def test_pool():
from b4msa.command_line import CommandLine
import os
import sys
fname = os.path.dirname(__file__) + '/text.json'
c = CommandLine()
sys.argv = ['b4msa', '-k', '2', '-s', '11', '-n', '2', fname]
c.main()
os.unlink(c.get_output())
def test_pool():
from b4msa.command_line import CommandLine
import os
import sys
fname = os.path.dirname(__file__) + '/text.json'
c = CommandLine()
sys.argv = ['b4msa', '-k', '2', '-s', '11', '-n', '2', fname]
c.main()
os.unlink(c.get_output())
def test_output():
from b4msa.command_line import CommandLine
import os
import sys
import tempfile
output = tempfile.mktemp()
fname = os.path.dirname(__file__) + '/text.json'
c = CommandLine()
sys.argv = ['b4msa', '-o', output, '-k', '2', fname]
c.main()
assert os.path.isfile(output)
os.unlink(output)
def test_output():
from b4msa.command_line import CommandLine
import os
import sys
import tempfile
output = tempfile.mktemp()
fname = os.path.dirname(__file__) + '/text.json'
c = CommandLine()
sys.argv = ['b4msa', '-o', output, '-k', '2', fname]
c.main()
assert os.path.isfile(output)
os.unlink(output)
def test_seed():
try:
from mock import MagicMock
except ImportError:
from unittest.mock import MagicMock
from b4msa.command_line import CommandLine
import os
import sys
fname = os.path.dirname(__file__) + '/text.json'
seed = np.random.seed
np.random.seed = MagicMock()
c = CommandLine()
sys.argv = ['b4msa', '-s', '2', '--seed', '1', '-k', '2', fname]
c.main()
os.unlink(c.get_output())
np.random.seed.assert_called_once_with(1)
np.random.seed = seed
def test_seed():
try:
from mock import MagicMock
except ImportError:
from unittest.mock import MagicMock
from b4msa.command_line import CommandLine
import os
import sys
fname = os.path.dirname(__file__) + '/text.json'
seed = np.random.seed
np.random.seed = MagicMock()
c = CommandLine()
sys.argv = ['b4msa', '-s', '2', '--seed', '1', '-k', '2', fname]
c.main()
os.unlink(c.get_output())
np.random.seed.assert_called_once_with(1)
np.random.seed = seed
def test_train():
from b4msa.command_line import CommandLine, CommandLineTrain
import os
import sys
import tempfile
output = tempfile.mktemp()
fname = os.path.dirname(__file__) + '/text.json'
c = CommandLine()
sys.argv = ['b4msa', '-o', output, '-k', '2', fname, '-s', '2']
c.main()
assert os.path.isfile(output)
with open(output) as fpt:
print(fpt.read())
c = CommandLineTrain()
sys.argv = ['b4msa', '-m', output, fname]
print(c.main())
os.unlink(output)
os.unlink(c.get_output())
def test_train():
from b4msa.command_line import CommandLine, CommandLineTrain
import os
import sys
import tempfile
output = tempfile.mktemp()
fname = os.path.dirname(__file__) + '/text.json'
c = CommandLine()
sys.argv = ['b4msa', '-o', output, '-k', '2', fname, '-s', '2']
c.main()
assert os.path.isfile(output)
with open(output) as fpt:
print(fpt.read())
c = CommandLineTrain()
sys.argv = ['b4msa', '-m', output, fname]
print(c.main())
os.unlink(output)
os.unlink(c.get_output())