
feed_pol=['x'],
model_name='E-field pattern - Rigging height 4.9m',
model_version='1.0')
beam_list = [beam]
array = pyuvsim.Telescope('telescope_name', array_location, beam_list)
task = pyuvsim.UVTask(source, time, freq, baseline, array)
engine = pyuvsim.UVEngine(task)
visibility = engine.make_visibility()
nt.assert_true(np.allclose(visibility, np.array([.5, .5, 0, 0]),
atol=5e-3))
def test_add_obs(self):
t1 = Time('2016-01-10 01:15:23', scale='utc')
t2 = t1 + TimeDelta(120.0, format='sec')
# t1.delta_ut1_utc = mc.iers_a.ut1_utc(t1)
# t2.delta_ut1_utc = mc.iers_a.ut1_utc(t2)
from math import floor
obsid = floor(t1.gps)
t1.location = EarthLocation.from_geodetic(observations.HERA_LON,
observations.HERA_LAT)
expected = [
observations.Observation(
obsid=obsid,
start_time_jd=t1.jd,
stop_time_jd=t2.jd,
lst_start_hr=t1.sidereal_time('apparent').hour)
]
self.test_session.add(observations.Observation.new_with_astropy(
t1, t2))
result = self.test_session.get_obs()
self.assertEqual(result, expected)
def test_redundant_baselines():
"""Check that two perfectly redundant baselines are truly redundant. """
hera_uv = UVData()
hera_uv.read_uvfits(EW_uvfits_file, ant_str='cross')
hera_uv.unphase_to_drift()
src_az = Angle('90.0d')
src_alt = Angle('85.0d')
src_za = Angle('90.0d') - src_alt
src_l = np.sin(src_az.rad) * np.sin(src_za.rad)
src_m = np.cos(src_az.rad) * np.sin(src_za.rad)
src_n = np.cos(src_za.rad)
time = Time(hera_uv.time_array[0], scale='utc', format='jd')
array_location = EarthLocation.from_geocentric(
hera_uv.telescope_location[0],
hera_uv.telescope_location[1],
hera_uv.telescope_location[2],
unit='m')
freq = hera_uv.freq_array[0, 0] * units.Hz
# get antennas positions into ENU
antpos, _ = hera_uv.get_ENU_antpos()
en_shift = [5., 5., 0]
antenna1 = pyuvsim.Antenna('ant1', 1, np.array(antpos[0, :]), 0)
antenna2 = pyuvsim.Antenna('ant2', 2, np.array(antpos[1, :]), 0)
antenna3 = pyuvsim.Antenna('ant3', 3, np.array(antpos[0, :]) + en_shift, 0)
antenna4 = pyuvsim.Antenna('ant4', 4, np.array(antpos[1, :]) + en_shift, 0)
# setup the things that don't come from pyuvdata:
# make a source off zenith
time.location = array_location
source = create_offzenith_source(time, 'offzensrc', az=src_az, alt=src_alt)
beam = UVBeam()
beam.read_cst_beam(beam_files,
beam_type='efield',
frequency=[100e6, 123e6],
telescope_name='HERA',
feed_name='PAPER',
feed_version='0.1',
feed_pol=['x'],
model_name='E-field pattern - Rigging height 4.9m',
model_version='1.0')
beam_list = [beam]
baseline1 = pyuvsim.Baseline(antenna1, antenna2)
baseline2 = pyuvsim.Baseline(antenna3, antenna4)
print('Baseline1 uvw: ', baseline1.uvw)
print('Baseline2 uvw: ', baseline2.uvw)
print('Baseline1 enus: ', baseline1.antenna1.pos_enu,
baseline1.antenna2.pos_enu)
print('Baseline2 enus: ', baseline2.antenna1.pos_enu,
baseline2.antenna2.pos_enu)
array = pyuvsim.Telescope('telescope_name', array_location, beam_list)
task1 = pyuvsim.UVTask(source, time, freq, baseline1, array)
engine = pyuvsim.UVEngine(task1)
visibility1 = engine.make_visibility()
task2 = pyuvsim.UVTask(source, time, freq, baseline2, array)
engine = pyuvsim.UVEngine(task2)
visibility2 = engine.make_visibility()
nt.assert_true(np.allclose(visibility1, visibility2))
def test_source_below_horizon():
time = Time('2018-03-01 00:00:00', scale='utc')
array_location = EarthLocation(lat='-30d43m17.5s',
lon='21d25m41.9s',
height=1073.)
time.location = array_location
freq = (150e6 * units.Hz)
source = create_offzenith_source(time,
'src_down',
az=Angle('0d'),
alt=Angle('-40d'))
antenna1 = pyuvsim.Antenna('ant1', 1, np.array([0, 0, 0]), 0)
antenna2 = pyuvsim.Antenna('ant2', 2, np.array([107, 0, 0]), 0)
baseline = pyuvsim.Baseline(antenna1, antenna2)
beam = UVBeam()
beam.read_cst_beam(beam_files,
beam_type='efield',
frequency=[150e6, 123e6],
telescope_name='HERA',
feed_name='PAPER',
feed_version='0.1',
feed_pol=['x'],
model_name='E-field pattern - Rigging height 4.9m',
model_version='1.0')
beam_list = [beam]
array = pyuvsim.Telescope('telescope_name', array_location, beam_list)
task = pyuvsim.UVTask(source, time, freq, baseline, array)
engine = pyuvsim.UVEngine(task)
visibility = engine.make_visibility()
nt.assert_true(np.allclose(visibility, np.array([0, 0, 0, 0])))
# redo with RA/Dec defined source
time = Time(2458098.27471265, format='jd')
time.location = array_location
source_coord = SkyCoord(ra=Angle('13h20m'),
dec=Angle('-30d43m17.5s'),
obstime=time,
frame='icrs',
location=array_location)
source = pyuvsim.Source('src_down', source_coord.ra, source_coord.dec,
freq, [1.0, 0, 0, 0])
task = pyuvsim.UVTask(source, time, freq, baseline, array)
engine = pyuvsim.UVEngine(task)
visibility = engine.make_visibility()
nt.assert_true(np.allclose(visibility, np.array([0, 0, 0, 0])))
def test_time_to_fits_loc(self, table_types):
"""
Test all the unusual conditions for locations of ``Time``
columns in a ``Table``.
"""
t = table_types()
t['a'] = Time(self.time, format='isot', scale='utc')
t['b'] = Time(self.time, format='isot', scale='tt')
# Check that vectorized location is stored using Green Bank convention
t['a'].location = EarthLocation([1., 2.], [2., 3.], [3., 4.],
unit='Mm')
with pytest.warns(
AstropyUserWarning,
match=r'Time Column "b" has no '
r'specified location, but global Time Position is present'):
table, hdr = time_to_fits(t)
assert (table['OBSGEO-X'] == t['a'].location.x.to_value(
unit='m')).all()
assert (table['OBSGEO-Y'] == t['a'].location.y.to_value(
unit='m')).all()
assert (table['OBSGEO-Z'] == t['a'].location.z.to_value(
unit='m')).all()
with pytest.warns(
AstropyUserWarning,
match=r'Time Column "b" has no '
r'specified location, but global Time Position is present'):
t.write(self.temp('time.fits'), format='fits', overwrite=True)
# Check that a blank value for the "TRPOSn" keyword is not generated
hdr = fits.getheader(self.temp('time.fits'), 1)
assert hdr.get('TRPOS2', None) is None
with pytest.warns(
AstropyUserWarning,
match=r'Time column reference position '
r'"TRPOSn" is not specified. The default value for it is '
r'"TOPOCENTER", and the observatory position has been specified.'
):
tm = table_types.read(self.temp('time.fits'),
format='fits',
astropy_native=True)
assert (tm['a'].location == t['a'].location).all()
assert tm['b'].location == t['b'].location
# Check that multiple Time columns with different locations raise an exception
t['a'].location = EarthLocation(1, 2, 3)
t['b'].location = EarthLocation(2, 3, 4)
with pytest.raises(ValueError) as err:
table, hdr = time_to_fits(t)
assert 'Multiple Time Columns with different geocentric' in str(
err.value)
# Check that Time column with no location specified will assume global location
t['b'].location = None
with catch_warnings() as w:
table, hdr = time_to_fits(t)
assert len(w) == 1
assert str(w[0].message).startswith(
'Time Column "b" has no specified '
'location, but global Time Position '
'is present')
# Check that multiple Time columns with same location can be written
t['b'].location = EarthLocation(1, 2, 3)
with catch_warnings() as w:
table, hdr = time_to_fits(t)
assert len(w) == 0
# Check compatibility of Time Scales and Reference Positions
for scale in BARYCENTRIC_SCALES:
t.replace_column('a', getattr(t['a'], scale))
with catch_warnings() as w:
table, hdr = time_to_fits(t)
assert len(w) == 1
assert str(w[0].message).startswith(
'Earth Location "TOPOCENTER" '
'for Time Column')
# Check that multidimensional vectorized location (ndim=3) is stored
# using Green Bank convention.
t = table_types()
location = EarthLocation([[[1., 2.], [1., 3.], [3., 4.]]],
[[[1., 2.], [1., 3.], [3., 4.]]],
[[[1., 2.], [1., 3.], [3., 4.]]],
unit='Mm')
t['a'] = Time(self.time_3d, format='jd', location=location)
table, hdr = time_to_fits(t)
assert (table['OBSGEO-X'] == t['a'].location.x.to_value(
unit='m')).all()
assert (table['OBSGEO-Y'] == t['a'].location.y.to_value(
unit='m')).all()
assert (table['OBSGEO-Z'] == t['a'].location.z.to_value(
unit='m')).all()
t.write(self.temp('time.fits'), format='fits', overwrite=True)
tm = table_types.read(self.temp('time.fits'),
format='fits',
astropy_native=True)
assert (tm['a'].location == t['a'].location).all()
# Check that singular location with ndim>1 can be written
t['a'] = Time(self.time,
location=EarthLocation([[[1.]]], [[[2.]]], [[[3.]]],
unit='Mm'))
table, hdr = time_to_fits(t)
assert hdr['OBSGEO-X'] == t['a'].location.x.to_value(unit='m')
assert hdr['OBSGEO-Y'] == t['a'].location.y.to_value(unit='m')
assert hdr['OBSGEO-Z'] == t['a'].location.z.to_value(unit='m')
t.write(self.temp('time.fits'), format='fits', overwrite=True)
tm = table_types.read(self.temp('time.fits'),
format='fits',
astropy_native=True)
assert tm['a'].location == t['a'].location
def test_time_to_fits_loc(self, table_types):
"""
Test all the unusual conditions for locations of ``Time``
columns in a ``Table``.
"""
t = table_types()
t['a'] = Time(self.time, format='isot', scale='utc')
t['b'] = Time(self.time, format='isot', scale='tt')
# Check that vectorized location is stored using Green Bank convention
t['a'].location = EarthLocation([1., 2.], [2., 3.], [3., 4.],
unit='Mm')
with pytest.warns(AstropyUserWarning, match='Time Column "b" has no '
'specified location, but global Time Position is present'):
table, hdr = time_to_fits(t)
assert (table['OBSGEO-X'] == t['a'].location.x.to_value(unit='m')).all()
assert (table['OBSGEO-Y'] == t['a'].location.y.to_value(unit='m')).all()
assert (table['OBSGEO-Z'] == t['a'].location.z.to_value(unit='m')).all()
with pytest.warns(AstropyUserWarning, match='Time Column "b" has no '
'specified location, but global Time Position is present'):
t.write(self.temp('time.fits'), format='fits', overwrite=True)
tm = table_types.read(self.temp('time.fits'), format='fits',
astropy_native=True)
assert (tm['a'].location == t['a'].location).all()
assert tm['b'].location == t['b'].location
# Check that multiple Time columns with different locations raise an exception
t['a'].location = EarthLocation(1, 2, 3)
t['b'].location = EarthLocation(2, 3, 4)
with pytest.raises(ValueError) as err:
table, hdr = time_to_fits(t)
assert 'Multiple Time Columns with different geocentric' in str(err.value)
# Check that Time column with no location specified will assume global location
t['b'].location = None
with catch_warnings() as w:
table, hdr = time_to_fits(t)
assert len(w) == 1
assert str(w[0].message).startswith('Time Column "b" has no specified '
'location, but global Time Position '
'is present')
# Check that multiple Time columns with same location can be written
t['b'].location = EarthLocation(1, 2, 3)
with catch_warnings() as w:
table, hdr = time_to_fits(t)
assert len(w) == 0
# Check compatibility of Time Scales and Reference Positions
for scale in BARYCENTRIC_SCALES:
t.replace_column('a', getattr(t['a'], scale))
with catch_warnings() as w:
table, hdr = time_to_fits(t)
assert len(w) == 1
assert str(w[0].message).startswith('Earth Location "TOPOCENTER" '
'for Time Column')
# Check that multidimensional vectorized location (ndim=3) is stored
# using Green Bank convention.
t = table_types()
location = EarthLocation([[[1., 2.], [1., 3.], [3., 4.]]],
[[[1., 2.], [1., 3.], [3., 4.]]],
[[[1., 2.], [1., 3.], [3., 4.]]], unit='Mm')
t['a'] = Time(self.time_3d, format='jd', location=location)
table, hdr = time_to_fits(t)
assert (table['OBSGEO-X'] == t['a'].location.x.to_value(unit='m')).all()
assert (table['OBSGEO-Y'] == t['a'].location.y.to_value(unit='m')).all()
assert (table['OBSGEO-Z'] == t['a'].location.z.to_value(unit='m')).all()
t.write(self.temp('time.fits'), format='fits', overwrite=True)
tm = table_types.read(self.temp('time.fits'), format='fits',
astropy_native=True)
assert (tm['a'].location == t['a'].location).all()
# Check that singular location with ndim>1 can be written
t['a'] = Time(self.time, location=EarthLocation([[[1.]]], [[[2.]]],
[[[3.]]], unit='Mm'))
table, hdr = time_to_fits(t)
assert hdr['OBSGEO-X'] == t['a'].location.x.to_value(unit='m')
assert hdr['OBSGEO-Y'] == t['a'].location.y.to_value(unit='m')
assert hdr['OBSGEO-Z'] == t['a'].location.z.to_value(unit='m')
t.write(self.temp('time.fits'), format='fits', overwrite=True)
tm = table_types.read(self.temp('time.fits'), format='fits',
astropy_native=True)
assert tm['a'].location == t['a'].location
tracklist = get_best_gridpoints(
gps_start=start_time.gps + 16, # Add 16 to allow for mode change
obs_source_ra_deg=options.obs_source_ra_deg,
obs_source_dec_deg=options.obs_source_dec_deg,
avoid_source_ra_deg=options.avoid_source_ra_deg,
avoid_source_dec_deg=options.avoid_source_dec_deg,
model=options.model,
min_gain=options.min_gain,
max_beam_distance_deg=options.max_beam_distance_deg,
channel=options.channel,
verb_level=1,
duration=options.duration,
step=step,
min_elevation=options.min_elevation)
start_time.location = config.MWAPOS
if options.outfile is None:
# 20170216_cmdfile_J112537_LST9.91.txt
outfile_name = ("%s_cmdfile_%s_LST%.4f_BeamModel-%s_mingain%.2f.txt" %
(start_time.datetime.strftime("%Y%m%d"), options.obj,
start_time.sidereal_time('mean').hour, options.model,
options.min_gain))
else:
outfile_name = options.outfile
creator = getpass.getuser()
outfile = open(outfile_name, 'a+')
outfile.write("# setting correlator mode :\n")
def get_skytemp(datetimestring, delays, frequency, alpha=-2.6, verbose=True):
"""
Tx,Ty=get_skytemp(datetimestring, delays, frequency, alpha=-2.6, verbose=True)
not completely sure about the normalization, since the Haslam FITS image is not specific
"""
su.init_data()
if not os.path.exists(config.RADIO_IMAGE_FILE):
logger.error("Could not find 408 MHz image: %s\n" %
(config.RADIO_IMAGE_FILE))
return None
try:
if (verbose):
print("Loading 408 MHz map from %s..." % config.RADIO_IMAGE_FILE)
f = pyfits.open(config.RADIO_IMAGE_FILE)
except Exception as e:
logger.error("Error opening 408 MHz image: %s\nError: %s\n" %
(config.RADIO_IMAGE_FILE, e))
return None
skymap = f[0].data[0]
ra = (f[0].header.get('CRVAL1') +
(numpy.arange(1, skymap.shape[1] + 1) - f[0].header.get('CRPIX1')) *
f[0].header.get('CDELT1')) / 15.0
dec = (f[0].header.get('CRVAL2') +
(numpy.arange(1, skymap.shape[0] + 1) - f[0].header.get('CRPIX2')) *
f[0].header.get('CDELT2'))
# parse the datetimestring
try:
yr = int(datetimestring[:4])
mn = int(datetimestring[4:6])
dy = int(datetimestring[6:8])
hour = int(datetimestring[8:10])
minute = int(datetimestring[10:12])
second = int(datetimestring[12:14])
except ValueError:
logger.error('Could not parse datetimestring %s\n' % datetimestring)
return None
# UT = hour + minute / 60.0 + second / 3600.0
UTs = '%02d:%02d:%02d' % (hour, minute, second)
a_obstime = Time('%d-%d-%d %s' % (yr, mn, dy, UTs), scale='utc')
a_obstime.delta_ut1_utc = 0
a_obstime.location = config.MWAPOS
if (verbose):
print("For %02d-%02d-%02d %s UT, LST=%6.3f" %
(yr, mn, dy, UTs, a_obstime.sidereal_time(kind='mean').hour))
RA, Dec = numpy.meshgrid(ra * 15, dec)
coords = SkyCoord(ra=RA,
dec=Dec,
equinox='J2000',
unit=(astropy.units.deg, astropy.units.deg))
coords.location = config.MWAPOS
coords.obstime = a_obstime
coords_prec = coords.transform_to('altaz')
Az, Alt = coords_prec.az.deg, coords_prec.alt.deg
if (verbose):
print("Creating primary beam response for frequency %.2f MHz..." %
(frequency))
print("Beamformer delays are %s" % delays)
# get the beam response
# first go from altitude to zenith angle
theta = (90 - Alt) * math.pi / 180
phi = Az * math.pi / 180
# this is the response for XX and YY
try:
respX, respY = primary_beam.MWA_Tile_analytic(
theta, phi, freq=frequency * 1e6, delays=numpy.array(delays))
except Exception as e:
logger.error('Error creating primary beams: %s\n' % e)
return None
rX = numpy.real(numpy.conj(respX) * respX)
rY = numpy.real(numpy.conj(respY) * respY)
maskedskymap = numpy.ma.array(skymap, mask=Alt <= 0)
maskedskymap *= (frequency / 408.0)**alpha
rX /= rX.sum()
rY /= rY.sum()
return ((rX * maskedskymap).sum()) / 10.0, (
(rY * maskedskymap).sum()) / 10.0
def test_offzenith_source_multibl_uvfits():
"""Test single off-zenith source using test uvdata file.
Calculate visibilities for a baseline triangle.
"""
hera_uv = UVData()
hera_uv.read_uvfits(
longbl_uvfits_file, ant_str='cross'
) # consists of a right triangle of baselines with w term
hera_uv.unphase_to_drift()
src_az = Angle('90.0d')
src_alt = Angle('85.0d')
src_za = Angle('90.0d') - src_alt
src_l = np.sin(src_az.rad) * np.sin(src_za.rad)
src_m = np.cos(src_az.rad) * np.sin(src_za.rad)
src_n = np.cos(src_za.rad)
time = Time(hera_uv.time_array[0], scale='utc', format='jd')
array_location = EarthLocation.from_geocentric(
hera_uv.telescope_location[0],
hera_uv.telescope_location[1],
hera_uv.telescope_location[2],
unit='m')
freq = hera_uv.freq_array[0, 0] * units.Hz
# get antennas positions into ENU
antpos, ants = hera_uv.get_ENU_antpos()
antenna1 = pyuvsim.Antenna('ant1', ants[0], np.array(antpos[0, :]), 0)
antenna2 = pyuvsim.Antenna('ant2', ants[1], np.array(antpos[1, :]), 0)
antenna3 = pyuvsim.Antenna('ant3', ants[2], np.array(antpos[2, :]), 0)
# setup the things that don't come from pyuvdata:
# make a source off zenith
time.location = array_location
source = create_offzenith_source(time, 'offzensrc', az=src_az, alt=src_alt)
# beam = UVBeam()
# beam.read_cst_beam(beam_files, beam_type='efield', frequency=[100e6, 123e6],
# telescope_name='HERA',
# feed_name='PAPER', feed_version='0.1', feed_pol=['x'],
# model_name='E-field pattern - Rigging height 4.9m',
# model_version='1.0')
beam = pyuvsim.AnalyticBeam('tophat')
beam_list = [beam]
baselines = [
pyuvsim.Baseline(antenna2, antenna1),
pyuvsim.Baseline(antenna3, antenna1),
pyuvsim.Baseline(antenna3, antenna2)
]
array = pyuvsim.Telescope('telescope_name', array_location, beam_list)
tasks = [pyuvsim.UVTask(source, time, freq, bl, array) for bl in baselines]
visibilities = []
uvws = []
for t in tasks:
engine = pyuvsim.UVEngine(t)
visibilities.append(engine.make_visibility())
uvws.append(t.baseline.uvw)
uvws = np.array(uvws)
# analytically calculate visibilities
beam.peak_normalize()
beam.interpolation_function = 'az_za_simple'
interpolated_beam, interp_basis_vector = beam.interp(
az_array=np.array([src_az.rad]),
za_array=np.array([src_za.rad]),
freq_array=np.array([freq.to('Hz').value]))
jones = np.zeros((2, 2), dtype=np.complex64)
jones[0, 0] = interpolated_beam[1, 0, 0, 0, 0]
jones[1, 1] = interpolated_beam[0, 0, 1, 0, 0]
jones[1, 0] = interpolated_beam[1, 0, 1, 0, 0]
jones[0, 1] = interpolated_beam[0, 0, 0, 0, 0]
uvw_wavelength_array = hera_uv.uvw_array[
0:hera_uv.Nbls] * units.m / const.c * freq.to('1/s')
visibilities_analytic = []
for u, v, w in uvw_wavelength_array:
vis = 0.5 * np.dot(
jones,
np.conj(jones).T) * np.exp(2j * np.pi *
(u * src_l + v * src_m + w * src_n))
visibilities_analytic.append(
np.array([vis[0, 0], vis[1, 1], vis[1, 0], vis[0, 1]]))
print('pyuvsim uvws: ', np.around(uvws))
print('file uvws: ', np.around(hera_uv.uvw_array[0:hera_uv.Nbls]))
print('Difference: ', uvws - hera_uv.uvw_array[0:hera_uv.Nbls])
# the file used different phasing code than the test uses -- increase the tolerance
nt.assert_true(
np.allclose(uvws, hera_uv.uvw_array[0:hera_uv.Nbls], atol=1e-4))
print('Analytic visibility', visibilities_analytic)
print('Calculated visibility', visibilities)
print(np.array(visibilities) - np.array(visibilities_analytic))
# the file used different phasing code than the test uses -- increase the tolerance
nt.assert_true(np.allclose(visibilities, visibilities_analytic, atol=1e-4))
def test_single_offzenith_source_miriad():
"""Test single off-zenith source using test uvdata file."""
miriad_uv = UVData()
miriad_uv.read_miriad(os.path.join(DATA_PATH, 'hera_testfile'),
ant_str='9_10')
miriad_uv.select(times=miriad_uv.time_array[0])
src_az = Angle('90.0d')
src_alt = Angle('85.0d')
src_za = Angle('90.0d') - src_alt
src_l = np.sin(src_az.rad) * np.sin(src_za.rad)
src_m = np.cos(src_az.rad) * np.sin(src_za.rad)
src_n = np.cos(src_za.rad)
time = Time(miriad_uv.time_array[0], scale='utc', format='jd')
array_location = EarthLocation.from_geocentric(
miriad_uv.telescope_location[0],
miriad_uv.telescope_location[1],
miriad_uv.telescope_location[2],
unit='m')
freq = miriad_uv.freq_array[0, 0] * units.Hz
# get antennas positions into ENU
antpos = miriad_uv.antenna_positions[0:2, :] + miriad_uv.telescope_location
antpos = uvutils.ENU_from_ECEF(antpos.T,
*miriad_uv.telescope_location_lat_lon_alt).T
antenna1 = pyuvsim.Antenna('ant1', 1, np.array(antpos[0, :]), 0)
antenna2 = pyuvsim.Antenna('ant2', 2, np.array(antpos[1, :]), 0)
# setup the things that don't come from pyuvdata:
# make a source off zenith
time.location = array_location
source = create_offzenith_source(time, 'offzensrc', az=src_az, alt=src_alt)
beam = UVBeam()
beam.read_cst_beam(beam_files,
beam_type='efield',
frequency=[100e6, 123e6],
telescope_name='HERA',
feed_name='PAPER',
feed_version='0.1',
feed_pol=['x'],
model_name='E-field pattern - Rigging height 4.9m',
model_version='1.0')
beam_list = [beam]
baseline = pyuvsim.Baseline(antenna1, antenna2)
array = pyuvsim.Telescope('telescope_name', array_location, beam_list)
task = pyuvsim.UVTask(source, time, freq, baseline, array)
engine = pyuvsim.UVEngine(task)
visibility = engine.make_visibility()
# analytically calculate visibility
beam.peak_normalize()
beam.interpolation_function = 'az_za_simple'
interpolated_beam, interp_basis_vector = beam.interp(
az_array=np.array([src_az.rad]),
za_array=np.array([src_za.rad]),
freq_array=np.array([freq.to('Hz').value]))
jones = np.zeros((2, 2), dtype=np.complex64)
jones[0, 0] = interpolated_beam[1, 0, 0, 0, 0]
jones[1, 1] = interpolated_beam[0, 0, 1, 0, 0]
jones[1, 0] = interpolated_beam[1, 0, 1, 0, 0]
jones[0, 1] = interpolated_beam[0, 0, 0, 0, 0]
uvw_wavelength_array = hera_uv.uvw_array * units.m / const.c * freq.to(
'1/s')
vis_analytic = 0.5 * np.dot(
jones,
np.conj(jones).T) * np.exp(
-2j * np.pi *
(uvw_wavelength_array[0, 0] * src_l + uvw_wavelength_array[0, 1] *
src_m + uvw_wavelength_array[0, 2] * src_n))
vis_analytic = np.array([
vis_analytic[0, 0], vis_analytic[1, 1], vis_analytic[1, 0],
vis_analytic[0, 1]
])
print('Analytic visibility', vis_analytic)
print('Calculated visibility', visibility)
nt.assert_true(np.allclose(visibility, vis_analytic, atol=5e-3))
def skycoord(self):
'''
Manage and fix sky coordinates
'''
head = self.head.copy()
# time
if self.obstime not in head:
head['JD'] = Time.now().jd
# earthlocation
location = EarthLocation(lon=self.lon, lat=self.lat, height=self.alt)
timekey = head[self.obstime]
# log.warning(timekey)
if 'MJD' in self.obstime:
obstime = Time(timekey, format='mjd')
elif self.obstime == 'JD':
obstime = Time(timekey, format='jd')
# elif isinstance(self.obstime, list):
# obstime = Time(Time(timekey[0]).unix+timekey[1])
elif 'DATE' in self.obstime:
obstime = Time(timekey)
else:
obstime = Time(timekey)
obstime.location = location
# skycoord
if self.ra in head and self.dec in head:
coord = SkyCoord(
ra=head[self.ra],
dec=head[self.dec],
location=location,
obstime=obstime,
equinox=obstime.jyear_str[:-2],
# frame='icrs',
frame='fk5',
unit=self.unit)
elif self.obj in head:
coord = SkyCoord.from_name(
head[self.obj],
#location=location,
#obstime=obstime,
# frame='icrs',
#equinox=obstime.jyear_str[:-2]
frame='fk5')
else:
log.error("No (RA DEC) and no OBJECT in header")
return
coord = coord.transform_to(FK5(equinox='J2000'))
# Meteo
if self.temperature and self.temperature in head:
coord.temperature = head[self.temperature] * u.deg_C
if self.pressure and self.pressure in head:
coord.pressure = head[self.pressure] * u.hPa
if self.humidity and self.humidity in head:
coord.relative_humidity = head[self.humidity] / 100
# coord.obstime=obstime
self.coord = coord
return coord