def update(self, row):
'''
update the expander
:param row: the row to get thevalues from
'''
syn_box = self.widgets.fam_synonyms_box
# remove old labels
syn_box.foreach(syn_box.remove)
# use True comparison in case the preference isn't set
self.set_expanded(prefs[self.expanded_pref] is True)
if len(row.synonyms) == 0:
self.set_sensitive(False)
else:
on_clicked = lambda l, e, syn: select_in_search_results(syn)
for syn in row.synonyms:
# create clickable label that will select the synonym
# in the search results
box = gtk.EventBox()
label = gtk.Label()
label.set_alignment(0, .5)
label.set_markup(Family.str(syn))
box.add(label)
utils.make_label_clickable(label, on_clicked, syn)
syn_box.pack_start(box, expand=False, fill=False)
self.show_all()
self.set_sensitive(True)
def update(self, row):
'''
update the expander
:param row: the row to get thevalues from
'''
syn_box = self.widgets.fam_synonyms_box
# remove old labels
syn_box.foreach(syn_box.remove)
# use True comparison in case the preference isn't set
self.set_expanded(prefs[self.expanded_pref] == True)
if len(row.synonyms) == 0:
self.set_sensitive(False)
else:
on_clicked = lambda l, e, syn: select_in_search_results(syn)
for syn in row.synonyms:
# create clickable label that will select the synonym
# in the search results
box = gtk.EventBox()
label = gtk.Label()
label.set_alignment(0, .5)
label.set_markup(Family.str(syn))
box.add(label)
utils.make_label_clickable(label, on_clicked, syn)
syn_box.pack_start(box, expand=False, fill=False)
self.show_all()
self.set_sensitive(True)
def update(self, row):
'''
update the expander
:param row: the row to get the values from
'''
syn_box = self.widgets.gen_synonyms_box
# remove old labels
syn_box.foreach(syn_box.remove)
# use True comparison in case the preference isn't set
self.set_expanded(prefs[self.expanded_pref] is True)
self.session = object_session(row)
logger.debug("genus %s is synonym of %s and has synonyms %s" %
(row, row.accepted, row.synonyms))
self.set_label(_("Synonyms")) # reset default value
if row.accepted is not None:
self.set_label(_("Accepted name"))
on_clicked = lambda l, e, syn: select_in_search_results(syn)
# create clickable label that will select the synonym
# in the search results
box = gtk.EventBox()
label = gtk.Label()
label.set_alignment(0, .5)
label.set_markup(Genus.str(row.accepted, author=True))
box.add(label)
utils.make_label_clickable(label, on_clicked, row.accepted)
syn_box.pack_start(box, expand=False, fill=False)
self.show_all()
self.set_sensitive(True)
elif len(row.synonyms) == 0:
self.set_sensitive(False)
else:
on_clicked = lambda l, e, syn: select_in_search_results(syn)
for syn in row.synonyms:
# create clickable label that will select the synonym
# in the search results
box = gtk.EventBox()
label = gtk.Label()
label.set_alignment(0, .5)
label.set_markup(Genus.str(syn, author=True))
box.add(label)
utils.make_label_clickable(label, on_clicked, syn)
syn_box.pack_start(box, expand=False, fill=False)
self.show_all()
self.set_sensitive(True)
def update(self, row):
'''
update the expander
:param row: the row to get the values from
'''
syn_box = self.widgets.gen_synonyms_box
# remove old labels
syn_box.foreach(syn_box.remove)
# use True comparison in case the preference isn't set
self.set_expanded(prefs[self.expanded_pref] is True)
self.session = object_session(row)
logger.debug("genus %s is synonym of %s and has synonyms %s" %
(row, row.accepted, row.synonyms))
self.set_label(_("Synonyms")) # reset default value
if row.accepted is not None:
self.set_label(_("Accepted name"))
on_clicked = lambda l, e, syn: select_in_search_results(syn)
# create clickable label that will select the synonym
# in the search results
box = gtk.EventBox()
label = gtk.Label()
label.set_alignment(0, .5)
label.set_markup(Genus.str(row.accepted, author=True))
box.add(label)
utils.make_label_clickable(label, on_clicked, row.accepted)
syn_box.pack_start(box, expand=False, fill=False)
self.show_all()
self.set_sensitive(True)
elif len(row.synonyms) == 0:
self.set_sensitive(False)
else:
on_clicked = lambda l, e, syn: select_in_search_results(syn)
for syn in row.synonyms:
# create clickable label that will select the synonym
# in the search results
box = gtk.EventBox()
label = gtk.Label()
label.set_alignment(0, .5)
label.set_markup(Genus.str(syn, author=True))
box.add(label)
utils.make_label_clickable(label, on_clicked, syn)
syn_box.pack_start(box, expand=False, fill=False)
self.show_all()
self.set_sensitive(True)
def update(self, row):
'''
update the expander
:param row: the row to get thevalues from
'''
syn_box = self.widgets.sp_synonyms_box
# remove old labels
syn_box.foreach(syn_box.remove)
logger.debug(row.synonyms)
from sqlalchemy.orm.session import object_session
self.session = object_session(row)
syn = self.session.query(SpeciesSynonym).filter(
SpeciesSynonym.synonym_id == row.id).first()
accepted = syn and syn.species
logger.debug("species %s is synonym of %s and has synonyms %s" %
(row, accepted, row.synonyms))
self.set_label(_("Synonyms")) # reset default value
on_label_clicked = lambda l, e, syn: select_in_search_results(syn)
if accepted is not None:
self.set_label(_("Accepted name"))
# create clickable label that will select the synonym
# in the search results
box = gtk.EventBox()
label = gtk.Label()
label.set_alignment(0, .5)
label.set_markup(Species.str(accepted, markup=True, authors=True))
box.add(label)
utils.make_label_clickable(label, on_label_clicked, accepted)
syn_box.pack_start(box, expand=False, fill=False)
self.show_all()
self.set_sensitive(True)
self.set_expanded(True)
elif len(row.synonyms) == 0:
self.set_sensitive(False)
self.set_expanded(False)
else:
# remove all the children
syn_box.foreach(syn_box.remove)
for syn in row.synonyms:
# create clickable label that will select the synonym
# in the search results
box = gtk.EventBox()
label = gtk.Label()
label.set_alignment(0, .5)
label.set_markup(Species.str(syn, markup=True, authors=True))
box.add(label)
utils.make_label_clickable(label, on_label_clicked, syn)
syn_box.pack_start(box, expand=False, fill=False)
self.show_all()
self.set_sensitive(True)
# TODO: get expanded state from prefs
self.set_expanded(True)
def update(self, row):
'''
update the expander
:param row: the row to get thevalues from
'''
syn_box = self.widgets.sp_synonyms_box
# remove old labels
syn_box.foreach(syn_box.remove)
logger.debug(row.synonyms)
from sqlalchemy.orm.session import object_session
self.session = object_session(row)
syn = self.session.query(SpeciesSynonym).filter(
SpeciesSynonym.synonym_id == row.id).first()
accepted = syn and syn.species
logger.debug("species %s is synonym of %s and has synonyms %s" %
(row, accepted, row.synonyms))
self.set_label(_("Synonyms")) # reset default value
on_label_clicked = lambda l, e, syn: select_in_search_results(syn)
if accepted is not None:
self.set_label(_("Accepted name"))
# create clickable label that will select the synonym
# in the search results
box = gtk.EventBox()
label = gtk.Label()
label.set_alignment(0, .5)
label.set_markup(Species.str(accepted, markup=True, authors=True))
box.add(label)
utils.make_label_clickable(label, on_label_clicked, accepted)
syn_box.pack_start(box, expand=False, fill=False)
self.show_all()
self.set_sensitive(True)
self.set_expanded(True)
elif len(row.synonyms) == 0:
self.set_sensitive(False)
self.set_expanded(False)
else:
# remove all the children
syn_box.foreach(syn_box.remove)
for syn in row.synonyms:
# create clickable label that will select the synonym
# in the search results
box = gtk.EventBox()
label = gtk.Label()
label.set_alignment(0, .5)
label.set_markup(Species.str(syn, markup=True, authors=True))
box.add(label)
utils.make_label_clickable(label, on_label_clicked, syn)
syn_box.pack_start(box, expand=False, fill=False)
self.show_all()
self.set_sensitive(True)
# TODO: get expanded state from prefs
self.set_expanded(True)
def on_clicked(widget, event, parent):
select_in_search_results(parent)
def on_location_clicked(*args):
select_in_search_results(self.current_obj.location)
def on_species_clicked(*args):
select_in_search_results(self.current_obj.accession.species)
def on_acc_code_clicked(*args):
select_in_search_results(self.current_obj.accession)
def on_family_clicked(*args):
select_in_search_results(self.current_obj.family)
def on_family_clicked(*args):
select_in_search_results(self.current_obj.family)
def update(self, row):
'''
update the expander
:param row: the row to get the values from
'''
self.current_obj = row
session = object_session(row)
# link function
on_label_clicked = lambda l, e, x: select_in_search_results(x)
# Link to family
self.widget_set_value('sp_fam_data', '<small>(%s)</small>' %
row.genus.family.family, markup=True)
utils.make_label_clickable(
self.widgets.sp_fam_data, on_label_clicked, row.genus.family)
# link to genus
self.widget_set_value('sp_gen_data', '<big><i>%s</i></big>' %
row.genus.genus, markup=True)
utils.make_label_clickable(
self.widgets.sp_gen_data, on_label_clicked, row.genus)
# epithet (full binomial but missing genus)
self.widget_set_value('sp_epithet_data', '<big>%s</big>' %
row.markup(authors=True, genus=False),
markup=True)
awards = ''
if row.awards:
awards = utils.utf8(row.awards)
self.widget_set_value('sp_awards_data', awards)
logger.debug('setting cites data from row %s' % row)
cites = ''
if row.cites:
cites = utils.utf8(row.cites)
self.widget_set_value('sp_cites_data', cites)
# zone = ''
# if row.hardiness_zone:
# awards = utils.utf8(row.hardiness_zone)
# self.widget_set_value('sp_hardiness_data', zone)
habit = ''
if row.habit:
habit = utils.utf8(row.habit)
self.widget_set_value('sp_habit_data', habit)
dist = ''
if row.distribution:
dist = utils.utf8(row.distribution_str())
self.widget_set_value('sp_dist_data', dist)
dist = ''
if row.label_distribution:
dist = row.label_distribution
self.widget_set_value('sp_labeldist_data', dist)
# stop here if not GardenPluin
if 'GardenPlugin' not in pluginmgr.plugins:
return
from bauble.plugins.garden.accession import Accession
from bauble.plugins.garden.plant import Plant
nacc = session.query(Accession).join('species').\
filter_by(id=row.id).count()
self.widget_set_value('sp_nacc_data', nacc)
nplants = session.query(Plant).join('accession', 'species').\
filter_by(id=row.id).count()
if nplants == 0:
self.widget_set_value('sp_nplants_data', nplants)
else:
nacc_in_plants = session.query(Plant.accession_id).\
join('accession', 'species').\
filter_by(id=row.id).distinct().count()
self.widget_set_value('sp_nplants_data', '%s in %s accessions'
% (nplants, nacc_in_plants))
def on_label_clicked(label, event, syn):
select_in_search_results(syn)
def update(self, row):
'''
update the expander
:param row: the row to get the values from
'''
self.current_obj = row
session = object_session(row)
# link function
on_label_clicked = lambda l, e, x: select_in_search_results(x)
# Link to family
self.widget_set_value('sp_fam_data',
'<small>(%s)</small>' % row.genus.family.epithet,
markup=True)
utils.make_label_clickable(self.widgets.sp_fam_data, on_label_clicked,
row.genus.family)
# link to genus
if row.hybrid_marker != u'H':
self.widget_set_value('sp_gen_data',
'<big><i>%s</i></big> ' %
row.genus.str(use_hybrid_marker=True),
markup=True)
utils.make_label_clickable(self.widgets.sp_gen_data,
on_label_clicked, row.genus)
else:
self.widget_set_value('sp_gen_data', '')
# epithet (full binomial but missing genus)
self.widget_set_value('sp_epithet_data',
'<big>%s</big>' %
row.markup(authors=True, genus=False),
markup=True)
awards = ''
if row.awards:
awards = utils.utf8(row.awards)
self.widget_set_value('sp_awards_data', awards)
logger.debug('setting cites data from row %s' % row)
cites = ''
if row.cites:
cites = utils.utf8(row.cites)
self.widget_set_value('sp_cites_data', cites)
# zone = ''
# if row.hardiness_zone:
# awards = utils.utf8(row.hardiness_zone)
# self.widget_set_value('sp_hardiness_data', zone)
habit = ''
if row.habit:
habit = utils.utf8(row.habit)
self.widget_set_value('sp_habit_data', habit)
dist = ''
if row.distribution:
dist = utils.utf8(row.distribution_str())
self.widget_set_value('sp_dist_data', dist)
dist = ''
if row.label_distribution:
dist = row.label_distribution
self.widget_set_value('sp_labeldist_data', dist)
# stop here if not GardenPluin
if 'GardenPlugin' not in pluginmgr.plugins:
return
from bauble.plugins.garden.accession import Accession
from bauble.plugins.garden.plant import Plant
nacc = session.query(Accession).join('species').\
filter_by(id=row.id).count()
self.widget_set_value('sp_nacc_data', nacc)
nplants = session.query(Plant).join('accession', 'species').\
filter_by(id=row.id).count()
if nplants == 0:
self.widget_set_value('sp_nplants_data', nplants)
else:
nacc_in_plants = session.query(Plant.accession_id).\
join('accession', 'species').\
filter_by(id=row.id).distinct().count()
self.widget_set_value(
'sp_nplants_data',
'%s in %s accessions' % (nplants, nacc_in_plants))
